Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0023970 | OGI:01011440 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:28444259-28445605 | ||||||||
| Gene Symbol | DLN238, OsDLN238, - | ||||||||||
| DNA seq | ATGAACAACTCAGTTACTGAAGAAGAATTTGAATATTTGTGGAATGAAATGGTTGATTCCTATGAGGTTCAGCACATCAACTTTTTGAAGCACATGTGGTCAATTAGAAAGAGATTCATACCAGTATACTTCAAAACAAATTTTTGTCCATTCATAAAAAGCACAGCTCTAAGTGAAGGTACAAATTCAAGGTTTAAGAAAGATGTTGGTCCACAATACAGTATAACAACCTTTTTGATAGAATATGTCAGAGTAATGGACACTATTCAGAATTTGGAGCAGCTAGATGATCATAATTCAAGGACAAAAAGGCCAAGCAAACTTTGGTCTCATTACTACATTGAGTACCAAGCTGTCAAGCTGTACAATTCTAAAATATTCAAAAAGTTCCAAGTTGAACTTAAGAGGACAACAAGGTTACAATTGATTGAGGTCGAGAAATTGAAGACTTATGAAGTTTTTCTTGCATTGAATCAGAAAATAAAAGTAGTAAGAAGAAGGAAGTACCTTGTAATTGTTGACTCTGAAAAGGAGGAATACACTTGTATTTGCTCAAAATTTGAGAAAGATGGCCTTCTTTGCTCCCACATATTGAAAATTATGCTTCACCTCAACATTATGAAGATTCCAGAGAAATATATTATCGATCGGTGGAGAAAAAAGGATTACAAAGAAAAATCTGATTTTCAAGATAGAATTATACCTTTATCGGAGAGCTCAGTCCTCAGATTCAATATTCTGTCAAGGAAATGTGCTGAAATAGCCTCACAAGGATCAAAAAGTATTGATTCGTTCCAATTTGCAGTTGATCAGATTGACAAGTTAGAAAAAGAATTGATATCAATGAATTCAGAGCAAAGAACAAAGCAGCAAATGGAGATAGACAAAACAGATACAACAAATGGAGAAGACATTGAAGAAACAGAAGAAAACAGTGAAGAAATTTTGATAGATCCAGACATAGCAAAGTCAAAGGGAAGACCATCTCAAAGATACAAATCATTTAGAGAGGAATTATAGAGTAAAGAAGTTTATCATTGCAGTCATTGTCAACGAACAAATCACACTTTTCCAATATGCCCTCTAAAGCACATTGAATTTGATTTGCCAAGAAAGAAAATTAGAAAGACAAAAAACACAGCACAAAAGGTAAAAAGGTATTTATTTTAAGAATTCTCGTTTGATTTAAAATATTTAATTTGAATTTGATTTCAATTGCAGAATGCAGAGGAAGAACAAACTGATGGTTCAAAGAAGACAAATAAAGGGAAAAAACAAGAAGCAACAACACAAGTATTAGTGGAGCAAAAAGGGACTAAGAAAAGAAAGACAGATGGCTCAAGTTGA
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| CDS seq | ATGAACAACTCAGTTACTGAAGAAGAATTTGAATATTTGTGGAATGAAATGGTTGATTCCTATGAGGTTCAGCACATCAACTTTTTGAAGCACATGTGGTCAATTAGAAAGAGATTCATACCAGTATACTTCAAAACAAATTTTTGTCCATTCATAAAAAGCACAGCTCTAAGTGAAGGTACAAATTCAAGGTTTAAGAAAGATGTTGGTCCACAATACAGTATAACAACCTTTTTGATAGAATATGTCAGAGTAATGGACACTATTCAGAATTTGGAGCAGCTAGATGATCATAATTCAAGGACAAAAAGGCCAAGCAAACTTTGGTCTCATTACTACATTGAGTACCAAGCTGTCAAGCTGTACAATTCTAAAATATTCAAAAAGTTCCAAGTTGAACTTAAGAGGACAACAAGGTTACAATTGATTGAGGTCGAGAAATTGAAGACTTATGAAGTTTTTCTTGCATTGAATCAGAAAATAAAAGTAGTAAGAAGAAGGAAGTACCTTGTAATTGTTGACTCTGAAAAGGAGGAATACACTTGTATTTGCTCAAAATTTGAGAAAGATGGCCTTCTTTGCTCCCACATATTGAAAATTATGCTTCACCTCAACATTATGAAGATTCCAGAGAAATATATTATCGATCGGTGGAGAAAAAAGGATTACAAAGAAAAATCTGATTTTCAAGATAGAATTATACCTTTATCGGAGAGCTCAGTCCTCAGATTCAATATTCTGTCAAGGAAATGTGCTGAAATAGCCTCACAAGGATCAAAAAGTATTGATTCGTTCCAATTTGCAGTTGATCAGATTGACAAGTTAGAAAAAGAATTGATATCAATGAATTCAGAGCAAAGAACAAAGCAGCAAATGGAGATAGACAAAACAGATACAACAAATGGAGAAGACATTGAAGAAACAGAAGAAAACAGTGAAGAAATTTTGATAGATCCAGACATAGCAAATCATTGTCAACGAACAAATCACACTTTTCCAATATGCCCTCTAAAGCACATTGAATTTGATTTGCCAAGAAAGAAAATTAGAAAGACAAAAAACACAGCACAAAAGAATGCAGAGGAAGAACAAACTGATGGTTCAAAGAAGACAAATAAAGGGAAAAAACAAGAAGCAACAACACAAGTATTAGTGGAGCAAAAAGGGACTAAGAAAAGAAAGACAGATGGCTCAAGTTGA
