Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0486000 | OGI:11020450 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:17127130-17129422 | ||||||||
| Gene Symbol | rNBS10 | ||||||||||
| DNA seq | ATTGGCAATTCCCATCTCTATTTTACTCAATATATGACCTTTGGGCTAACTCAATAGATATAGTTCAATCCCCAAATTCCCTAATTTCCTCAAATTATGACATAGTCAACAGGTAGATCATCAATATGGACATCTAGATTCTCCCTTGCTGCCATTTTACATTGCATACTTAGCTCCTCGCTGCAACGGCGTACATGCAGCCGTGTCAGCGACGGTGGAAGGCCCATCTCCGGGAGCCTCGCGACGCCGGGGCAGTCTTCGACGTCTAACCACTCGAGGGAGGCCAGCCGTCGTAGGCCTGCAGGAAGCGAACGGAGATTCGGCAGGTGCCAGAAATCGAGGCGATGGAGGGAGGCCAGGAGCTGGAGAGCCCTCTCCTGTTCCTCCGTCAGGTCGATCATCGTCTCGCCACGCCTGCTATCCCATGACCAGAAGGATAGCCGTCGCAGAGACGCGAGCCGTCTGCAGAGAGGCACGGTGAGGACGGAGCCATCGCCGACCTGGAGGGTTTCCAGTCGGGACAAGATCTCCGCAGAGGCCAGTTGCTGATGTGACAGAAGCTCCAAGAATGCAGGTACTCCAGGTGAGTTGGATACCGCCAGGGACCTAAGGTTTGTTAAGGAGCCGAATCCCTCGATCGAAGCAAGTGAGCCGCAGTCTATAATCTTCAGCTCCCGCAGTGCCTTGGAGTATCCCAGCTGGAGAGATGTCAGCTCTGGACTCTGCCAAATGTACAGTGCTGTGATGGTTGGGAACAATTGCAGCAAACGGGACTGGTCCTTGTCTGTGAGGTTAGAGATATCGAGTTCTTCGAGTGACGGATGAGGCTGCAGTGGGATAATCTGTCCATGCTCCTGCAGTTTGAGATCCCACGCAGCAGAGAGCTCAGGACTCATATCAATCTCCAGGTTCTCAAGAGATGGTGGGAGTAATGCAACATCCACCTTATCACTCATGACCAACAACGGCATCAGCTTGGGGCAACGCTGAATTCGAAGACGCTCAAGAGAGGTGTATCCTAGGAGTACTCTCTCCCCTGCAACAAACTCCAGTTGGGCAGTTGGAGATGTCTAGCCACCTTAGAGAATGGATGATATTAGATGGAATTTCCAACAGCTGTTTATCATCTCTGGCTAAGGGCCTTGCTGCTGTAGCTTCCAAACTGCTCATGCCTTCCTTCTCCGCAGCTTGATGACTGAACGAAACAAATTTTAGTTGTGGGATCTCGTGTAATTCCAAACTATGGAGGGACTGCACATGAGAAAGCATTTCTGTTAAACAATGCCCTGATATGCCACATGCCTGAATGGAGATAAATTGGAGAGATGGGACGACAAAGCTGCTTGGAATGATCAAATTAGGGCAGTTCTTTATATGCAATTTCTCTAAAACTGTGCACTGATTGAGACCTTCAGTAGATAGAGAGACTAAATTTGGGCAATCCACTAGACAGAATGATCTTATGCGCGCAAAGTTATGGAATGATATGATCTTGTCATCAAGCATAACCAACTCTTCAGATTTGATTTTCAAATCATATGTTAACTCCATTGTTGGAAGAGTTGGAATCCCGCTGATGGAGAAGCGCCGCATCTGAGCAGAAAACGGGAGAGGATGTGAAACTACCAAACGAGGACAATCATGAATTGTGAGATCATGAAGACCAGATAGCGACTCATTTCGATCTCCTAAGGAAGTGGAAATTTGCAGGGATGGAGAAGTTAGCCCACTGCAATATTCCAGGCTTGCCATCTTAATCAAAACCAACTTCTCCAGTGGAAGGACTAACAACTCTTTGACTGCATGCAGGTGTACTAACTCCAACTCCTTCAGTGATTGCATCTCTCTCAGAGGAAGTATTTCCCATTTGCTGCCATATCATTTACAGAGAATCTAAGTTATTAAAGAATTGAAATAACAACTGTTCAGGAAAAGGTAAAGCAACGAAACAACTGCTATACCTTATATGAGGACAACACCCAATGGTGAGTTTGTTTAGAGATGGAAACCATGACTTCTGCTCGGTTCTGAAAGAAGAGAAGCTCTGGAAAGGAGTGAACTCATTCAATTGAGGGCAGTCCTTGATCTTCAATACTCTGAGACGGGAAGTCAATTCTGTCCCATAAGTACCAAAGCACTTCTCCAATTTCGGCAACTCAATTAAAATCAACTTCTCCAAAGAGGGAATTGAGAGTTCCACTAGATTCCACATCTTAACCAATTTCAATTCCCTAAGCACTGGAAGCATTTCAAGAGATCCAAGAATTCGCCACTCCCTGCAATTGACAAGATG
