Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0011080 | OGI:12037850 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:13504916-13507080 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gactgaagagcagaaggtgtctagctagttgcctagttagcaccgtgttgtactgttgttccactcgctcgtgcgcatactccTgctccatcttagcagtcaggttcaggatggcgttcaacgacgatgagaagcctgctactactccaattccgaatggaggtatcgtcttaattccatcagccttccattgatgcattacatattggaatacataccgtttgccgcaatttcgaaatgatcctgcattgaggcggattcaatacatgtatatatgatgtgcagggagcaaacagggcctcgtgacgatgaacatcccgacgtacagcaagaaagatgtggctctgacggcggactcagtgacggctgtggtggagatcaaggcgacgtcctccaccgccgtgagggagggcctggacctggtggccgtggtggacgtgagcggcagcatgcgagggcacaagatcgagagcgtcaagaaggccctgcagttcgtgatcatgaagcttacccccgtggaccgcctctccatcgtcaccttcgaaagcagcgccaagagactcaccaagcttcgtgccatgacccaggacttccggggcgagctcgacggaatcgtcaaatccctcattgccaacggtggcaccgacatcaaggccggccttgacttggggctggctgtcctcgccgaccgcgtgttcacggaatcccgcaccgccaacatcttcctcatgtccgacggcaagctcgagggtaagacctccggtgacccgacgcaagtcaaccccggcgaggtctccgtctacacctttggtttcggccatggcacagaccaccaggtatgtatgtacaattgctagttgctacttgctactccagttgctagctattgctaaccatcctcctgccttgtaattggacgaatggtattgccattggtagctgctcacggacatcgccaagaattcccccggcggaacgtacagcacggtgcccgacgggacgaacctgagcgcgcccttcgcgacgctgctgggtggcctcgtcaccgtggtggcgcaggacgtgcggctgacgctcacccccaagacggccgacggcgacctggacaagatggaggtggccgacggaacggactacacgcagaccaccgacgccaaaggcgagatcaccatcaaattcggcacccttttcagcggggagacacgcaaggtcgccgtcaacttcaccctcaacgaaagccccgacaccgaggagtacaacgcgaccttagcggtggcgaggcacagctacgccgcccaggaggcgccgcagcctgcccagaacatcgtgcggctgcgcaaaccggagccgaccactcccggcagcgacgacggcatcgaggagcggtccgtgcaggccgaggtggtgcgccggaggcacgccgacctgatcggcaaggccagcgagctggcgaatggccagaagctgggcgacgcgcgggaaacgatcatggacgcccagaacgcgctgggggacatcctcctggacgacggcgacaggatggtgaacgcgctccaagccgagctgctgcggctgctggaatacatggagacgcaggcgctctacgacaagctgggccacccctacgcgctcgccaccatcatctcccatcgccgccagcgcgccgctggaaggggcgacgaggaggtcatctccctctacgtcacgccgcgcatgatcgcctacctcgctcaggccaagaagttcgaggagaacccggaagcgccggtgcccagcgctgacgaggatgtcaagcaggagatggctgccaacccactcgccgctatctccgccccgctcggcttctacctggagaacgccatcaaggcactgcaggccatccagaagatcatcgccgccaacacaatttgatattatatattgccttgcccgtccaattcgaatttactatcccagtcccagacgcgcatgtgctaagttacgttgttcttcatctctttcaatttcctttctcgcttctgatcatactacttatatgtatgtaaccgatccaataagtgcgccggcccctaagatgtaatcaatctatatatgtaccactgtaatgtaatgcaagaccctttttagagcaactacaatagcacatttaaattcagatttgctcc
