Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0012170 | OGI:11039500 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:14672994-14678630 | ||||||||
| Gene Symbol | rNBS10 | ||||||||||
| DNA seq | tcagagttcagagatgactagtccagttctgaaaacaactgtagtggcgatagtaaataggactctgaagaaattaaacgatatattattatgtgcagagacaaataagttctgcagaaagggcatgggctcccagtcccactctcggagtgcagacttccccattatcacctaaccaaaatgctcaaggggaaaagagaagggcaatggtgatcgatttgtctgttaaaaaattcctagctattcacagccatgaagatcggtaatgcagaaccagaatagagcaatactaccacagtaaaacagtgcagctgccagctgcttacttggttaggaccatgagctcattgcttcccccagttcttggttgcagccatagtgatcgctgccatgctcccagcttggtgatcctccaaaacacacaaaaataaatcccccatcggcttgctaaaaccttaaacaaaatcaaatcagaataactatatagttaatatcgtaattccctcatttacaagaataaatagcagctaaatagttttttgttttattttactgatgtgctgactactgaatgaacatatactaaacagtggttgtttccaagagaaagatcaattattctatataatatagtagtttgcaaacttgcagttgcacctatgttctttccacagtcagaacaaggacactgcaggtatcgcaaataaatatttatttgttgttatgaaaagatgatttaatacaaaataatggcaaacgcaattgaaacaaatcttctgcaaagaagtgtagccacaccttgtgttgtcttgacttcatgtagacagtagttattgatccagctggtgatgaagcagcctaactaatctgctgaagtcatggcatcttcatttcaagctccatccagttacagatatctgaggagactactatattaaacagaatggttgagtgcacacaaggtttattgaattcatctgcatgtgaaccttcatcagtaatatcttctatcctcctcttgtgacaaaaaataatcaattaagcgaagcataggcatgccttttataaattgagaaactgaaggttcattcataactagtagttctcatttttctcatctcttccgtttcctacaaatgaaccaggttggcaaaaaataaactgaggttagcaataccagttattcaacaaaaataaatactaatcaattgatacagttaaaacaattatacagagagcacccattccacgagtgtctaaaacacaaaataaaagtgctaatctttttaaaactgtaaaataatacctaaaatagagacgtagcagcttgcatataactatgaatttgcttgcatttctatcaacataaacacatctaacattttttgtcttcttgcactgctccttcagttctgcactgcaactgctcacgtagagctcgtgtaaggaagctgggaggccattttctggcaatgatttaattcctggacaagccttgattgacaactgcttcagggaagaaaggcaatgcaacattttaggcagtgataggagattagggcaataacaaaaatcaagtacatggagagatgtgaggtgacaaagtgctttttcttcttcttctgtgaaggatctcacattctttgcctgcaaaaaatgaagtgatgagaaaccactgtatattgagcaagtttatctgttccaacgaaattattgactaattgtgttaatagttaccatgAaaaacactaaatgtcgaagagatggaagcttcttgcaaacttctgtgttaaataacacagtggtatcaatttcaagcttgtctagatataaagagaaacctggcctgtccactgaggaagggccccatgttttagccaaactagggcattgaaaaatccgtagatgcttaagtttggggagggaatgcaaaccctctagagcagacagcccaacacatttctcaatgatcaaagtttctaaagatgtgcaagaatgaagaacaagggatgataactctggactgttagatattgcaaatatggataacgaggtgaggttcgagagcaagaaaggtagcaactcattatgcacatgagtaaccataaggtcatgtagtaatggtggcaggagggaagagtttttgttgggtcttttgttttctgttatcatgggggagagaagttgtgtgcatcctgtgatgtgtagggtccgaagtgaggtgaatccatggaagccttctttccagagtagaaccagatctggaaagtcatctatgctcaaatactgaagttgaattaagagatgagatggtatttgcaacatgccatcagttgtcaattggaggtaatcagatgttgaagagctgtcactcccattaatcacatcaccaagcaacaaggatgttatctttgggcactttccaattgtcaagtaatgaaggaagggcaactgtaagatcaagtgagataactgcttccctgtaatgctacatgctcggattacaagcttgttgagcaatgacatgaaagaaaaattacccccatcttggttatatggatataaagtcaaagaaagccttgggcagtccacaattaccagcatctccaaagagacaagtttgctgagtgttttccatggcaaatatgtaagatcgaggcaactctcaatcgttaatttctcaagaagacataggttgccctcaatcaacattaatatttgatccaatttacttgggctagcgcatcccttgatatacaatgctcgcacaaacaatcggatgtaaggaaatgatcctactccctcaatagatattgtggacaaatattttgtctgaccaaattgtggtaaattcattagttgaggacagttatagatagtagcatgatggagacggccaaatgtgtgagagccttcagtttcaaaagagcatggtgacaatcctaatgtccttagttcagggcaatcccttatcacaagttcttctaggcatggaaatataatatgtttttcagaaccagtccagtcgtcactggatacagttggtacaacccttgaagaaggcaactgaatcaaatgcagtgttctaaggagtggaaattgcccaagcggtggaaggacctcccattttgtgcaactatctagacagatagtctctaagctgatgagtggattaatggagctcaaccatgttgggcaagaaatacctccatagccatttatacttagacacttaagcccagagtgtggttgaaggctctcaagcacctcttcctcgataacagaacttacctcaaatcggttgctacaccatgatagcaacaaatcctttaggtatattttatcccttaatccagcattcttagactcctctttgctacatatgttctctagattgtaaattgctaatgatcctcccaattcccttaatccattcaactgtccaatctgaaagtcagtagtctttccaactcggaattcctttaactcctggagaaactttaatctcccaactccagcaatcagtgcgtgcaattcaccacgggcaacaaaatgcctcaagttgacaagatcattcatggctcttggtaaagtggagaggtgtacccagtactcgacatcaaggacctgtagatgataaagctgacatataacctctggcaagggtccaccaggaccactggatattagctcaaggtagcgaagatggatcaatttgctgaagttagagagtaaatagtctatgctataagtgagcgtgggtagcctcagaacacgaagatattgcacttctttaaaaatatgggaaaaagtttcagaaaagtctgcgtcatactttccaaatagcattaatgtactcaagttcctggtttgcactgtttcaccaacataagtaagcttcctctggaagtcatcttttgaataaaacttctgggaatatacatcccacttataagcataccttgtattaatagataaatgttgaatggttgactgagctattccacttgaattaaaaccatcaatcatatggcattcatctgctgaaacaatatgtgccaggtcatgaatcaggtcatgcatagaatagtatgtgcttctttgaaaaaatccacaatccactaaatcattcaaatattgatggccaatgtcctccattttcttattgttcgaagaaacaaaaccttgtgatatccaaacacggaccaaatctaagccatcaaacctgtgacccttaggaaacaatgcacagtaagaaaaacacctttgtagatgaaaaggcaagtgtatataactaagcatcaatgctggaatgatatcatcaggtcctctctgcagtttccattcgtcactttgcaatatgctcatccaatgcccaccatcaaggtctctattcaaaagggcaccaacactttttgcagctaagggataacccttcaacttgttagctatgcacttcccaataacctgcaaacttggatgcccttcatatttttcatcaccaaatgcacatgccttgaacagaagccaaaagtcaccatcttccaaaccatccaaatggataggatccattgtagcaatcatctttactacagagtgatttcttgttgtaaccaagattgcattgcccctcaatgaactacatctcagaggtgctaatagcttgttccaacggcttttatcattgtcttcccacatgtcatccaaaacaaggagtagccgctcggacttaagatcctcctcaagaatctcttggagcttattcaggttagtgataccaccatgcttattgacaccattggacacacaatcgagtagctcacgagtaagcctaacttcatcgaagtcaacagacactgaaatccatattcgcttgctgaattgagcttgcactcttgtgtcactgtagactagctgtgccagtgtagttttaccaacaccaccattccccacaattggaaggactgccaaatcagcaccacatgtctctgagctaatcaacatcaccacaatgcgatccttcacggtgtccctcccaaacacctttggctcagtggagtaagatgttgttggcctccgttgaattatacgatcatcttggcctcccccagcggcactgacgtccagtttctccatcttgattgcctcacgaacatcatctccggcttcacacatccgctctaggatgtctttaattctaccggtggtatcgccatctccactatggcgcaccctcttggcaacgcgattattgggctccactagttggactgcaaacaatgaggagcaagagttggaggaggtactaggctcgtccggatgtagccgtcggtggatttggtggtacagcatttcgtcgagcaggttgtcagcatcggtggcgaggctctgcaggctacggagagagcgaaggagggcctcgctgcgcctgcgtgccatgggcgcgtgctcttgggcctcggagaggagggcgtggaggctctggaggcgggagccgaggcggcggacgtcgccgccgtgggcgcggcccgggtcccccccggcgcgcgccgcggcccaggcggcgtcgatgccgtcgccgacgagcttctccaggacgacctgaaccagccaggacgccgcccccaccacatccat