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| CDS seq | ATGCTTCCAGTGCTTAGGGAATTGAAATTGGTTAAGATGTGGAATCTAGTGGAACTCTCAATTCCCTCTTTGGAGAAGTTGATTTTAATTGAGTTGCCGAAATTGGAGAAGTGCTTTGGTACTTATGGGACAGAATTGACTTCCCGTCTCAGAGTATTGAAGATCAAGGACTGCCCTCAATTGAATGAGTTCACTCCTTTCCAGAGCTTCTCTTCTTTCAGAACCGAGCAGAAGTCATGGTTTCCATCTCTAAACAAACTCACCATTGGGTGTTGTCCTCATATAAGCAAATGGGAAATACTTCCTCTGAGAGAGATGCAATCACTGAAGGAGTTGGAGTTAGTACACCTGCATGCAGTCAAAGAGTTGTTAGTCCTTCCACTGGAGAAGTTGGTTTTGATTAAGATGGCAAGCCTGGAATATTGCAGTGGGCTAACTTCTCCATCCCTGCAAATTTCCACTTCCTTAGGAGATCGAAATGAGTCGCTATCTGGTCTTCATGATCTCACAATTCATGATTGTCCTCGTTTGGTAGTTTCACATCCTCTCCCGTTTTCTGCTCAGATGCGGCGCTTCTCCATCAGCGGGATTCCAACTCTTCCAACAATGGAGTTAACATATGATTTGAAAATCAAATCTGAAGAGTTGGTTATGCTTGATGACAAGATCATATCATTCCATAACTTTGCGCGCATAAGATCATTCTGTCTAGTGGATTGCCCAAATTTAGTCTCTCTATCTACTGAAGGTCTCAATCAGTGCACAGTTTTAGAGAAATTGCATATAAAGAACTGCCCTAATTTGATCATTCCAAGCAGCTTTGTCGTCCCATCTCTCCAATTTATCTCCATTCAGGCATGTGGCATATCAGGGCATTGTTTAACAGAAATGCTTTCTCATGTGCAGTCCCTCCATAGTTTGGAATTACACGAGATCCCACAACTAAAATTTGTTTCGTTCAGTCATCAAGCTGCGGAGAAGGAAGGCATGAGCAGTTTGGAAGCTACAGCAGCAAGGCCCTTAGCCAGAGATGATAAACAGCTGTTGGAAATTCCATCTAATATCATCCATTCTCTAAGGTGGCTAGACATCTCCAACTGCCCAACTGGAGTTTGTTGCAGGGGAGAGAGTACTCCTAGGATACACCTCTCTTGA
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| Protein seq | MLPVLRELKLVKMWNLVELSIPSLEKLILIELPKLEKCFGTYGTELTSRLRVLKIKDCPQLNEFTPFQSFSSFRTEQKSWFPSLNKLTIGCCPHISKWEILPLREMQSLKELELVHLHAVKELLVLPLEKLVLIKMASLEYCSGLTSPSLQISTSLGDRNESLSGLHDLTIHDCPRLVVSHPLPFSAQMRRFSISGIPTLPTMELTYDLKIKSEELVMLDDKIISFHNFARIRSFCLVDCPNLVSLSTEGLNQCTVLEKLHIKNCPNLIIPSSFVVPSLQFISIQACGISGHCLTEMLSHVQSLHSLELHEIPQLKFVSFSHQAAEKEGMSSLEATAARPLARDDKQLLEIPSNIIHSLRWLDISNCPTGVCCRGESTPRIHLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0486000 | OsNip_11t0486000-01 | Chr11 | 17127130 | 17129422 | - | RAP2018-11-26 | ||
| CDS seq | ATGCTTCCAGTGCTTAGGGAATTGAAATTGGTTAAGATGTGGAATCTAGTGGAACTCTCAATTCCCTCTTTGGAGAAGTTGATTTTAATTGAGTTGCCGAAATTGGAGAAGTGCTTTGGTACTTATGGGACAGAATTGACTTCCCGTCTCAGAGTATTGAAGATCAAGGACTGCCCTCAATTGAATGAGTTCACTCCTTTCCAGAGCTTCTCTTCTTTCAGAACCGAGCAGAAGTCATGGTTTCCATCTCTAAACAAACTCACCATTGGGTGTTGTCCTCATATAAGCAAATGGGAAATACTTCCTCTGAGAGAGATGCAATCACTGAAGGAGTTGGAGTTAGTACACCTGCATGCAGTCAAAGAGTTGTTAGTCCTTCCACTGGAGAAGTTGGTTTTGATTAAGATGGCAAGCCTGGAATATTGCAGTGGGCTAACTTCTCCATCCCTGCAAATTTCCACTTCCTTAGGAGATCGAAATGAGTCGCTATCTGGTCTTCATGATCTCACAATTCATGATTGTCCTCGTTTGGTAGTTTCACATCCTCTCCCGTTTTCTGCTCAGATGCGGCGCTTCTCCATCAGCGGGATTCCAACTCTTCCAACAATGGAGTTAACATATGATTTGAAAATCAAATCTGAAGAGTTGGTTATGCTTGATGACAAGATCATATCATTCCATAACTTTGCGCGCATAAGATCATTCTGTCTAGTGGATTGCCCAAATTTAGTCTCTCTATCTACTGAAGGTCTCAATCAGTGCACAGTTTTAGAGAAATTGCATATAAAGAACTGCCCTAATTTGATCATTCCAAGCAGCTTTGTCGTCCCATCTCTCCAATTTATCTCCATTCAGGCATGTGGCATATCAGGGCATTGTTTAACAGAAATGCTTTCTCATGTGCAGTCCCTCCATAGTTTGGAATTACACGAGATCCCACAACTAAAATTTGTTTCGTTCAGTCATCAAGCTGCGGAGAAGGAAGGCATGAGCAGTTTGGAAGCTACAGCAGCAAGGCCCTTAGCCAGAGATGATAAACAGCTGTTGGAAATTCCATCTAATATCATCCATTCTCTAAGGTGGCTAGACATCTCCAACTGCCCAACTGGAGTTTGTTGCAGGGGAGAGAGTACTCCTAGGATACACCTCTCTTGA
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| Protein seq | MLPVLRELKLVKMWNLVELSIPSLEKLILIELPKLEKCFGTYGTELTSRLRVLKIKDCPQLNEFTPFQSFSSFRTEQKSWFPSLNKLTIGCCPHISKWEILPLREMQSLKELELVHLHAVKELLVLPLEKLVLIKMASLEYCSGLTSPSLQISTSLGDRNESLSGLHDLTIHDCPRLVVSHPLPFSAQMRRFSISGIPTLPTMELTYDLKIKSEELVMLDDKIISFHNFARIRSFCLVDCPNLVSLSTEGLNQCTVLEKLHIKNCPNLIIPSSFVVPSLQFISIQACGISGHCLTEMLSHVQSLHSLELHEIPQLKFVSFSHQAAEKEGMSSLEATAARPLARDDKQLLEIPSNIIHSLRWLDISNCPTGVCCRGESTPRIHLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.416294 | 0.397210 | 0.270988 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29520 | SBH | 0.257470 | 0.329744 | 0.176078 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0486000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014230 | SBH | 0.123536 | 2.510983 | 2.718984 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012120 | SBH | 0.051170 | 0.500445 | 0.643209 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014150 | SBH | 0.407894 | 3.483453 | 3.024886 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013960 | SBH | 0.013934 | 0.011487 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007820 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012170 | SBH | 0.058506 | 0.097177 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012280 | SBH | 0.521379 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011930 | SBH | 0.554548 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011780 | SBH | 0.349432 | 0.0 | 0.181410 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014140 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013950 | SBH | 0.029568 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014160 | RBH | 0.0 | 0.000000 | 1.290743 |
