Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0681300 | OGI:01011440 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:27565072-27567357 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAAATTTACCTAATAATGAAGTGCATATATTCAGAAACGATAGAGAGATGAAATATTTCAAGTACTTAATACTACTGAATAGAATATGCTGTACACATTTTAATAAATATATTACCTCCATTTGTCTAGAGTTCTGAATATTGATAAGCTGTTTATCTTTTGATATAACATTTTTGGTCCTTGTCTTTCTCCTTCTTCGACTTTGTACTTCAATTGTAGATTCTTGTTGCTTCTTCATTCTCAATCTCCTTACCACTTGATCCAATTTTGATTGTTTTCTCAGTGAAGGAGGACGACCTCTTCTACGAACTGATATTGGGCTTAGCACCATTTTTCCTTGTTTCAGCACCATATCTTTATTCTTCCCATTTTGCTGATATTCCTGAATTTCCTTGCTGCCATGGTGTGCATCAATCTTTATTTGCAATTCATTTAGGCCATCCATCACTAAATTGCACAATGCATCTGAAACTGAACCATTCTCTGCCACTTCATTAAAACGCTTGCACAACGTATCAAAACGCCTAACAATTGGCGTGTCAAGCTGATCATCATAGGAGCATTTAATAAATGTGTGCTTGCGCTTGAAATCCTTTCTCCATCGTTGTAGTATATATTTGGAAGGGACTTTTTCTATATCAACAAGAGGGAGTATTGAAAGGATATGTCTACACAAGATCCCTCGGAATTCGAAATGCCGACATTCACAATGCAAGTCACAATCCTCTTGGTTGAACAAAACAAGTAACTCTGAAACAACCCTTTGCTCTCCAATTTTTCGGTCCTCTCTGACACTGAAAGTATGAACCAACCCTTCTGTCTTCCGAAGAGTTGCATAGTAGTAGATTTTGCCTCTTAGCTCATCCTGAAACTCTTTAAACTTCTTGTTGGTATATGCCACCTGAAATTGCCTCTCAAATTCATAGTGAGTAATGCAAGGAATTGCCTCTTGGAATGATTTACAATCAGACTTGTTTTCTTTCTCTACTTTGTCTCTTAGTGCATTGTCATATTGCTCCACAAATTGCTTAAGTGTGGTTCTAGCATTAACATAACCATCAAAGAAGGCATTCACACTCTCACTCCTTTGCGACGAAGACATTCCAGCCCAAAATGTGTCTTTCACATAAGCCGGCACCCATAATTCCCTGTTATCATATAACCCAGCAAGCCATTCATTATCCTGTAAGCTAAATTCATCAATCATTTTCATCCATCCCTTATCAAAATCATCTCTGTTTAATGAATCATACACCACATTAGACAATGTAGAGCTAATAACTTCATATTCTAAGTACCCACCAAGTTTTTCAGGAATCTTCTTCATGATATGCCACAAACACCATCTGTGTCGAGCTTCAGGAAATACTTCCATAATAGCATTTTGCATTGCTCTGCACTGATCGGTAATTATGGCGTTTGGTGCTTTATTTGACATACATGATAACCATGATCTGAATAACCAAACAAAAGTCTCAGTTTCTTCATTTGATAGCAGAGCACATCCTAATAGAACTGATTCCCCGTGATGATTTACACCGACAAAAGGAGCAAATGGCATATGGTACTTGTTAGTCAAGTACGTAGTGTCAAATGTCACAACATCTGAAAAAGATTCATAGGTAGCCCTACTTCTTGCATCCACCCATAAAACATTTTTTAGTCGAGAGTCCTCATCCACGTCCATGACATAGAAAAAGTTTGGATCTTTGGACGTCATACGCAGGAAATACTGATAAACTGCATGTGCATCTCCAGCACCAAGCTTAAGCTTTCGTACATCTTGCAAATAATTTCTGCACTCCTTTTCACCAAATTGAAGATTCTCATAGCCTCCAGCTTGCATAACTAGAGAACTAAAATTCTTGTTTATACGAATTCTTGCTTGGTCATTCAACTCTAGCCTTCTCTTAGCTTGCAAATCAAGTTTCTTGTGACATCTGAGATGTCTTGCTTTGCTAGGACTTACAACATGATTATGGTCAAGAGTAAGCGTACTAATGCAGAATTTCTCATCATGAAGATAAAAGTTAACTTTAGCTGGGCACTGCTGCCTTGTGGAGGGGTTAGGCTTGAATTTATTTGTTGATGTGTACTGTGCCTTACCTTGTCTGCTACAAGCAAGTGTGAAATATCTCACCTTGCCATCCTCAGTTTTCTTAGATCCTCTTTTTATCACACCGAATCCTAACTTTCGAGCATAACTTAATGTAAAAGCAAGTGGCACTATCCTCACTATCAAATAGCATACCTTTGGTTGGCTCCAACAGTTTGGTTTTATCTG
