Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0008740 | OGI:11022530 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:7680583-7683328 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gacaggtagggcaaataggttaatcatgttcttgattctgaacagatgataatacaaactactatctccatcctcataatataaaggattttgataatcaaatcataaggggagtgcacctctaagctaggagataacaagaattctctctctaatacttggcaagcacgcgctagctaattgacccatctggaccctatctctgttcttcctgctgctctcttgtgcggttgtgccccatgtagcccaaggaccatatggcagatggtcttggttcttcattgacaacgaggcaaacgataggagttctggtacagtaatagagtcttttctcttcaaatgaagctgtggttgagtgggtgactaatggaggacatagtgcagttatgttgttgcttcctgtaattctgctcatgcagagtgatgatgaattagaacatgatataaattgatgcataccatgaagcaatgacaaagtcgatacgtccatacctcttaaaatggcaaaaaacatgtacaatgacaaactatgcagttgcccttttggcaaagtgcatccagttccacatcagtcctgaatggtgacagcagcatgttcatggacatgatccttataagtctgccacctagtgaaaaataatgttgaagttacaacaaacaaattatctcatttgcatataactgattactgaaatgttgacaacaccaaaagacatggcaccacatcagcagtttgacacatcaaactattccagatttgtcaagccgaataagacaaaagatcaggacataagaagttgactaatacctgattattttagatgggcttcactttgaggcaaaatctcagcaaatgccttctgcaaagcctccttggcagttttgtaaatctcctcagatgttgcaccttcctctgcaaatctgataccatcacggcacaaatcattacaccgccaagccaaagacccttttgtgTttgccggaacttgagataatatgttgttcttggcatttcttgtccacctcttcaaaatataattttcaggaagcactggtatgccaatagctgtcaaaacccttagtgcatgccggcacagcacaccagcaaactcaaatttgtgacaactgcaagatacgctcgcacgtggttcactataaagaacagtgtatcttatattggcattttcagattgtgttacctcaaatctgcttatgtccccactttcaacattctgcaccaaaaaccccgatgattcaataagctcatcctgaaacaagtcaaacataactttggtgtagagctctgatgcttgtttttccattggatgtgaagacttcattaccggcttgctactgaaagtcgcaaagtcttcctggagttcagTTtgataatcccttgctatagccttatcaaactgaaatgcaatatctcgcagggtagtggtagtgatggagctcctctgaaaaaacttgaacatcgtctccaacttcggggcattgattatctcaccaaagaagctatccttcagataggcaggcacccactggtgacggatactgtatattgtttgcaaccactcgttcccgaaaagattgtatttgctaagcaacatcctccaagtcgactcgaactcatcgatcctttccaattcagttacacattccttcaattcatctttcagtgtcgaatgctccgaatacaaactggccaatttctgcttgcagatgaagaagatgtcccgtcggcaaaaccggtgcctaacatcaccaccaaagaccttcatggcagccatctcgacatctctactgtaaccgatcgtgaacgacatcggcttcttcccacccatgaaagcaagccatgtctcgaacaaccacgcgaaggaattctcgctctcgtcggtcatgagggcgcagccgaacacgatagcctgcctatgatggttcatcccggtgaacgccgcgaacggcacggcgcggcggttcctcctgcaggtgagatcgagcaccacggcgtccccgaaccgtcggtacagtgacctcgcgcgcgcatccacccagatgaaattggcaatgcagccgctccggtcgatctggacggcgtagcagaaggccggattgtccagctgcagcttcctgaagtggtcgaggagcccctgcgcgacgccgcctcccggcgccagcgcCGcggccgccgccgcggcgccgccatcctgttcggccgatgaggagtcgttgggctcggccgcgtcggtggctgcggcgtcggcggaggaggaggaggaggcgagggggtgggagtggaggaggacgcagcgggagacgagccagcgggaggaagggcggcggttgacctggagcatggcggggcaggcggcgcgggcggaggcgcggttgcggcgcttcttggaggcgtcgaggagggtgtccttgcgggaggggaggccctggcgggtgcacacgaagcgccgcatgatgatggcgtcgtcgatgcgcgacgcgaacgacttgctgctccggacgcggaaccccgcccgcgccgcgtacgtgcagtagaacgccctcgcctcctccggcgacgcgaactccatccccgccgccggctcccccgcggaggacgggcccgtgaccgccgccgcatcctcgtcgcccgcggcgcccagcggcatgaccgcagttcgaggaggaggaggggagattcgttgccggtgaggggaggagggcgaggcggcggcggccggcggcgaga