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| Protein seq | MNNSVTEEEFEYLWNEMVDSYEVQHINFLKHMWSIRKRFIPVYFKTNFCPFIKSTALSEGTNSRFKKDVGPQYSITTFLIEYVRVMDTIQNLEQLDDHNSRTKRPSKLWSHYYIEYQAVKLYNSKIFKKFQVELKRTTRLQLIEVEKLKTYEVFLALNQKIKVVRRRKYLVIVDSEKEEYTCICSKFEKDGLLCSHILKIMLHLNIMKIPEKYIIDRWRKKDYKEKSDFQDRIIPLSESSVLRFNILSRKCAEIASQGSKSIDSFQFAVDQIDKLEKELISMNSEQRTKQQMEIDKTDTTNGEDIEETEENSEEILIDPDIANHCQRTNHTFPICPLKHIEFDLPRKKIRKTKNTAQKNAEEEQTDGSKKTNKGKKQEATTQVLVEQKGTKKRKTDGSS |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0023970 | OsARC_11g0023970.01 | Chr11 | 28444259 | 28445605 | + | NAM | ||
| CDS seq | ATGAACAACTCAGTTACTGAAGAAGAATTTGAATATTTGTGGAATGAAATGGTTGATTCCTATGAGGTTCAGCACATCAACTTTTTGAAGCACATGTGGTCAATTAGAAAGAGATTCATACCAGTATACTTCAAAACAAATTTTTGTCCATTCATAAAAAGCACAGCTCTAAGTGAAGGTACAAATTCAAGGTTTAAGAAAGATGTTGGTCCACAATACAGTATAACAACCTTTTTGATAGAATATGTCAGAGTAATGGACACTATTCAGAATTTGGAGCAGCTAGATGATCATAATTCAAGGACAAAAAGGCCAAGCAAACTTTGGTCTCATTACTACATTGAGTACCAAGCTGTCAAGCTGTACAATTCTAAAATATTCAAAAAGTTCCAAGTTGAACTTAAGAGGACAACAAGGTTACAATTGATTGAGGTCGAGAAATTGAAGACTTATGAAGTTTTTCTTGCATTGAATCAGAAAATAAAAGTAGTAAGAAGAAGGAAGTACCTTGTAATTGTTGACTCTGAAAAGGAGGAATACACTTGTATTTGCTCAAAATTTGAGAAAGATGGCCTTCTTTGCTCCCACATATTGAAAATTATGCTTCACCTCAACATTATGAAGATTCCAGAGAAATATATTATCGATCGGTGGAGAAAAAAGGATTACAAAGAAAAATCTGATTTTCAAGATAGAATTATACCTTTATCGGAGAGCTCAGTCCTCAGATTCAATATTCTGTCAAGGAAATGTGCTGAAATAGCCTCACAAGGATCAAAAAGTATTGATTCGTTCCAATTTGCAGTTGATCAGATTGACAAGTTAGAAAAAGAATTGATATCAATGAATTCAGAGCAAAGAACAAAGCAGCAAATGGAGATAGACAAAACAGATACAACAAATGGAGAAGACATTGAAGAAACAGAAGAAAACAGTGAAGAAATTTTGATAGATCCAGACATAGCAAATCATTGTCAACGAACAAATCACACTTTTCCAATATGCCCTCTAAAGCACATTGAATTTGATTTGCCAAGAAAGAAAATTAGAAAGACAAAAAACACAGCACAAAAGAATGCAGAGGAAGAACAAACTGATGGTTCAAAGAAGACAAATAAAGGGAAAAAACAAGAAGCAACAACACAAGTATTAGTGGAGCAAAAAGGGACTAAGAAAAGAAAGACAGATGGCTCAAGTTGA
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| Protein seq | MNNSVTEEEFEYLWNEMVDSYEVQHINFLKHMWSIRKRFIPVYFKTNFCPFIKSTALSEGTNSRFKKDVGPQYSITTFLIEYVRVMDTIQNLEQLDDHNSRTKRPSKLWSHYYIEYQAVKLYNSKIFKKFQVELKRTTRLQLIEVEKLKTYEVFLALNQKIKVVRRRKYLVIVDSEKEEYTCICSKFEKDGLLCSHILKIMLHLNIMKIPEKYIIDRWRKKDYKEKSDFQDRIIPLSESSVLRFNILSRKCAEIASQGSKSIDSFQFAVDQIDKLEKELISMNSEQRTKQQMEIDKTDTTNGEDIEETEENSEEILIDPDIANHCQRTNHTFPICPLKHIEFDLPRKKIRKTKNTAQKNAEEEQTDGSKKTNKGKKQEATTQVLVEQKGTKKRKTDGSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0681300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45530 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0681300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020790 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021680 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008090 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018760 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024700 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023480 | SBH | 0.0 | 0.268436 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0441400 | SBH | 2.1491325 | 1.8364675 | 4.8497865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0010310 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023760 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023900 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008060 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008140 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017300 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018390 | SBH | 0.299351 | 0.0 | 0.000000 |
