Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0002070 | OGI:11005030 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:1527155-1529437 | ||||||||
| Gene Symbol | OsFbox565, Os_F0027, OsFbox638, Os_F0021 | ||||||||||
| DNA seq | gccggcgccgcgtccattcttctcatcctctccactgcggcgcggcggcgcggcctcttagcgccatttcctcctccacttggaagcagcagaagcggaagcccgtcgcccgcctggctcgagctcaagtagtaagtaccaatcccttgctgtccattgctacctacctgtattttagtttgcccctgtatttctgcctctgtatatgtctgattgattgattagcgaagattttcatgtgttctgtcccagtgatgagcagtttagtaatctgagcacttgattcagttcagttggtgctccctccactgcaatatgctgtgaggttgaaggaaccgatcgatcgataattccatgtgcactgttgagaataggcattctgagggacagacatgattcagtttagtttgcttcttcgtattttagattagtgttttaatcttccttttcatttcagtgtgattcttggtgttaaatacttttgctggtggaatggagttggagcctcagtccaggctttggttttccctgatcagatccagtcctaattgcttgtttgtttatcagttatgatcagtcacttactctgatgattcggagggaggatgaatagcgatcacaaaacgagatgattgattcatgtgagatccgaacacccatcttgagctgtattttctttcgagttcttgacggtctggaatcctaatgtgctctctttccatgggaaatttttggccatttcagtttcagagcggcaaggagccaaggatgcagcagcactagggtcctagtccaaattgtcagctgggggctcaattgcaatggcggagatggtgaggctgcccgaacagcagcgtcgtaggcctctcaccatttccaacctccctgaagaaattctgtcggagattctgctcctgctaccgccaaaatccatcctccagtgccgtgccgtctgcaaagtctggcgggacgtcacctccgaccgcgccttcctccttccccaccactgccgccagcctccgcagcgcctcctcaccttcatccgcgacgtgggcagtcgccacgatgacctggatatcctggactactgtgttgaagccgttgacttccgcacacaccagttccagtctctggcccggttcactggccaagattacgactgctcactcgaagacagcccattcaccgtccacgcttcttgcgatggtctcctgctcatgtcctacaacaactatttgcatctctgcaatcctactacacgtcaatggctttgggtcttcccgccggcgcttcaacatgacaccgtcctggggctctattctcatggccattcttctgaataccgagtattgtattatcgagaaattggtttgggccctgaattctacatcagcattgttggctcagggaaggagaggagcatttggccccattcatcgtcagcatccctgagaaagtggttggcgaaagggaaggaggaaactcagttcaacgagcctttcctgtttcatggaaacctgcactggctgccgcacttaggtggacagaacaagatagtggtgttcgacactctcgatgaggtgtttcggtggttgcatgtacctttcaagatgcacaatatgtcgtcattactcgagattgagggtagccttgccatgtcaaacagccatattggatcatcaaaggtggatctttggcttctgcaagattataagcatatggtatgggtccacaagtatcgaattgaattaccagttatagagattcgccgttttgaagaagatgatggttggtatcttcatattgtttctcaagagggtgatgtcttggttgatggatttgattggcagtttcactacgacataaagggcaatttgctggagaaatttcaatgtagtggccgcatgctgaacattactccacatattctccaagaaagtctcgttccacatgaagtgtgccaaattctaaataatgaaagtagacatgaaccacatttcttcagggggctgtagagcatactttctttaccgtgaggctacttcacacttttgggtgtctattcattggatactgcaattttagcgatggaacttaattttgtagtgaatggtcaatgatctgatgttgcaaagggcagcattcactctgatcagtatttctgtacctccacatgttcatcttcaacattgagggtatcatttctgtactgtacatggaaaattaaatgcctgagactgttttttcctggtttgttgaagtctgagactgaacagttgatta
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| CDS seq | atggcggagatggtgaggctgcccgaacagcagcgtcgtaggcctctcaccatttccaacctccctgaagaaattctgtcggagattctgctcctgctaccgccaaaatccatcctccagtgccgtgccgtctgcaaagtctggcgggacgtcacctccgaccgcgccttcctccttccccaccactgccgccagcctccgcagcgcctcctcaccttcatccgcgacgtgggcagtcgccacgatgacctggatatcctggactactgtgttgaagccgttgacttccgcacacaccagttccagtctctggcccggttcactggccaagattacgactgctcactcgaagacagcccattcaccgtccacgcttcttgcgatggtctcctgctcatgtcctacaacaactatttgcatctctgcaatcctactacacgtcaatggctttgggtcttcccgccggcgcttcaacatgacaccgtcctggggctctattctcatggccattcttctgaataccgagtattgtattatcgagaaattggtttgggccctgaattctacatcagcattgttggctcagggaaggagaggagcatttggccccattcatcgtcagcatccctgagaaagtggttggcgaaagggaaggaggaaactcagttcaacgagcctttcctgtttcatggaaacctgcactggctgccgcacttaggtggacagaacaagatagtggtgttcgacactctcgatgaggtgtttcggtggttgcatgtacctttcaagatgcacaatatgtcgtcattactcgagattgagggtagccttgccatgtcaaacagccatattggatcatcaaaggtggatctttggcttctgcaagattataagcatatggtatgggtccacaagtatcgaattgaattaccagttatagagattcgccgttttgaagaagatgatggttggtatcttcatattgtttctcaagagggtgatgtcttggttgatggatttgattggcagtttcactacgacataaagggcaatttgctggagaaatttcaatgtagtggccgcatgctgaacattactccacatattctccaagaaagtctcgttccacatgaagtgtgccaaattctaaataatgaaagtagacatgaaccacatttcttcagggggctgtag
