Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0128000 | OGI:12004040 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:1342002-1344257 | ||||||||
| Gene Symbol | OsFbox638, Os_F0021 | ||||||||||
| DNA seq | GGCGCCGCCTCCATTCTTCTCATCCTCTCCACTGCGGCGCGGCGGCGCGGCCTCTTAGCGCCATTTCCTCCTCCACTTGGAAGCAGCAGAAGCGGAAGCCCGTCGCCCGCCTGGCTCGAGCTCAAGGCCATGGAGTAGTAAGTACCAATCCCTTGCTGTCCATTGCTACCTACCTGTATTTTAGTTTGCCCCTGTATTTCTGTCTCTGTACATGTCTGATTGATTGATTAGCGAAGATTTTCATGTGTTCTGTCCCAGTGATGAGCAGTTTAGTAATCTGAGCACTTGATTCAGTTCAGTTGGTGCTCCCTCCACTGCAATATGCTGTGAGGTTGAAGGAACCGATCGATCGATAATTCCATGTGCACTGTTGAGAATAGGCATTCTGAGGGACAGACATGATTCAGTTTAGTTTGCTTCTTCGTATTTTAGATTAGTGTTTTAATCTTCCTTTTCATTTCAGTGTGATTCTTGGTGTTAAATACTTTTGCTGGTGGAATGGAGTTGGAGCCTCAGTCCAGGCTTTGGTTTTCCCTGATCAGATCCAGTCCTAATTGCTTGTTTGTTTATCAGTTATGATCAGTCACTTGCTCTGACGATTCGGAGGGAGGATGAATAGCGGATCACAAAACGAGATGATTGATTCATGTGAGATCCAAGCACCCATCTTGAGCTGTATTTTCTTTAGAGTTCTTGACGGTCTGGAATCCTAATGTGTTCTCTTTCCATGGAAAATTTTTGGGCATTTCAGTTTCAGAGCGGCAAGGAGCCAAGGATGCAGCAGCACTAGGGTCCTAGTCCAAATTGTCAGCTGGGGGATCAATGGCAATGGCGGAGACGGTGAGGCTGCCCGAACAGCAGCGTCGCAGGCCTCTCACCATTGCCAGCCTCCCTGAAGAAATTATGTCGGAGATTCTGCTCCTGCTGCCGCCAAAATCCATCCTCCAGTGCCGTGCCGTCTGCAAGGCCTGGCGGGACGTCACCTCCGACCGCGCCTTCCTCCTCACCCACCACCGCCGCCAGCCTCCACAGCGCCTCCTCACCTTCATCCGCGACGTGGGCAGTCACCACGATGACCTGGATATCCTGGACTACTGTGTTGAAGCCGTTGACTTCCGCACACACCAGTTCCAGTCTCTGGCCCGGTTCACTGGCCAAGATTACGACTGCTCACTCGAAGACAGCCCATTCACCGTCCACGCTTCTTGCGATGGTCTCCTGCTCATGTCCTACAACAACTATTTGCATCTCTGCAACCCCACTACACGTCAATGGCTTTGGGTCTCCCCCCCGGCGCTTCAACATGACAAGGTCGTGGGGCTCTATGCACATGGACATCCTTCCGAATACCGAGTATTGTACTATCGAGAATTTGGTTTGGGACGTACATTCTACATCACCACTGTTGGCTCCAGGAAGGAGAGGCGCATTTGGCCACATTCATCATCAGAATCCCTGAGAAAGTGGTTGACAAAAGGGACAGAGGATACTGAATTCAACAAGCCTTTCCTGTTTCATGGAAACCTGCACTGGTTGCCACAGTCAGGTCGACAAAACAAGATAGTGGTGTTCGATACACTGGATGAGGCGTTTCGGTGGTTGCATGTACCTTTCAAGATGCACAATGTGTCCTCATTACTCGAGATTGAGGGTAGCCTTGCCATGTCAAACAGCCATATTGGATCATCAAAGGTGGATCTTTGGCTTCTGCAAGATTATAAGCATATGGTATGGGTCCACAAGTATCGAATTGAATTGCCAGTGATAGAGATTCGCCGTTTAGTAGAAGATGATGTTTGGTTTCTTCATATTGTTTCCCAAGAGGGTGATGTCTTGGTTGATGGATCTTATTGGCAGTTTCACTACGACATGAAGGGTAATTTGCTGGAGAAATTTCAATGTAGTGGCCGCATGCTGAACATTACTCCACATATTCTCCAAGAAAGTCTCGTTCCACACGAAGTGTTCCAAATTCTAGATAATGAAAGTAGACATGCACCACATTTCTTCAGGGGGTTGTAGAGCATACTTTCTGTACTGTGAGGCTATTTCACACTTTTGGGCGTCTATTCATTGGATACTGCAATTTTAGCGATGGAACTTAATTTTGTAGTGAATGGTCAATGATCTGTTGTTGCAAAGGGCAGCATTCACTCTGATCAGTATTTCTGTACCTCCACATGTTCATCTTTAACATCGAGGGTATCATTTCAGTACTGTACGTGGGAAATTTAAATGCCTGAGACTGTTTTTTCC
