Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0691600 | OGI:11010520 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:28215210-28219238 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATAAAGACATGCGTGGTCACTGCAAATCCGCACGCATAGCTAGCTACTAGAAATGGGCAAAAACGACGAAATTCGCATACGACGACTAATTGCCATGCCACACATAGTAGTAGTTGTGCTATGCTGGTTTCTTCATGCTCCTGCAGCAGCGGCGACACTTTCTGATCTGGCAGTGCCGGCTACGCCGGCGCCGGCGCCGGTGCCGGCGGCGTGCCCGAGCAAGTGCGGCAACGTGGAGATCCCCTACCCATTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCACCATCAAATGCAACCATAGCTTTAGCCCTCCCAGGCCGTACACGGGCACCATAGAGATCAAGGACATCTCGCTGGAGGCAGGGGAGATGCGCGTCTACACTCATGTGGCCCACCAATGCTACGACTCATCACACCACGAGGAGCACGTCTCCACGCGGTTGAAGCTCCATGGCAAATCTCGCTTGTCGCGGAAAAGGAACGAGTTCACGGCGATCGGCTGCAACACGGTAGCGTTTCTGATTGGCAGGAAGAAAGGGAGCTACTCGACCGGATGCATCTCGACGTGCGCGAGCTTGGATAAGGCCGCCCACGACGGTGACCCATGTACGGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCGCCCAACCTTAGTGTCTTAAATATTTCCTGGGGTGACGGCTTCGACGACGACCTCGTGCGGGCAGACAGCCCCTGCAGCTACGCCTTCGTTGCCGAGAAAGGCTGGTAAGTGCACAGCATTTGTTAAAACTTCACCCGAAAATTGGGATGCAGCACTGCCTTATACTCCCTCCGCCGCATAATATAATGGATTTTGGATTGATGTGACATATTCTAGTATACAATGAATCTAGACATCCTATACGCCCAAATTTATTGTACTAGAATGTGTCACATCCACCCAAAATCACTTATATTATAGGACGGAGAGAGTATAAATCTAGAAATTATATAAAGCCTCATTGTTTCACTTATTCGTGAAATAAGCGAAACGGCATATTTGCAAATGAAAAGTAATTTGTAAATAAAATTTTTATACATGTGTTCTTAGCGATCTAAAAGCAAAAACTGAAAAATAAACTTCGATGAAAAAAAAATCCCAAAAGCAGCTCGAAATTTAAGATTGAAAATTCATATTTTAGCTGATAAGCATAAACATAAGTGAAAAGATGAGGTCTTATGGTTTATATAAGCATAATAATGCATCTAGACTAATTCTATTATCATGCAAATTGTAATATTGAATCATCCAGACTATGTATGAACAAAACAAAGATATTTTACATACTGCACAACAAAAATGTTGTTTTAGAAGTAGAAAAAAACAAGAAACAAATGAATCGACTACATCTGGAGGAAAAGTGGTGCATGTTAGAAGTTCAAGATATACTGCGAGACTACGGGAATTACTAAGCAATCTTCAATATTTTTTTTTCAACAATCGAGATAGAAGTAAAAAGAAAAAAATAATGAAACATCAGGTGGTGGGTTTATTAGTATATAAAACAAATAAATGATACACACGCTTTAACATAAAACGTATATATTAATAATTATATGTTAAATATTATAAAAATGATAGATAGATTTGTTAAAATATTATGGAAATGATGTGAGGGTTGATGATTGGATATGCTTACATGTTGATTTGTAGAATTAAATAGATTGTAGATGATGTTACATGCTTGCATGAAGTTAAATATGTAATTGTTCCTAGTAGGTGATGATGTGGCATGGTTGCTTGTTGAGATTTAGACCTAATGGATTGTAACTTTATAGATAAAGTATGTAAAGTATGTGTGTGTGTGTGTGTATAGAGTGAATCTATTCTACACCCCACCCCTAGAATAACTATTCTACACCCCCACCCTCCCATGGGTCAAACCCACCTCCCCCACCCTTCCTAGGGCCCAAAACCCCCTTCCCACCTCGGTCAAAGCATCCTCCCGCCAATCAAACCCGCCCACCACTTTGCTGCTCTCGTCTTGCAGGAATCGTGCAGTAACAGGACGGTCATCGTGCAGTAACAAGACAACATTATCGCAATAACAACGTCAAAAAGTAGCCATGATGGATCTAGTTTTGTTAAGCGTTTTTTTATAAACTTCATGGTGCAAACAGATTGGAAATACAAGATATGATGTGAGAGATATTGCTCTCTAAAGATTGAGATTTACCTCTTTTTTTAGTCCTCGTCTCACTGGAATAGCGTAATAACACGATGGCCAATATGCAGTAACACTTCTGCTTTTCGCAGTAACAACGTTAAAAAATAGTTATGATAGTTCTAGTTTCGTTAAGCACTTTTCTTTTACGAACGCCATGATGTAAATGGGTTAGAAAAATAAGACATGACGTGTACATTAGTACTCTATAAAGATTGAGATTTAAAATACTCTAGATCTAAAAAACATTACTACTATAGGGCGGCCGCTGTTACTATGCAGGTTCTTTGTTACTACAAATTTCGTCATGTTGTTACTGCCAGTAACAAGATATAAATTTTGTAGTAACATATCATGTTACTACCCTTACATGGTAATGTTACTGCCGAATCATAATAACAATGTATGATTATTACAGTAACATAACTAGCTAATTTGTTCTCATAAAATTTGGACATACATACAAAGCAAGCAAACAATGATCAAATCACATAGTATCATAAGGAAAATTGGCTAGAAGAGTTTGCTATGAAACATGAGATCATGGGTTCAAGTCTTGGTTTGTCTTTAATTTTTAATTTTCTTTCAAGGTGAAGCAAAGGGAGAGAAGAGAAAGAAAAAGAAAACGAAAAAATAGAGAGGAGAGAAGGATCGGGAGGAAAAGAAAAAAAGGCAGGAGAGGAGGGAGAGAAAAACGAAAAAAGAGGGGGGAGAGAAGGATCGGGAGGAAAAGAAAAAAAGGCAGGAGAGGAGGGAGAGAAAAACGAAAAAAGAGGGGGAGAGAGGCAGATCGGGAGGGAGGAGAGAAGGATCAGGAGGAAAAGAAAAAAAAGGCAGGAGAGGAGGGAGAGAAAAACGAAAAAAGAGGGGGAGAGAGGCAGATCGGGAGGGAAGGATCGGGAGGAAAAGAAAAAAAGGCAGGAGAGGAGGGAGAGAAAAACGAAAAAAGAGGGGGAGAGAGGCAGATCGGGAGGGAGGAGAGAAGGATCAGGAGGAAAAGAAAAAAAAGGCAGGAGAGGAGGGAGAGAAAAACGAAAAAAGAGGGGGAGAGAGGCAGATCGGGAGGAGGGGGAGAGAGAGATCGGGAGGAAAAGAAAAAAAAGCACGAGAGGAGGGAAAAAAGAGGGGGAGAGAGGCGCGAGAGGAGGAGGGGCCGCGCGTGGGATGGGGAAAGGGAGGTGGGGACGGATGGGAGGGGGGAGGGGATGTAGAATAGTTATTCTAGGGAAGGGATCTATAATAGAGCTACTCTATATATATATATATATATATATATATATATATACACACACACACACATACAACCTTATAGTTCCTAATTCTAAAACATAGTAAATTTATTTCGAAATAAAAATAAATTCTAGAGAAAAAAGCTAAAGTGTCCATATATGGTACTCCTGATGTCATGTTTTAGAATGTCAGTGTTATCTATGAATGTACTGTACCTTGTGCATACATATATAATTTTTTACTACGTAATATAGGTACAATTTCACCAGGAAAGATTTCAGTCGTGCCGGCAGTAAGAGGTTTGGACACCGGAATGGGAAGAACATGGTCCCAACGGTGCTTGATTGGGCCATCAGGAAAAATGGATCGTGCCCATCAGCTGCAAGATCAGCTGCAGGACAGGTAGCTCCTGCCTGTGTCAGCGCAAACAGTAAGTGCGTCAATGTCACCAACGGGAATGGATACCTCTGCAAGTGCTCCGAGGGATACGCCGGCAATCCCTATGTTACCGGCAACGACGGATGCACAAGTTAGTTCTTAATTAATACGGAGTACTAGTATATATACTAATTGTAATTCTATGTTGTTTAACATATATTAAGGTTCG
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| CDS seq | ATGGGCAAAAACGACGAAATTCGCATACGACGACTAATTGCCATGCCACACATAGTAGTAGTTGTGCTATGCTGGTTTCTTCATGCTCCTGCAGCAGCGGCGACACTTTCTGATCTGGCAGTGCCGGCTACGCCGGCGCCGGCGCCGGTGCCGGCGGCGTGCCCGAGCAAGTGCGGCAACGTGGAGATCCCCTACCCATTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCACCATCAAATGCAACCATAGCTTTAGCCCTCCCAGGCCGTACACGGGCACCATAGAGATCAAGGACATCTCGCTGGAGGCAGGGGAGATGCGCGTCTACACTCATGTGGCCCACCAATGCTACGACTCATCACACCACGAGGAGCACGTCTCCACGCGGTTGAAGCTCCATGGCAAATCTCGCTTGTCGCGGAAAAGGAACGAGTTCACGGCGATCGGCTGCAACACGGTAGCGTTTCTGATTGGCAGGAAGAAAGGGAGCTACTCGACCGGATGCATCTCGACGTGCGCGAGCTTGGATAAGGCCGCCCACGACGGTGACCCATGTACGGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCGCCCAACCTTAGTGTCTTAAATATTTCCTGGGGTGACGGCTTCGACGACGACCTCGTGCGGGCAGACAGCCCCTGCAGCTACGCCTTCGTTGCCGAGAAAGGCTGGTACAATTTCACCAGGAAAGATTTCAGTCGTGCCGGCAGTAAGAGGTTTGGACACCGGAATGGGAAGAACATGGTCCCAACGGTGCTTGATTGGGCCATCAGGAAAAATGGATCGTGCCCATCAGCTGCAAGATCAGCTGCAGGACAGGTAGCTCCTGCCTGTGTCAGCGCAAACAGTAAGTGCGTCAATGTCACCAACGGGAATGGATACCTCTGCAAGTGCTCCGAGGGATACGCCGGCAATCCCTATGTTACCGGCAACGACGGATGCACAAGTTAG
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| Protein seq | MGKNDEIRIRRLIAMPHIVVVVLCWFLHAPAAAATLSDLAVPATPAPAPVPAACPSKCGNVEIPYPFGIGVDCAWPGFTIKCNHSFSPPRPYTGTIEIKDISLEAGEMRVYTHVAHQCYDSSHHEEHVSTRLKLHGKSRLSRKRNEFTAIGCNTVAFLIGRKKGSYSTGCISTCASLDKAAHDGDPCTGLGCCQVPSIPPNLSVLNISWGDGFDDDLVRADSPCSYAFVAEKGWYNFTRKDFSRAGSKRFGHRNGKNMVPTVLDWAIRKNGSCPSAARSAAGQVAPACVSANSKCVNVTNGNGYLCKCSEGYAGNPYVTGNDGCTS |