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| Protein seq | MAEMVRLPEQQRRRPLTISNLPEEILSEILLLLPPKSILQCRAVCKVWRDVTSDRAFLLPHHCRQPPQRLLTFIRDVGSRHDDLDILDYCVEAVDFRTHQFQSLARFTGQDYDCSLEDSPFTVHASCDGLLLMSYNNYLHLCNPTTRQWLWVFPPALQHDTVLGLYSHGHSSEYRVLYYREIGLGPEFYISIVGSGKERSIWPHSSSASLRKWLAKGKEETQFNEPFLFHGNLHWLPHLGGQNKIVVFDTLDEVFRWLHVPFKMHNMSSLLEIEGSLAMSNSHIGSSKVDLWLLQDYKHMVWVHKYRIELPVIEIRRFEEDDGWYLHIVSQEGDVLVDGFDWQFHYDIKGNLLEKFQCSGRMLNITPHILQESLVPHEVCQILNNESRHEPHFFRGL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0002070 | OsLaMu_11g0002070.01 | Chr11 | 1527155 | 1529437 | + | NAM | ||
| CDS seq | atggcggagatggtgaggctgcccgaacagcagcgtcgtaggcctctcaccatttccaacctccctgaagaaattctgtcggagattctgctcctgctaccgccaaaatccatcctccagtgccgtgccgtctgcaaagtctggcgggacgtcacctccgaccgcgccttcctccttccccaccactgccgccagcctccgcagcgcctcctcaccttcatccgcgacgtgggcagtcgccacgatgacctggatatcctggactactgtgttgaagccgttgacttccgcacacaccagttccagtctctggcccggttcactggccaagattacgactgctcactcgaagacagcccattcaccgtccacgcttcttgcgatggtctcctgctcatgtcctacaacaactatttgcatctctgcaatcctactacacgtcaatggctttgggtcttcccgccggcgcttcaacatgacaccgtcctggggctctattctcatggccattcttctgaataccgagtattgtattatcgagaaattggtttgggccctgaattctacatcagcattgttggctcagggaaggagaggagcatttggccccattcatcgtcagcatccctgagaaagtggttggcgaaagggaaggaggaaactcagttcaacgagcctttcctgtttcatggaaacctgcactggctgccgcacttaggtggacagaacaagatagtggtgttcgacactctcgatgaggtgtttcggtggttgcatgtacctttcaagatgcacaatatgtcgtcattactcgagattgagggtagccttgccatgtcaaacagccatattggatcatcaaaggtggatctttggcttctgcaagattataagcatatggtatgggtccacaagtatcgaattgaattaccagttatagagattcgccgttttgaagaagatgatggttggtatcttcatattgtttctcaagagggtgatgtcttggttgatggatttgattggcagtttcactacgacataaagggcaatttgctggagaaatttcaatgtagtggccgcatgctgaacattactccacatattctccaagaaagtctcgttccacatgaagtgtgccaaattctaaataatgaaagtagacatgaaccacatttcttcagggggctgtag
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| Protein seq | MAEMVRLPEQQRRRPLTISNLPEEILSEILLLLPPKSILQCRAVCKVWRDVTSDRAFLLPHHCRQPPQRLLTFIRDVGSRHDDLDILDYCVEAVDFRTHQFQSLARFTGQDYDCSLEDSPFTVHASCDGLLLMSYNNYLHLCNPTTRQWLWVFPPALQHDTVLGLYSHGHSSEYRVLYYREIGLGPEFYISIVGSGKERSIWPHSSSASLRKWLAKGKEETQFNEPFLFHGNLHWLPHLGGQNKIVVFDTLDEVFRWLHVPFKMHNMSSLLEIEGSLAMSNSHIGSSKVDLWLLQDYKHMVWVHKYRIELPVIEIRRFEEDDGWYLHIVSQEGDVLVDGFDWQFHYDIKGNLLEKFQCSGRMLNITPHILQESLVPHEVCQILNNESRHEPHFFRGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.135397 | 3.188331 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0131300 | RBH | 0.407597 | 0.611655 | 0.432033 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03680 | RBH | 0.339524 | 0.426070 | 0.105294 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0131300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002040 | RBH | 0.399488 | 3.770307 | 1.457949 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002090 | RBH | 0.0 | 0.315411 | 0.533279 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002070 | RBH | 0.241900 | 1.920844 | 3.415122 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002030 | RBH | 0.000000 | 0.133570 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002010 | RBH | 2.837681 | 9.519900 | 4.187186 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0029000 | RBH | 2.737793 | 10.5557825 | 5.0708815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002010 | RBH | 0.167881 | 0.276771 | 0.468419 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0027900 | RBH | 2.867604 | 6.6687805 | 10.9056325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001920 | RBH | 0.071295 | 0.139194 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002070 | RBH | 0.253779 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002060 | RBH | 4.142295 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002000 | RBH | 0.000000 | 0.0 | 0.841921 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001280 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002020 | RBH | 0.132799 | 2.013420 | 1.202240 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001980 | RBH | 0.770672 | 5.627914 | 4.621884 |