More
|
||||||||||
| CDS seq | ATGGCAATGGCGGAGACGGTGAGGCTGCCCGAACAGCAGCGTCGCAGGCCTCTCACCATTGCCAGCCTCCCTGAAGAAATTATGTCGGAGATTCTGCTCCTGCTGCCGCCAAAATCCATCCTCCAGTGCCGTGCCGTCTGCAAGGCCTGGCGGGACGTCACCTCCGACCGCGCCTTCCTCCTCACCCACCACCGCCGCCAGCCTCCACAGCGCCTCCTCACCTTCATCCGCGACGTGGGCAGTCACCACGATGACCTGGATATCCTGGACTACTGTGTTGAAGCCGTTGACTTCCGCACACACCAGTTCCAGTCTCTGGCCCGGTTCACTGGCCAAGATTACGACTGCTCACTCGAAGACAGCCCATTCACCGTCCACGCTTCTTGCGATGGTCTCCTGCTCATGTCCTACAACAACTATTTGCATCTCTGCAACCCCACTACACGTCAATGGCTTTGGGTCTCCCCCCCGGCGCTTCAACATGACAAGGTCGTGGGGCTCTATGCACATGGACATCCTTCCGAATACCGAGTATTGTACTATCGAGAATTTGGTTTGGGACGTACATTCTACATCACCACTGTTGGCTCCAGGAAGGAGAGGCGCATTTGGCCACATTCATCATCAGAATCCCTGAGAAAGTGGTTGACAAAAGGGACAGAGGATACTGAATTCAACAAGCCTTTCCTGTTTCATGGAAACCTGCACTGGTTGCCACAGTCAGGTCGACAAAACAAGATAGTGGTGTTCGATACACTGGATGAGGCGTTTCGGTGGTTGCATGTACCTTTCAAGATGCACAATGTGTCCTCATTACTCGAGATTGAGGGTAGCCTTGCCATGTCAAACAGCCATATTGGATCATCAAAGGTGGATCTTTGGCTTCTGCAAGATTATAAGCATATGGTATGGGTCCACAAGTATCGAATTGAATTGCCAGTGATAGAGATTCGCCGTTTAGTAGAAGATGATGTTTGGTTTCTTCATATTGTTTCCCAAGAGGGTGATGTCTTGGTTGATGGATCTTATTGGCAGTTTCACTACGACATGAAGGGTAATTTGCTGGAGAAATTTCAATGTAGTGGCCGCATGCTGAACATTACTCCACATATTCTCCAAGAAAGTCTCGTTCCACACGAAGTGTTCCAAATTCTAGATAATGAAAGTAGACATGCACCACATTTCTTCAGGGGGTTGTAG
More
|
||||||||||
| Protein seq | MAMAETVRLPEQQRRRPLTIASLPEEIMSEILLLLPPKSILQCRAVCKAWRDVTSDRAFLLTHHRRQPPQRLLTFIRDVGSHHDDLDILDYCVEAVDFRTHQFQSLARFTGQDYDCSLEDSPFTVHASCDGLLLMSYNNYLHLCNPTTRQWLWVSPPALQHDKVVGLYAHGHPSEYRVLYYREFGLGRTFYITTVGSRKERRIWPHSSSESLRKWLTKGTEDTEFNKPFLFHGNLHWLPQSGRQNKIVVFDTLDEAFRWLHVPFKMHNVSSLLEIEGSLAMSNSHIGSSKVDLWLLQDYKHMVWVHKYRIELPVIEIRRLVEDDVWFLHIVSQEGDVLVDGSYWQFHYDMKGNLLEKFQCSGRMLNITPHILQESLVPHEVFQILDNESRHAPHFFRGL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0128000 | OsNip_12t0128000-01 | Chr12 | 1342002 | 1344257 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAATGGCGGAGACGGTGAGGCTGCCCGAACAGCAGCGTCGCAGGCCTCTCACCATTGCCAGCCTCCCTGAAGAAATTATGTCGGAGATTCTGCTCCTGCTGCCGCCAAAATCCATCCTCCAGTGCCGTGCCGTCTGCAAGGCCTGGCGGGACGTCACCTCCGACCGCGCCTTCCTCCTCACCCACCACCGCCGCCAGCCTCCACAGCGCCTCCTCACCTTCATCCGCGACGTGGGCAGTCACCACGATGACCTGGATATCCTGGACTACTGTGTTGAAGCCGTTGACTTCCGCACACACCAGTTCCAGTCTCTGGCCCGGTTCACTGGCCAAGATTACGACTGCTCACTCGAAGACAGCCCATTCACCGTCCACGCTTCTTGCGATGGTCTCCTGCTCATGTCCTACAACAACTATTTGCATCTCTGCAACCCCACTACACGTCAATGGCTTTGGGTCTCCCCCCCGGCGCTTCAACATGACAAGGTCGTGGGGCTCTATGCACATGGACATCCTTCCGAATACCGAGTATTGTACTATCGAGAATTTGGTTTGGGACGTACATTCTACATCACCACTGTTGGCTCCAGGAAGGAGAGGCGCATTTGGCCACATTCATCATCAGAATCCCTGAGAAAGTGGTTGACAAAAGGGACAGAGGATACTGAATTCAACAAGCCTTTCCTGTTTCATGGAAACCTGCACTGGTTGCCACAGTCAGGTCGACAAAACAAGATAGTGGTGTTCGATACACTGGATGAGGCGTTTCGGTGGTTGCATGTACCTTTCAAGATGCACAATGTGTCCTCATTACTCGAGATTGAGGGTAGCCTTGCCATGTCAAACAGCCATATTGGATCATCAAAGGTGGATCTTTGGCTTCTGCAAGATTATAAGCATATGGTATGGGTCCACAAGTATCGAATTGAATTGCCAGTGATAGAGATTCGCCGTTTAGTAGAAGATGATGTTTGGTTTCTTCATATTGTTTCCCAAGAGGGTGATGTCTTGGTTGATGGATCTTATTGGCAGTTTCACTACGACATGAAGGGTAATTTGCTGGAGAAATTTCAATGTAGTGGCCGCATGCTGAACATTACTCCACATATTCTCCAAGAAAGTCTCGTTCCACACGAAGTGTTCCAAATTCTAGATAATGAAAGTAGACATGCACCACATTTCTTCAGGGGGTTGTAG
More
|
|||||||
| Protein seq | MAMAETVRLPEQQRRRPLTIASLPEEIMSEILLLLPPKSILQCRAVCKAWRDVTSDRAFLLTHHRRQPPQRLLTFIRDVGSHHDDLDILDYCVEAVDFRTHQFQSLARFTGQDYDCSLEDSPFTVHASCDGLLLMSYNNYLHLCNPTTRQWLWVSPPALQHDKVVGLYAHGHPSEYRVLYYREFGLGRTFYITTVGSRKERRIWPHSSSESLRKWLTKGTEDTEFNKPFLFHGNLHWLPQSGRQNKIVVFDTLDEAFRWLHVPFKMHNVSSLLEIEGSLAMSNSHIGSSKVDLWLLQDYKHMVWVHKYRIELPVIEIRRLVEDDVWFLHIVSQEGDVLVDGSYWQFHYDMKGNLLEKFQCSGRMLNITPHILQESLVPHEVFQILDNESRHAPHFFRGL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0131300 | RBH | 0.407597 | 0.611655 | 0.432033 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03440 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0128000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001870 | RBH | 0.076051 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002080 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002080 | RBH | 0.000000 | 0.892501 | 0.265052 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001880 | RBH | 0.0 | 0.014077 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002010 | RBH | 0.000000 | 0.0 | 0.423188 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0024600 | RBH | 0.115363 | 0.9415545 | 0.07635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002000 | RBH | 0.036211 | 0.060029 | 0.046125 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0025700 | RBH | 0.1391835 | 0.5749895 | 1.7755475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002040 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002030 | RBH | 0.740573 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002070 | SBH | 0.135397 | 3.188331 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002020 | SBH | 0.132799 | 2.013420 | 1.202240 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001980 | SBH | 0.770672 | 5.627914 | 4.621884 |
