Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0013820 | OGI:11049000 | 8/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:16364069-16366179 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctccatcatgtggatcgtctatctgatgatgacgctaagaggctattccaagagagcgtgtctgaatccatgactagcagtgacaagatgctcggtcaggcgcacattgatgtctcgaggaaaatcttggacctctgcaagggtctgcctgtggccattgtaaccatagctggtcttgtggcttgcaagccacaggcatacgagaaacagtgtgccgagatctgcgtctccctgcctccagtatccgtggactgccataccccggaaggcatgacaaggatactcaactactgctacagcagcttacctgcagacctcaagacctgctcgctctacctgagcgtgttcccaaaggacagcaggatcagcaggaagcggttgacgaggcgatggatagcggaaggctttatcagcgaggagcacgggcagagcatgaaggaacgcgcggaaacaaacttcaatctgctcatccgaaggaacatattgaagcctgtggatcacagcagcgacgggaaagttaagacctgccaggttcatgacatgatcctcgagtacatcatgtccaagtccagcgaggagaactttatcaccgtggttggcgggcactggctcatgcggacacccagtaataaagttcgtcgcctgtccatccacagcagcgatgtgaagcatgccaaagaaaccatggacagaatgaacctgtcccatgtccgatcagtcacagtgtttgggagcttgaaccagctgcctttcatgtcgctcaagctcggcattgtacaggtgctggacctggaaggctgcaagggcttcaagaagcagcatgtcaaggacatcttcaagatgcttcttctcaaatatctcaacctccgaggaacagacatcaacagcatcccttccaagattgggaagctacggtacttagagacccttgacataagggacacgaatgtccagaagctgcctgatgccatcgttcagcttgaacggctgacgagtatactcggtggaaacacaatggcacaggtaacactcaagttgccagcggaggcaacgaagaagccgttgcgaacactgcacatcctgtccgggatcgagatcactggggagccgacgtccgttaatgatttccacgggtacactgcccttaggaagctcgggatacacaagctacaaatccaggagggtactcctggcttcaaggccttgctctcttccatccaataccttggaggtagctcgctcaagaatctcttgatcaatgatgagtgctccggtttcatcgacgcactggattctctgacctcaccaccgagatacttccattccctccagctgtacggcatgttcatcaaggtgcccaggtggattgctcatctcactgaactgaagaacttaaccctgtcagttacggtgctccgaactgataccttggagctccttcagaagctacctcgtatgttctgccttatattttcgtcctggacatccagcaaggaccttgatttggtggacattcttgaaaagaacaagtcggactcagaggggcagatcttggtcaagcatggagggttcgactgccttaagctgctccgcttggacgcgccgctcctgccattgctcgtcttctcggagagggccatgggcaacctcgaaaggcttgatatgaagttcaacacgctggaaggcgtcttcggcatggataacctcgcgagccttcgtgaggtgcacatgacggccggtgaaaaagccggtgagatcaccaagtcaatagtgcgtaagctggaggccgaggcaggtaaatacgccaatacaccaagagtggtcgtttacgagttagctggacgcggaagcaggtcacatacgccaaacgacccagagtagtcttctatgaattattatagctagtctctattcagaagtgctcgtcgtcgtcggtcatgtttgtgctgttctgttttagcttttgtagtgactggtgcttgtttgagtttacccaataagaatggttttcctatttggggatggtgccatggtggtgaatctgtcatcctgccattatatttagagtttctgagatttttgtaagagtggacagataaatcttttgt
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| CDS seq | atgctccatcatgtggatcgtctatctgatgatgacgctaagaggctattccaagagagcgtgtctgaatccatgactagcagtgacaagatgctcggtcaggcgcacattgatgtctcgaggaaaatcttggacctctgcaagggtctgcctgtggccattgtaaccatagctggtcttgtggcttgcaagccacaggcatacgagaaacagtgtgccgagatctgcgtctccctgcctccagtatccgtggactgccataccccggaaggcatgacaaggatactcaactactgctacagcagcttacctgcagacctcaagacctgctcgctctacctgagcgtgttcccaaaggacagcaggatcagcaggaagcggttgacgaggcgatggatagcggaaggctttatcagcgaggagcacgggcagagcatgaaggaacgcgcggaaacaaacttcaatctgctcatccgaaggaacatattgaagcctgtggatcacagcagcgacgggaaagttaagacctgccaggttcatgacatgatcctcgagtacatcatgtccaagtccagcgaggagaactttatcaccgtggttggcgggcactggctcatgcggacacccagtaataaagttcgtcgcctgtccatccacagcagcgatgtgaagcatgccaaagaaaccatggacagaatgaacctgtcccatgtccgatcagtcacagtgtttgggagcttgaaccagctgcctttcatgtcgctcaagctcggcattgtacaggtgctggacctggaaggctgcaagggcttcaagaagcagcatgtcaaggacatcttcaagatgcttcttctcaaatatctcaacctccgaggaacagacatcaacagcatcccttccaagattgggaagctacggtacttagagacccttgacataagggacacgaatgtccagaagctgcctgatgccatcgttcagcttgaacggctgacgagtatactcggtggaaacacaatggcacaggtaacactcaagttgccagcggaggcaacgaagaagccgttgcgaacactgcacatcctgtccgggatcgagatcactggggagccgacgtccgttaatgatttccacgggtacactgcccttaggaagctcgggatacacaagctacaaatccaggagggtactcctggcttcaaggccttgctctcttccatccaataccttggaggtagctcgctcaagaatctcttgatcaatgatgagtgctccggtttcatcgacgcactggattctctgacctcaccaccgagatacttccattccctccagctgtacggcatgttcatcaaggtgcccaggtggattgctcatctcactgaactgaagaacttaaccctgtcagttacggtgctccgaactgataccttggagctccttcagaagctacctcgtatgttctgccttatattttcgtcctggacatccagcaaggaccttgatttggtggacattcttgaaaagaacaagtcggactcagaggggcagatcttggtcaagcatggagggttcgactgccttaagctgctccgcttggacgcgccgctcctgccattgctcgtcttctcggagagggccatgggcaacctcgaaaggcttgatatgaagttcaacacgctggaaggcgtcttcggcatggataacctcgcgagccttcgtgaggtgcacatgacggccggtgaaaaagccggtgagatcaccaagtcaatagtgcgtaagctggaggccgaggcaggtaaatacgccaatacaccaagagtggtcgtttacgagttagctggacgcggaagcaggtcacatacgccaaacgacccagagtag
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| Protein seq | MLHHVDRLSDDDAKRLFQESVSESMTSSDKMLGQAHIDVSRKILDLCKGLPVAIVTIAGLVACKPQAYEKQCAEICVSLPPVSVDCHTPEGMTRILNYCYSSLPADLKTCSLYLSVFPKDSRISRKRLTRRWIAEGFISEEHGQSMKERAETNFNLLIRRNILKPVDHSSDGKVKTCQVHDMILEYIMSKSSEENFITVVGGHWLMRTPSNKVRRLSIHSSDVKHAKETMDRMNLSHVRSVTVFGSLNQLPFMSLKLGIVQVLDLEGCKGFKKQHVKDIFKMLLLKYLNLRGTDINSIPSKIGKLRYLETLDIRDTNVQKLPDAIVQLERLTSILGGNTMAQVTLKLPAEATKKPLRTLHILSGIEITGEPTSVNDFHGYTALRKLGIHKLQIQEGTPGFKALLSSIQYLGGSSLKNLLINDECSGFIDALDSLTSPPRYFHSLQLYGMFIKVPRWIAHLTELKNLTLSVTVLRTDTLELLQKLPRMFCLIFSSWTSSKDLDLVDILEKNKSDSEGQILVKHGGFDCLKLLRLDAPLLPLLVFSERAMGNLERLDMKFNTLEGVFGMDNLASLREVHMTAGEKAGEITKSIVRKLEAEAGKYANTPRVVVYELAGRGSRSHTPNDPE |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0013820 | OsCMeo_11g0013820.01 | Chr11 | 16364069 | 16366179 | + | NAM | ||
| CDS seq | atgctccatcatgtggatcgtctatctgatgatgacgctaagaggctattccaagagagcgtgtctgaatccatgactagcagtgacaagatgctcggtcaggcgcacattgatgtctcgaggaaaatcttggacctctgcaagggtctgcctgtggccattgtaaccatagctggtcttgtggcttgcaagccacaggcatacgagaaacagtgtgccgagatctgcgtctccctgcctccagtatccgtggactgccataccccggaaggcatgacaaggatactcaactactgctacagcagcttacctgcagacctcaagacctgctcgctctacctgagcgtgttcccaaaggacagcaggatcagcaggaagcggttgacgaggcgatggatagcggaaggctttatcagcgaggagcacgggcagagcatgaaggaacgcgcggaaacaaacttcaatctgctcatccgaaggaacatattgaagcctgtggatcacagcagcgacgggaaagttaagacctgccaggttcatgacatgatcctcgagtacatcatgtccaagtccagcgaggagaactttatcaccgtggttggcgggcactggctcatgcggacacccagtaataaagttcgtcgcctgtccatccacagcagcgatgtgaagcatgccaaagaaaccatggacagaatgaacctgtcccatgtccgatcagtcacagtgtttgggagcttgaaccagctgcctttcatgtcgctcaagctcggcattgtacaggtgctggacctggaaggctgcaagggcttcaagaagcagcatgtcaaggacatcttcaagatgcttcttctcaaatatctcaacctccgaggaacagacatcaacagcatcccttccaagattgggaagctacggtacttagagacccttgacataagggacacgaatgtccagaagctgcctgatgccatcgttcagcttgaacggctgacgagtatactcggtggaaacacaatggcacaggtaacactcaagttgccagcggaggcaacgaagaagccgttgcgaacactgcacatcctgtccgggatcgagatcactggggagccgacgtccgttaatgatttccacgggtacactgcccttaggaagctcgggatacacaagctacaaatccaggagggtactcctggcttcaaggccttgctctcttccatccaataccttggaggtagctcgctcaagaatctcttgatcaatgatgagtgctccggtttcatcgacgcactggattctctgacctcaccaccgagatacttccattccctccagctgtacggcatgttcatcaaggtgcccaggtggattgctcatctcactgaactgaagaacttaaccctgtcagttacggtgctccgaactgataccttggagctccttcagaagctacctcgtatgttctgccttatattttcgtcctggacatccagcaaggaccttgatttggtggacattcttgaaaagaacaagtcggactcagaggggcagatcttggtcaagcatggagggttcgactgccttaagctgctccgcttggacgcgccgctcctgccattgctcgtcttctcggagagggccatgggcaacctcgaaaggcttgatatgaagttcaacacgctggaaggcgtcttcggcatggataacctcgcgagccttcgtgaggtgcacatgacggccggtgaaaaagccggtgagatcaccaagtcaatagtgcgtaagctggaggccgaggcaggtaaatacgccaatacaccaagagtggtcgtttacgagttagctggacgcggaagcaggtcacatacgccaaacgacccagagtag
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| Protein seq | MLHHVDRLSDDDAKRLFQESVSESMTSSDKMLGQAHIDVSRKILDLCKGLPVAIVTIAGLVACKPQAYEKQCAEICVSLPPVSVDCHTPEGMTRILNYCYSSLPADLKTCSLYLSVFPKDSRISRKRLTRRWIAEGFISEEHGQSMKERAETNFNLLIRRNILKPVDHSSDGKVKTCQVHDMILEYIMSKSSEENFITVVGGHWLMRTPSNKVRRLSIHSSDVKHAKETMDRMNLSHVRSVTVFGSLNQLPFMSLKLGIVQVLDLEGCKGFKKQHVKDIFKMLLLKYLNLRGTDINSIPSKIGKLRYLETLDIRDTNVQKLPDAIVQLERLTSILGGNTMAQVTLKLPAEATKKPLRTLHILSGIEITGEPTSVNDFHGYTALRKLGIHKLQIQEGTPGFKALLSSIQYLGGSSLKNLLINDECSGFIDALDSLTSPPRYFHSLQLYGMFIKVPRWIAHLTELKNLTLSVTVLRTDTLELLQKLPRMFCLIFSSWTSSKDLDLVDILEKNKSDSEGQILVKHGGFDCLKLLRLDAPLLPLLVFSERAMGNLERLDMKFNTLEGVFGMDNLASLREVHMTAGEKAGEITKSIVRKLEAEAGKYANTPRVVVYELAGRGSRSHTPNDPE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.535378 | 0.250290 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0480000 | SBH | 0.087538 | 0.599750 | 0.427907 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29050 | RBH | 0.072129 | 0.441411 | 0.100660 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0480000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013900 | RBH | 0.0 | 2.967739 | 0.525254 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024320 | RBH | 0.0 | 2.155716 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013920 | RBH | 0.0 | 0.0 | 0.619011 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013880 | RBH | 0.0 | 0.100890 | 0.058189 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0272300 | RBH | 0.020537 | 0.430618 | 0.0410875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024510 | RBH | 0.0 | 0.160680 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019700 | SBH | 0.0 | 24.861574 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023770 | SBH | 0.237856 | 0.0 | 0.151067 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024140 | SBH | 0.323227 | 4.796237 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024150 | SBH | 0.672735 | 2.039785 | 0.923535 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022300 | SBH | 0.259339 | 14.287988 | 2.330554 |