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| CDS seq | CAGATAAAACCAAACTGTTGGAGCCAACCAAAGGTATGCTATTTGATAGTGAGGATAGTGCCACTTGCTTTTACATTAAGTTATGCTCGAAAGTTAGGATTCGGTGTGATAAAAAGAGGATCTAAGAAAACTGAGGATGGCAAGGTGAGATATTTCACACTTGCTTGTAGCAGACAAGGTAAGGCACAGTACACATCAACAAATAAATTCAAGCCTAACCCCTCCACAAGGCAGCAGTGCCCAGCTAAAGTTAACTTTTATCTTCATGATGAGAAATTCTGCATTAGTACGCTTACTCTTGACCATAATCATGTTGTAAGTCCTAGCAAAGCAAGACATCTCAGATGTCACAAGAAACTTGATTTGCAAGCTAAGAGAAGGCTAGAGTTGAATGACCAAGCAAGAATTCGTATAAACAAGAATTTTAGTTCTCTAGTTATGCAAGCTGGAGGCTATGAGAATCTTCAATTTGGTGAAAAGGAGTGCAGAAATTATTTGCAAGATGTACGAAAGCTTAAGCTTGGTGCTGGAGATGCACATGCAGTTTATCAGTATTTCCTGCGTATGACGTCCAAAGATCCAAACTTTTTCTATGTCATGGACGTGGATGAGGACTCTCGACTAAAAAATGTTTTATGGGTGGATGCAAGAAGTAGGGCTACCTATGAATCTTTTTCAGATGTTGTGACATTTGACACTACGTACTTGACTAACAAGTACCATATGCCATTTGCTCCTTTTGTCGGTGTAAATCATCACGGGGAATCAGTTCTATTAGGATGTGCTCTGCTATCAAATGAAGAAACTGAGACTTTTGTTTGGTTATTCAGATCATGGTTATCATGTATGTCAAATAAAGCACCAAACGCCATAATTACCGATCAGTGCAGAGCAATGCAAAATGCTATTATGGAAGTATTTCCTGAAGCTCGACACAGATGGTGTTTGTGGCATATCATGAAGAAGATTCCTGAAAAACTTGGTGGGTACTTAGAATATGAAGTTATTAGCTCTACATTGTCTAATGTGGTGTATGATTCATTAAACAGAGATGATTTTGATAAGGGATGGATGAAAATGATTGATGAATTTAGCTTACAGGATAATGAATGGCTTGCTGGGTTATATGATAACAGGGAATTATGGGTGCCGGCTTATGTGAAAGACACATTTTGGGCTGGAATGTCTTCGTCGCAAAGGAGTGAGAGTGTGAATGCCTTCTTTGATGGTTATGTTAATGCTAGAACCACACTTAAGCAATTTGTGGAGCAATATGACAATGCACTAAGAGACAAAGTAGAGAAAGAAAACAAGTCTGATTGTAAATCATTCCAAGAGGCAATTCCTTGCATTACTCACTATGAATTTGAGAGGCAATTTCAGGTGGCATATACCAACAAGAAGTTTAAAGAGTTTCAGGATGAGCTAAGAGGCAAAATCTACTACTATGCAACTCTTCGGAAGACAGAAGGGTTGGTTCATACTTTCAGTGTCAGAGAGGACCGAAAAATTGGAGAGCAAAGGGTTGTTTCAGAGTTACTTGTTTTGTTCAACCAAGAGGATTGTGACTTGCATTGTGAATGTCGGCATTTCGAATTCCGAGGGATCTTGTGTAGACATATCCTTTCAATACTCCCTCTTGTTGATATAGAAAAAGTCCCTTCCAAATATATACTACAACGATGGAGAAAGGATTTCAAGCGCAAGCACACATTTATTAAATGCTCCTATGATGATCAGCTTGACACGCCAATTGTTAGGCGTTTTGATACGTTGTGCAAGCGTTTTAATGAAGTGGCAGAGAATGGTTCAGTTTCAGATGCATTGTGCAATTTAGTGATGGATGGCCTAAATGAATTGCAAATAAAGATTGATGCACACCATGGCAGCAAGGAAATTCAGGAATATCAGCAAAATGGGAAGAATAAAGATATGGTGCTGAAACAAGGAAAAATGGTGCTAAGCCCAATATCAGTTCGTAGAAGAGGTCGTCCTCCTTCACTGAGAAAACAATCAAAATTGGATCAAGTGGTAAGGAGATTGAGAATGAAGAAGCAACAAGAATCTACAATTGAAGTACAAAGTCGAAGAAGGAGAAAGACAAGGACCAAAAATGTTATATCAAAAGATAAACAGCTTATCAATATTCAGAACTCTAGACAAATGGAGGTAATATATTTATTAAAATGTGTACAGCATATTCTATTCAGTAGTATTAAGTACTTGAAATATTTCATCTCTCTATCGTTTCTGAATATATGCACTTCATTATTAGGTAAATTTTGA
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| Protein seq | QIKPNCWSQPKVCYLIVRIVPLAFTLSYARKLGFGVIKRGSKKTEDGKVRYFTLACSRQGKAQYTSTNKFKPNPSTRQQCPAKVNFYLHDEKFCISTLTLDHNHVVSPSKARHLRCHKKLDLQAKRRLELNDQARIRINKNFSSLVMQAGGYENLQFGEKECRNYLQDVRKLKLGAGDAHAVYQYFLRMTSKDPNFFYVMDVDEDSRLKNVLWVDARSRATYESFSDVVTFDTTYLTNKYHMPFAPFVGVNHHGESVLLGCALLSNEETETFVWLFRSWLSCMSNKAPNAIITDQCRAMQNAIMEVFPEARHRWCLWHIMKKIPEKLGGYLEYEVISSTLSNVVYDSLNRDDFDKGWMKMIDEFSLQDNEWLAGLYDNRELWVPAYVKDTFWAGMSSSQRSESVNAFFDGYVNARTTLKQFVEQYDNALRDKVEKENKSDCKSFQEAIPCITHYEFERQFQVAYTNKKFKEFQDELRGKIYYYATLRKTEGLVHTFSVREDRKIGEQRVVSELLVLFNQEDCDLHCECRHFEFRGILCRHILSILPLVDIEKVPSKYILQRWRKDFKRKHTFIKCSYDDQLDTPIVRRFDTLCKRFNEVAENGSVSDALCNLVMDGLNELQIKIDAHHGSKEIQEYQQNGKNKDMVLKQGKMVLSPISVRRRGRPPSLRKQSKLDQVVRRLRMKKQQESTIEVQSRRRRKTRTKNVISKDKQLINIQNSRQMEVIYLLKCVQHILFSSIKYLKYFISLSFLNICTSLLGKF |
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| Function | Protein FAR-RED IMPAIRED RESPONSE 1 [UniProtKB/Swiss-Prot:Q9SWG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0681300 | OsNip_11t0681300-00 | Chr11 | 27565072 | 27567357 | - | RAP2018-11-26 | ||
| CDS seq | CAGATAAAACCAAACTGTTGGAGCCAACCAAAGGTATGCTATTTGATAGTGAGGATAGTGCCACTTGCTTTTACATTAAGTTATGCTCGAAAGTTAGGATTCGGTGTGATAAAAAGAGGATCTAAGAAAACTGAGGATGGCAAGGTGAGATATTTCACACTTGCTTGTAGCAGACAAGGTAAGGCACAGTACACATCAACAAATAAATTCAAGCCTAACCCCTCCACAAGGCAGCAGTGCCCAGCTAAAGTTAACTTTTATCTTCATGATGAGAAATTCTGCATTAGTACGCTTACTCTTGACCATAATCATGTTGTAAGTCCTAGCAAAGCAAGACATCTCAGATGTCACAAGAAACTTGATTTGCAAGCTAAGAGAAGGCTAGAGTTGAATGACCAAGCAAGAATTCGTATAAACAAGAATTTTAGTTCTCTAGTTATGCAAGCTGGAGGCTATGAGAATCTTCAATTTGGTGAAAAGGAGTGCAGAAATTATTTGCAAGATGTACGAAAGCTTAAGCTTGGTGCTGGAGATGCACATGCAGTTTATCAGTATTTCCTGCGTATGACGTCCAAAGATCCAAACTTTTTCTATGTCATGGACGTGGATGAGGACTCTCGACTAAAAAATGTTTTATGGGTGGATGCAAGAAGTAGGGCTACCTATGAATCTTTTTCAGATGTTGTGACATTTGACACTACGTACTTGACTAACAAGTACCATATGCCATTTGCTCCTTTTGTCGGTGTAAATCATCACGGGGAATCAGTTCTATTAGGATGTGCTCTGCTATCAAATGAAGAAACTGAGACTTTTGTTTGGTTATTCAGATCATGGTTATCATGTATGTCAAATAAAGCACCAAACGCCATAATTACCGATCAGTGCAGAGCAATGCAAAATGCTATTATGGAAGTATTTCCTGAAGCTCGACACAGATGGTGTTTGTGGCATATCATGAAGAAGATTCCTGAAAAACTTGGTGGGTACTTAGAATATGAAGTTATTAGCTCTACATTGTCTAATGTGGTGTATGATTCATTAAACAGAGATGATTTTGATAAGGGATGGATGAAAATGATTGATGAATTTAGCTTACAGGATAATGAATGGCTTGCTGGGTTATATGATAACAGGGAATTATGGGTGCCGGCTTATGTGAAAGACACATTTTGGGCTGGAATGTCTTCGTCGCAAAGGAGTGAGAGTGTGAATGCCTTCTTTGATGGTTATGTTAATGCTAGAACCACACTTAAGCAATTTGTGGAGCAATATGACAATGCACTAAGAGACAAAGTAGAGAAAGAAAACAAGTCTGATTGTAAATCATTCCAAGAGGCAATTCCTTGCATTACTCACTATGAATTTGAGAGGCAATTTCAGGTGGCATATACCAACAAGAAGTTTAAAGAGTTTCAGGATGAGCTAAGAGGCAAAATCTACTACTATGCAACTCTTCGGAAGACAGAAGGGTTGGTTCATACTTTCAGTGTCAGAGAGGACCGAAAAATTGGAGAGCAAAGGGTTGTTTCAGAGTTACTTGTTTTGTTCAACCAAGAGGATTGTGACTTGCATTGTGAATGTCGGCATTTCGAATTCCGAGGGATCTTGTGTAGACATATCCTTTCAATACTCCCTCTTGTTGATATAGAAAAAGTCCCTTCCAAATATATACTACAACGATGGAGAAAGGATTTCAAGCGCAAGCACACATTTATTAAATGCTCCTATGATGATCAGCTTGACACGCCAATTGTTAGGCGTTTTGATACGTTGTGCAAGCGTTTTAATGAAGTGGCAGAGAATGGTTCAGTTTCAGATGCATTGTGCAATTTAGTGATGGATGGCCTAAATGAATTGCAAATAAAGATTGATGCACACCATGGCAGCAAGGAAATTCAGGAATATCAGCAAAATGGGAAGAATAAAGATATGGTGCTGAAACAAGGAAAAATGGTGCTAAGCCCAATATCAGTTCGTAGAAGAGGTCGTCCTCCTTCACTGAGAAAACAATCAAAATTGGATCAAGTGGTAAGGAGATTGAGAATGAAGAAGCAACAAGAATCTACAATTGAAGTACAAAGTCGAAGAAGGAGAAAGACAAGGACCAAAAATGTTATATCAAAAGATAAACAGCTTATCAATATTCAGAACTCTAGACAAATGGAGGTAATATATTTATTAAAATGTGTACAGCATATTCTATTCAGTAGTATTAAGTACTTGAAATATTTCATCTCTCTATCGTTTCTGAATATATGCACTTCATTATTAGGTAAATTTTGA
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| Protein seq | QIKPNCWSQPKVCYLIVRIVPLAFTLSYARKLGFGVIKRGSKKTEDGKVRYFTLACSRQGKAQYTSTNKFKPNPSTRQQCPAKVNFYLHDEKFCISTLTLDHNHVVSPSKARHLRCHKKLDLQAKRRLELNDQARIRINKNFSSLVMQAGGYENLQFGEKECRNYLQDVRKLKLGAGDAHAVYQYFLRMTSKDPNFFYVMDVDEDSRLKNVLWVDARSRATYESFSDVVTFDTTYLTNKYHMPFAPFVGVNHHGESVLLGCALLSNEETETFVWLFRSWLSCMSNKAPNAIITDQCRAMQNAIMEVFPEARHRWCLWHIMKKIPEKLGGYLEYEVISSTLSNVVYDSLNRDDFDKGWMKMIDEFSLQDNEWLAGLYDNRELWVPAYVKDTFWAGMSSSQRSESVNAFFDGYVNARTTLKQFVEQYDNALRDKVEKENKSDCKSFQEAIPCITHYEFERQFQVAYTNKKFKEFQDELRGKIYYYATLRKTEGLVHTFSVREDRKIGEQRVVSELLVLFNQEDCDLHCECRHFEFRGILCRHILSILPLVDIEKVPSKYILQRWRKDFKRKHTFIKCSYDDQLDTPIVRRFDTLCKRFNEVAENGSVSDALCNLVMDGLNELQIKIDAHHGSKEIQEYQQNGKNKDMVLKQGKMVLSPISVRRRGRPPSLRKQSKLDQVVRRLRMKKQQESTIEVQSRRRRKTRTKNVISKDKQLINIQNSRQMEVIYLLKCVQHILFSSIKYLKYFISLSFLNICTSLLGKF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45530 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0681300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008850 | SBH | 0.0 | 0.0 | 0.365327 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008740 | SBH | 0.0 | 0.000000 | 0.476553 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008730 | SBH | 0.941579 | 1.310680 | 1.570465 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023970 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008670 | SBH | 0.0 | 0.000000 | 1.821755 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021450 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008760 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023430 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008770 | SBH | 0.048452 | 0.682172 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017300 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021240 | RBH | 0.0 | 0.0 | 0.000000 |