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| CDS seq | atggcgttcaacgacgatgagaagcctgctactactccaattccgaatggagggagcaaacagggcctcgtgacgatgaacatcccgacgtacagcaagaaagatgtggctctgacggcggactcagtgacggctgtggtggagatcaaggcgacgtcctccaccgccgtgagggagggcctggacctggtggccgtggtggacgtgagcggcagcatgcgagggcacaagatcgagagcgtcaagaaggccctgcagttcgtgatcatgaagcttacccccgtggaccgcctctccatcgtcaccttcgaaagcagcgccaagagactcaccaagcttcgtgccatgacccaggacttccggggcgagctcgacggaatcgtcaaatccctcattgccaacggtggcaccgacatcaaggccggccttgacttggggctggctgtcctcgccgaccgcgtgttcacggaatcccgcaccgccaacatcttcctcatgtccgacggcaagctcgagggtaagacctccggtgacccgacgcaagtcaaccccggcgaggtctccgtctacacctttggtttcggccatggcacagaccaccagctgctcacggacatcgccaagaattcccccggcggaacgtacagcacggtgcccgacgggacgaacctgagcgcgcccttcgcgacgctgctgggtggcctcgtcaccgtggtggcgcaggacgtgcggctgacgctcacccccaagacggccgacggcgacctggacaagatggaggtggccgacggaacggactacacgcagaccaccgacgccaaaggcgagatcaccatcaaattcggcacccttttcagcggggagacacgcaaggtcgccgtcaacttcaccctcaacgaaagccccgacaccgaggagtacaacgcgaccttagcggtggcgaggcacagctacgccgcccaggaggcgccgcagcctgcccagaacatcgtgcggctgcgcaaaccggagccgaccactcccggcagcgacgacggcatcgaggagcggtccgtgcaggccgaggtggtgcgccggaggcacgccgacctgatcggcaaggccagcgagctggcgaatggccagaagctgggcgacgcgcgggaaacgatcatggacgcccagaacgcgctgggggacatcctcctggacgacggcgacaggatggtgaacgcgctccaagccgagctgctgcggctgctggaatacatggagacgcaggcgctctacgacaagctgggccacccctacgcgctcgccaccatcatctcccatcgccgccagcgcgccgctggaaggggcgacgaggaggtcatctccctctacgtcacgccgcgcatgatcgcctacctcgctcaggccaagaagttcgaggagaacccggaagcgccggtgcccagcgctgacgaggatgtcaagcaggagatggctgccaacccactcgccgctatctccgccccgctcggcttctacctggagaacgccatcaaggcactgcaggccatccagaagatcatcgccgccaacacaatttga
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| Protein seq | MAFNDDEKPATTPIPNGGSKQGLVTMNIPTYSKKDVALTADSVTAVVEIKATSSTAVREGLDLVAVVDVSGSMRGHKIESVKKALQFVIMKLTPVDRLSIVTFESSAKRLTKLRAMTQDFRGELDGIVKSLIANGGTDIKAGLDLGLAVLADRVFTESRTANIFLMSDGKLEGKTSGDPTQVNPGEVSVYTFGFGHGTDHQLLTDIAKNSPGGTYSTVPDGTNLSAPFATLLGGLVTVVAQDVRLTLTPKTADGDLDKMEVADGTDYTQTTDAKGEITIKFGTLFSGETRKVAVNFTLNESPDTEEYNATLAVARHSYAAQEAPQPAQNIVRLRKPEPTTPGSDDGIEERSVQAEVVRRRHADLIGKASELANGQKLGDARETIMDAQNALGDILLDDGDRMVNALQAELLRLLEYMETQALYDKLGHPYALATIISHRRQRAAGRGDEEVISLYVTPRMIAYLAQAKKFEENPEAPVPSADEDVKQEMAANPLAAISAPLGFYLENAIKALQAIQKIIAANTI |
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| Function | E3 ubiquitin-protein ligase WAV3 [UniProtKB/Swiss-Prot:Q9LTA6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0011080 | OsLima_12g0011080.01 | Chr12 | 13504916 | 13507080 | + | NAM | ||
| CDS seq | atggcgttcaacgacgatgagaagcctgctactactccaattccgaatggagggagcaaacagggcctcgtgacgatgaacatcccgacgtacagcaagaaagatgtggctctgacggcggactcagtgacggctgtggtggagatcaaggcgacgtcctccaccgccgtgagggagggcctggacctggtggccgtggtggacgtgagcggcagcatgcgagggcacaagatcgagagcgtcaagaaggccctgcagttcgtgatcatgaagcttacccccgtggaccgcctctccatcgtcaccttcgaaagcagcgccaagagactcaccaagcttcgtgccatgacccaggacttccggggcgagctcgacggaatcgtcaaatccctcattgccaacggtggcaccgacatcaaggccggccttgacttggggctggctgtcctcgccgaccgcgtgttcacggaatcccgcaccgccaacatcttcctcatgtccgacggcaagctcgagggtaagacctccggtgacccgacgcaagtcaaccccggcgaggtctccgtctacacctttggtttcggccatggcacagaccaccagctgctcacggacatcgccaagaattcccccggcggaacgtacagcacggtgcccgacgggacgaacctgagcgcgcccttcgcgacgctgctgggtggcctcgtcaccgtggtggcgcaggacgtgcggctgacgctcacccccaagacggccgacggcgacctggacaagatggaggtggccgacggaacggactacacgcagaccaccgacgccaaaggcgagatcaccatcaaattcggcacccttttcagcggggagacacgcaaggtcgccgtcaacttcaccctcaacgaaagccccgacaccgaggagtacaacgcgaccttagcggtggcgaggcacagctacgccgcccaggaggcgccgcagcctgcccagaacatcgtgcggctgcgcaaaccggagccgaccactcccggcagcgacgacggcatcgaggagcggtccgtgcaggccgaggtggtgcgccggaggcacgccgacctgatcggcaaggccagcgagctggcgaatggccagaagctgggcgacgcgcgggaaacgatcatggacgcccagaacgcgctgggggacatcctcctggacgacggcgacaggatggtgaacgcgctccaagccgagctgctgcggctgctggaatacatggagacgcaggcgctctacgacaagctgggccacccctacgcgctcgccaccatcatctcccatcgccgccagcgcgccgctggaaggggcgacgaggaggtcatctccctctacgtcacgccgcgcatgatcgcctacctcgctcaggccaagaagttcgaggagaacccggaagcgccggtgcccagcgctgacgaggatgtcaagcaggagatggctgccaacccactcgccgctatctccgccccgctcggcttctacctggagaacgccatcaaggcactgcaggccatccagaagatcatcgccgccaacacaatttga
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| Protein seq | MAFNDDEKPATTPIPNGGSKQGLVTMNIPTYSKKDVALTADSVTAVVEIKATSSTAVREGLDLVAVVDVSGSMRGHKIESVKKALQFVIMKLTPVDRLSIVTFESSAKRLTKLRAMTQDFRGELDGIVKSLIANGGTDIKAGLDLGLAVLADRVFTESRTANIFLMSDGKLEGKTSGDPTQVNPGEVSVYTFGFGHGTDHQLLTDIAKNSPGGTYSTVPDGTNLSAPFATLLGGLVTVVAQDVRLTLTPKTADGDLDKMEVADGTDYTQTTDAKGEITIKFGTLFSGETRKVAVNFTLNESPDTEEYNATLAVARHSYAAQEAPQPAQNIVRLRKPEPTTPGSDDGIEERSVQAEVVRRRHADLIGKASELANGQKLGDARETIMDAQNALGDILLDDGDRMVNALQAELLRLLEYMETQALYDKLGHPYALATIISHRRQRAAGRGDEEVISLYVTPRMIAYLAQAKKFEENPEAPVPSADEDVKQEMAANPLAAISAPLGFYLENAIKALQAIQKIIAANTI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0431700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g24390 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0431700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0011330 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0011510 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0011490 | RBH | 0.0 | 1.715585 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0011300 | RBH | 0.0 | 0.121559 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0011040 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0191900 | RBH | 0 | 0.5035665 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0011250 | RBH | 0.0 | 0.329583 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0215500 | RBH | 0.0250015 | 0.199686 | 0.0120265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0011430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0011330 | RBH | 0.0 | 3.256437 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0011260 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0011450 | RBH | 0.0 | 3.575731 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G011220 | RBH | 0.0 | 0.0 | 0.366006 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0010970 | RBH | 0.0 | 0.0 | 0.0 |