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| CDS seq | atgccgctgggcgccgcgggcgacgaggatgcggcggcggtcacgggcccgtcctccgcgggggagccggcggcggggatggagttcgcgtcgccggaggaggcgagggcgttctactgcacgtacgcggcgcgggcggggttccgcgtccggagcagcaagtcgttcgcgtcgcgcatcgacgacgccatcatcatgcggcgcttcgtgtgcacccgccagggcctcccctcccgcaaggacaccctcctcgacgcctccaagaagcgccgcaaccgcgcctccgcccgcgccgcctgccccgccatgctccaggtcaaccgccgcccttcctcccgctggctcgtctcccgctgcgtcctcctccactcccaccccctcgcctcctcctcctcctccgccgacgccgcagccaccgacgcggccgagcccaacgactcctcatcggccgaacaggatggcggcgccgcggcggcggccgCGgcgctggcgccgggaggcggcgtcgcgcaggggctcctcgaccacttcaggaagctgcagctggacaatccggccttctgctacgccgtccagatcgaccggagcggctgcattgccaatttcatctgggtggatgcgcgcgcgaggtcactgtaccgacggttcggggacgccgtggtgctcgatctcacctgcaggaggaaccgccgcgccgtgccgttcgcggcgttcaccgggatgaaccatcataggcaggctatcgtgttcggctgcgccctcatgaccgacgagagcgagaattccttcgcgtggttgttcgagacatggcttgctttcatgggtgggaagaagccgatgtcgttcacgatcggttacagtagagatgtcgagatggctgccatgaaggtctttggtggtgatgttaggcaccggttttgccgacgggacatcttcttcatctgcaagcagaaattggccagtttgtattcggagcattcgacactgaaagatgaattgaaggaatgtgtaactgaattggaaaggatcgatgagttcgagtcgacttggaggatgttgcttagcaaatacaatcttttcgggaacgagtggttgcaaacaatatacagtatccgtcaccagtgggtgcctgcctatctgaaggatagcttctttggtgagataatcaatgccccgaagttggagacgatgttcaagttttttcagaggagctccatcactaccactaccctgcgagatattgcatttcagtttgataaggctatagcaagggattatcaAActgaactccaggaagactttgcgactttcagtagcaagccggtaatgaagtcttcacatccaatggaaaaacaagcatcagagctctacaccaaagttatgtttgacttgtttcaggatgagcttattgaatcatcggggtttttggtgcagaatgttgaaaaggaaggtgcaacatctgaggagatttacaaaactgccaaggaggctttgcagaaggcatttgctgagattttgcctcaaagaagcaacaacataactgcactatgtcctccattagtcacccactcaaccacagcttcatttgaagagaaaagactctattactgtaccagaactcctatcgtttgcctcgttgtcaatgaagaaccaagaccatctgccatatggtccttgggctacatggggcacaaccgcacaagagagcagcaggaagaacagagatag
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| Protein seq | MPLGAAGDEDAAAVTGPSSAGEPAAGMEFASPEEARAFYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLLDASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCVLLHSHPLASSSSSADAAATDAAEPNDSSSAEQDGGAAAAAAALAPGGGVAQGLLDHFRKLQLDNPAFCYAVQIDRSGCIANFIWVDARARSLYRRFGDAVVLDLTCRRNRRAVPFAAFTGMNHHRQAIVFGCALMTDESENSFAWLFETWLAFMGGKKPMSFTIGYSRDVEMAAMKVFGGDVRHRFCRRDIFFICKQKLASLYSEHSTLKDELKECVTELERIDEFESTWRMLLSKYNLFGNEWLQTIYSIRHQWVPAYLKDSFFGEIINAPKLETMFKFFQRSSITTTTLRDIAFQFDKAIARDYQTELQEDFATFSSKPVMKSSHPMEKQASELYTKVMFDLFQDELIESSGFLVQNVEKEGATSEEIYKTAKEALQKAFAEILPQRSNNITALCPPLVTHSTTASFEEKRLYYCTRTPIVCLVVNEEPRPSAIWSLGYMGHNRTREQQEEQR |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0008740 | OsKeNa_11g0008740.01 | Chr11 | 7680583 | 7683328 | - | NAM | ||
| CDS seq | atgccgctgggcgccgcgggcgacgaggatgcggcggcggtcacgggcccgtcctccgcgggggagccggcggcggggatggagttcgcgtcgccggaggaggcgagggcgttctactgcacgtacgcggcgcgggcggggttccgcgtccggagcagcaagtcgttcgcgtcgcgcatcgacgacgccatcatcatgcggcgcttcgtgtgcacccgccagggcctcccctcccgcaaggacaccctcctcgacgcctccaagaagcgccgcaaccgcgcctccgcccgcgccgcctgccccgccatgctccaggtcaaccgccgcccttcctcccgctggctcgtctcccgctgcgtcctcctccactcccaccccctcgcctcctcctcctcctccgccgacgccgcagccaccgacgcggccgagcccaacgactcctcatcggccgaacaggatggcggcgccgcggcggcggccgCGgcgctggcgccgggaggcggcgtcgcgcaggggctcctcgaccacttcaggaagctgcagctggacaatccggccttctgctacgccgtccagatcgaccggagcggctgcattgccaatttcatctgggtggatgcgcgcgcgaggtcactgtaccgacggttcggggacgccgtggtgctcgatctcacctgcaggaggaaccgccgcgccgtgccgttcgcggcgttcaccgggatgaaccatcataggcaggctatcgtgttcggctgcgccctcatgaccgacgagagcgagaattccttcgcgtggttgttcgagacatggcttgctttcatgggtgggaagaagccgatgtcgttcacgatcggttacagtagagatgtcgagatggctgccatgaaggtctttggtggtgatgttaggcaccggttttgccgacgggacatcttcttcatctgcaagcagaaattggccagtttgtattcggagcattcgacactgaaagatgaattgaaggaatgtgtaactgaattggaaaggatcgatgagttcgagtcgacttggaggatgttgcttagcaaatacaatcttttcgggaacgagtggttgcaaacaatatacagtatccgtcaccagtgggtgcctgcctatctgaaggatagcttctttggtgagataatcaatgccccgaagttggagacgatgttcaagttttttcagaggagctccatcactaccactaccctgcgagatattgcatttcagtttgataaggctatagcaagggattatcaAActgaactccaggaagactttgcgactttcagtagcaagccggtaatgaagtcttcacatccaatggaaaaacaagcatcagagctctacaccaaagttatgtttgacttgtttcaggatgagcttattgaatcatcggggtttttggtgcagaatgttgaaaaggaaggtgcaacatctgaggagatttacaaaactgccaaggaggctttgcagaaggcatttgctgagattttgcctcaaagaagcaacaacataactgcactatgtcctccattagtcacccactcaaccacagcttcatttgaagagaaaagactctattactgtaccagaactcctatcgtttgcctcgttgtcaatgaagaaccaagaccatctgccatatggtccttgggctacatggggcacaaccgcacaagagagcagcaggaagaacagagatag
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| Protein seq | MPLGAAGDEDAAAVTGPSSAGEPAAGMEFASPEEARAFYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLLDASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCVLLHSHPLASSSSSADAAATDAAEPNDSSSAEQDGGAAAAAAALAPGGGVAQGLLDHFRKLQLDNPAFCYAVQIDRSGCIANFIWVDARARSLYRRFGDAVVLDLTCRRNRRAVPFAAFTGMNHHRQAIVFGCALMTDESENSFAWLFETWLAFMGGKKPMSFTIGYSRDVEMAAMKVFGGDVRHRFCRRDIFFICKQKLASLYSEHSTLKDELKECVTELERIDEFESTWRMLLSKYNLFGNEWLQTIYSIRHQWVPAYLKDSFFGEIINAPKLETMFKFFQRSSITTTTLRDIAFQFDKAIARDYQTELQEDFATFSSKPVMKSSHPMEKQASELYTKVMFDLFQDELIESSGFLVQNVEKEGATSEEIYKTAKEALQKAFAEILPQRSNNITALCPPLVTHSTTASFEEKRLYYCTRTPIVCLVVNEEPRPSAIWSLGYMGHNRTREQQEEQR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.476553 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0244900 | RBH | 0.656306 | 0.353039 | 0.672002 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g14020 | RBH | 0.336945 | 0.214794 | 0.156482 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0244900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008850 | RBH | 0.0 | 0.0 | 0.365327 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015320 | SBH | 0.049391 | 0.000000 | 0.703301 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008730 | RBH | 0.941579 | 1.310680 | 1.570465 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008590 | RBH | 0.068206 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008670 | RBH | 0.0 | 0.000000 | 1.821755 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0118000 | RBH | 0.9202865 | 2.491471 | 1.2569375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008700 | RBH | 0.047757 | 0.000000 | 0.152079 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0122200 | RBH | 0.7092525 | 2.105042 | 5.5999995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008760 | RBH | 0.048770 | 0.179925 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008850 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008760 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008620 | RBH | 0.000000 | 0.0 | 0.198279 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008770 | RBH | 0.048452 | 0.682172 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008800 | RBH | 0.000000 | 0.335152 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008680 | RBH | 0.355724 | 0.0 | 0.783347 |
