Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0688000 | OGI:11082150 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:27908607-27909044 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCAAGCCTTGAGAGACTTGAGCTACGGTTCAGGATTTTCGAGGGACTTTTTGGCATACAAAACCTGGAAATCCTAAAAGAGGTGCATCTCCGGGTAAATTACAGAGCAGGTGAGGTCACCAAGTCCATCGTACAAAATGTGGCAACTCAAGTGAAGAAAGAGGCCACCAAAAGTGTGGCAACTGAAGCGAATAAAGAAAATGTAGCATCTGCAACGAACAAAGAGGGCACTGAGTTCATCATAGAAAATGTGACACTTGAAGCAAATGAAGCTACTGCCGCGATGAAAGAGGCCACCACGTCAACCGTAGAAAATGTGGCAACTGAAGGGAATAAAGAAAATGTGACAACTGACACGAATAAAGAAAATGTGGCAACTGCAGAGAAGAAAGAGGTCAAGGGGCCCATAATAATTGTTGATCAGTATTACGACTGA
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| CDS seq | ATGCCAAGCCTTGAGAGACTTGAGCTACGGTTCAGGATTTTCGAGGGACTTTTTGGCATACAAAACCTGGAAATCCTAAAAGAGGTGCATCTCCGGGTAAATTACAGAGCAGGTGAGGTCACCAAGTCCATCGTACAAAATGTGGCAACTCAAGTGAAGAAAGAGGCCACCAAAAGTGTGGCAACTGAAGCGAATAAAGAAAATGTAGCATCTGCAACGAACAAAGAGGGCACTGAGTTCATCATAGAAAATGTGACACTTGAAGCAAATGAAGCTACTGCCGCGATGAAAGAGGCCACCACGTCAACCGTAGAAAATGTGGCAACTGAAGGGAATAAAGAAAATGTGACAACTGACACGAATAAAGAAAATGTGGCAACTGCAGAGAAGAAAGAGGTCAAGGGGCCCATAATAATTGTTGATCAGTATTACGACTGA
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| Protein seq | MPSLERLELRFRIFEGLFGIQNLEILKEVHLRVNYRAGEVTKSIVQNVATQVKKEATKSVATEANKENVASATNKEGTEFIIENVTLEANEATAAMKEATTSTVENVATEGNKENVTTDTNKENVATAEKKEVKGPIIIVDQYYD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0688000 | OsNip_11t0688000-00 | Chr11 | 27908607 | 27909044 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCAAGCCTTGAGAGACTTGAGCTACGGTTCAGGATTTTCGAGGGACTTTTTGGCATACAAAACCTGGAAATCCTAAAAGAGGTGCATCTCCGGGTAAATTACAGAGCAGGTGAGGTCACCAAGTCCATCGTACAAAATGTGGCAACTCAAGTGAAGAAAGAGGCCACCAAAAGTGTGGCAACTGAAGCGAATAAAGAAAATGTAGCATCTGCAACGAACAAAGAGGGCACTGAGTTCATCATAGAAAATGTGACACTTGAAGCAAATGAAGCTACTGCCGCGATGAAAGAGGCCACCACGTCAACCGTAGAAAATGTGGCAACTGAAGGGAATAAAGAAAATGTGACAACTGACACGAATAAAGAAAATGTGGCAACTGCAGAGAAGAAAGAGGTCAAGGGGCCCATAATAATTGTTGATCAGTATTACGACTGA
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| Protein seq | MPSLERLELRFRIFEGLFGIQNLEILKEVHLRVNYRAGEVTKSIVQNVATQVKKEATKSVATEANKENVASATNKEGTEFIIENVTLEANEATAAMKEATTSTVENVATEGNKENVTTDTNKENVATAEKKEVKGPIIIVDQYYD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g46100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0688000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024450 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024320 | SBH | 0.0 | 2.155716 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013820 | SBH | 0.0 | 2.535378 | 0.250290 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023750 | SBH | 0.031370 | 0.014365 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024310 | SBH | 8.393654 | 11.443207 | 12.636646 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0441900 | SBH | 0.015122 | 5.1343875 | 0.003693 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022470 | SBH | 0.101046 | 0.720416 | 0.426970 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0438900 | SBH | 1.2510465 | 2.3554675 | 4.747685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024510 | RBH | 0.0 | 0.160680 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024530 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023860 | SBH | 3.115633 | 4.969689 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019500 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024140 | SBH | 0.323227 | 4.796237 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024150 | SBH | 0.672735 | 2.039785 | 0.923535 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024370 | SBH | 0.000000 | 1.067520 | 0.955904 |