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| Function | Wall-associated receptor kinase 2 [UniProtKB/Swiss-Prot:Q9LMP1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0691600 | OsNip_11t0691600-01 | Chr11 | 28215210 | 28219238 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGCAAAAACGACGAAATTCGCATACGACGACTAATTGCCATGCCACACATAGTAGTAGTTGTGCTATGCTGGTTTCTTCATGCTCCTGCAGCAGCGGCGACACTTTCTGATCTGGCAGTGCCGGCTACGCCGGCGCCGGCGCCGGTGCCGGCGGCGTGCCCGAGCAAGTGCGGCAACGTGGAGATCCCCTACCCATTCGGCATCGGCGTCGACTGCGCCTGGCCGGGCTTCACCATCAAATGCAACCATAGCTTTAGCCCTCCCAGGCCGTACACGGGCACCATAGAGATCAAGGACATCTCGCTGGAGGCAGGGGAGATGCGCGTCTACACTCATGTGGCCCACCAATGCTACGACTCATCACACCACGAGGAGCACGTCTCCACGCGGTTGAAGCTCCATGGCAAATCTCGCTTGTCGCGGAAAAGGAACGAGTTCACGGCGATCGGCTGCAACACGGTAGCGTTTCTGATTGGCAGGAAGAAAGGGAGCTACTCGACCGGATGCATCTCGACGTGCGCGAGCTTGGATAAGGCCGCCCACGACGGTGACCCATGTACGGGGCTGGGTTGCTGCCAGGTGCCTTCCATCCCGCCCAACCTTAGTGTCTTAAATATTTCCTGGGGTGACGGCTTCGACGACGACCTCGTGCGGGCAGACAGCCCCTGCAGCTACGCCTTCGTTGCCGAGAAAGGCTGGTACAATTTCACCAGGAAAGATTTCAGTCGTGCCGGCAGTAAGAGGTTTGGACACCGGAATGGGAAGAACATGGTCCCAACGGTGCTTGATTGGGCCATCAGGAAAAATGGATCGTGCCCATCAGCTGCAAGATCAGCTGCAGGACAGGTAGCTCCTGCCTGTGTCAGCGCAAACAGTAAGTGCGTCAATGTCACCAACGGGAATGGATACCTCTGCAAGTGCTCCGAGGGATACGCCGGCAATCCCTATGTTACCGGCAACGACGGATGCACAAGTTAG
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| Protein seq | MGKNDEIRIRRLIAMPHIVVVVLCWFLHAPAAAATLSDLAVPATPAPAPVPAACPSKCGNVEIPYPFGIGVDCAWPGFTIKCNHSFSPPRPYTGTIEIKDISLEAGEMRVYTHVAHQCYDSSHHEEHVSTRLKLHGKSRLSRKRNEFTAIGCNTVAFLIGRKKGSYSTGCISTCASLDKAAHDGDPCTGLGCCQVPSIPPNLSVLNISWGDGFDDDLVRADSPCSYAFVAEKGWYNFTRKDFSRAGSKRFGHRNGKNMVPTVLDWAIRKNGSCPSAARSAAGQVAPACVSANSKCVNVTNGNGYLCKCSEGYAGNPYVTGNDGCTS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.220745 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0690332 | SBH | 1.591448 | 1.521705 | 0.750162 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g46950 | RBH | 0.064594 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0691600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024550 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024470 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024010 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023830 | SBH | 0.0 | 0.193654 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024360 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0443700 | SBH | 0.0665605 | 0.0833025 | 0.0615995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024670 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0441700 | SBH | 0.044294 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024620 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024840 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023940 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023810 | SBH | 2.759746 | 0.0 | 0.221914 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024260 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024250 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024470 | SBH | 0.0 | 1.171621 | 0.0 |