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| CDS seq | atggatgtggtgggggcggcgtcctggctggttcaggtcgtcctggagaagctcgtcggcgacggcatcgacgccgcctgggccgcggcgcgcgccgggggggacccgggccgcgcccacggcggcgacgtccgccgcctcggctcccgcctccagagcctccacgccctcctctccgaggcccaagagcacgcgcccatggcacgcaggcgcagcgaggccctccttcgctctctccgtagcctgcagagcctcgccaccgatgctgacaacctgctcgacgaaatgctgtaccaccaaatccaccgacggctacatccggacgagcctagtacctcctccaactcttgctcctcattgtttgcagtccaactagtggagcccaataatcgcgttgccaagagggtgcgccatagtggagatggcgataccaccggtagaattaaagacatcctagagcggatgtgtgaagccggagatgatgttcgtgaggcaatcaagatggagaaactggacgtcagtgccgctgggggaggccaagatgatcgtataattcaacggaggccaacaacatcttactccactgagccaaaggtgtttgggagggacaccgtgaaggatcgcattgtggtgatgttgattagctcagagacatgtggtgctgatttggcagtccttccaattgtggggaatggtggtgttggtaaaactacactggcacagctagtctacagtgacacaagagtgcaagctcaattcagcaagcgaatatggatttcagtgtctgttgacttcgatgaagttaggcttactcgtgagctactcgattgtgtgtccaatggtgtcaataagcatggtggtatcactaacctgaataagctccaagagattcttgaggaggatcttaagtccgagcggctactccttgttttggatgacatgtgggaagacaatgataaaagccgttggaacaagctattagcacctctgagatgtagttcattgaggggcaatgcaatcttggttacaacaagaaatcactctgtagtaaagatgattgctacaatggatcctatccatttggatggtttggaagatggtgacttttggcttctgttcaaggcatgtgcatttggtgatgaaaaatatgaagggcatccaagtttgcaggttattgggaagtgcatagctaacaagttgaagggttatcccttagctgcaaaaagtgttggtgcccttttgaatagagaccttgatggtgggcattggatgagcatattgcaaagtgacgaatggaaactgcagagaggacctgatgatatcattccagcattgatgcttagttatatacacttgccttttcatctacaaaggtgtttttcttactgtgcattgtttcctaagggtcacaggtttgatggcttagatttggtccgtgtttggatatcacaaggttttgtttcttcgaacaataagaaaatggaggacattggccatcaatatttgaatgatttagtggattgtggattttttcaaagaagcacatactattctatgcatgacctgattcatgacctggcacatattgtttcagcagatgaatgccatatgattgatggttttaattcaagtggaatagctcagtcaaccattcaacatttatctattaatacaaggtatgcttataagtgggatgtatattcccagaagttttattcaaaagatgacttccagaggaagcttacttatgttggtgaaacagtgcaaaccaggaacttgagtacattaatgctatttggaaagtatgacgcagacttttctgaaactttttcccatatttttaaagaagtgcaatatcttcgtgttctgaggctacccacgctcacttatagcatagactatttactctctaacttcagcaaattgatccatcttcgctaccttgagctaatatccagtggtcctggtggacccttgccagaggttatatgtcagctttatcatctacaggtccttgatgtcgagtactgggtacacctctccactttaccaagagccatgaatgatcttgtcaacttgaggcattttgttgcccgtggtgaattgcacgcactgattgctggagttgggagattaaagtttctccaggagttaaaggaattccgagttggaaagactactgactttcagattggacagttgaatggattaagggaattgggaggatcattagcaatttacaatctagagaacatatgtagcaaagaggagtctaagaatgctggattaagggataaaatatacctaaaggatttgttgctatcatggtgtagcaaccgatttgaggtaagttctgttatcgaggaagaggtgcttgagagccttcaaccacactctgggcttaagtgtctaagtataaatggctatggaggtatttcttgcccaacatggttgagctccattaatccactcatcagcttagagactatctgtctagatagttgcacaaaatgggaggtccttccaccgcttgggcaatttccactccttagaacactgcatttgattcagttgccttcttcaagggttgtaccaactgtatccagtgacgactggactggttctgaaaaacatattatatttccatgcctagaagaacttgtgataagggattgccctgaactaaggacattaggattgtcaccatgctcttttgaaactgaaggctctcacacatttggccgtctccatcatgctactatctataactgtcctcaactaatgaatttaccacaatttggtcagacaaaatatttgtccacaatatctattgagggagtaggatcatttccttacatccgattgtttgtgcgagcattgtatatcaagggatgcgctagcccaagtaaattggatcaaatattaatgttgattgagggcaacctatgtcttcttgagaaattaacgattgagagttgcctcgatcttacatatttgccatggaaaacactcagcaaacttgtctctttggagatgctggtaattgtggactgcccaaggctttctttgactttatatccatataaccaagatgggggtaatttttctttcatgtcattgctcaacaagcttgtaatccgagcatgtagcattacagggaagcagttatctcacttgatcttacagttgcccttccttcattacttgacaattggaaagtgcccaaagataacatccttgttgcttggtgatgtgattaatgggagtgacagctcttcaacatctgattacctccaattgacaactgatggcatgttgcaaataccatctcatctcttaattcaacttcagtatttgagcatagatgactttccagatctggttctactctggaaagaaggcttccatggattcacctcacttcggaccctacacatcacaggatgcacacaacttctctcccccatgataacagaaaacaaaagacccaacaaaaactcttccctcctgccaccattactacatgaccttatggttactcatgtgcataatgagttgctacctttcttgctctcgaacctcacctcgttatccatatttgcaatatctaacagtccagagttatcatcccttgttcttcattcttgcacatctttagaaactttgatcattgagaaatgtgttgggctgtctgctctagagggtttgcattccctccccaaacttaagcatctacggatttttcaatgccctagtttggctaaaacatggggcccttcctcagtggacaggccaggtttctctttatatctagacaagcttgaaattgataccactgtgttatttaacacagaagtttgcaagaagcttccatctcttcgacatttagtgttttTcatgttgtcaatcaaggcttgtccaggaattaaatcattgccagaaaatggcctcccagcttccttacacgagctctacgtgagcagttgcagtgcagaactgaaggagcagtgcaagaagacaaaaaatgttagatgtgtttatgttgatagaaatgcaagcaaattcatagttatatgcaagctgctacgtctctattttaggatcaccaagctgggagcatggcagcgatcactatggctgcaaccaagaactgggggaagcaatgagctcatggtcctaaccaaagtcctatttactatcgccactacagttgttttcagaactggactagtcatctctgaactctga
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| Protein seq | MDVVGAASWLVQVVLEKLVGDGIDAAWAAARAGGDPGRAHGGDVRRLGSRLQSLHALLSEAQEHAPMARRRSEALLRSLRSLQSLATDADNLLDEMLYHQIHRRLHPDEPSTSSNSCSSLFAVQLVEPNNRVAKRVRHSGDGDTTGRIKDILERMCEAGDDVREAIKMEKLDVSAAGGGQDDRIIQRRPTTSYSTEPKVFGRDTVKDRIVVMLISSETCGADLAVLPIVGNGGVGKTTLAQLVYSDTRVQAQFSKRIWISVSVDFDEVRLTRELLDCVSNGVNKHGGITNLNKLQEILEEDLKSERLLLVLDDMWEDNDKSRWNKLLAPLRCSSLRGNAILVTTRNHSVVKMIATMDPIHLDGLEDGDFWLLFKACAFGDEKYEGHPSLQVIGKCIANKLKGYPLAAKSVGALLNRDLDGGHWMSILQSDEWKLQRGPDDIIPALMLSYIHLPFHLQRCFSYCALFPKGHRFDGLDLVRVWISQGFVSSNNKKMEDIGHQYLNDLVDCGFFQRSTYYSMHDLIHDLAHIVSADECHMIDGFNSSGIAQSTIQHLSINTRYAYKWDVYSQKFYSKDDFQRKLTYVGETVQTRNLSTLMLFGKYDADFSETFSHIFKEVQYLRVLRLPTLTYSIDYLLSNFSKLIHLRYLELISSGPGGPLPEVICQLYHLQVLDVEYWVHLSTLPRAMNDLVNLRHFVARGELHALIAGVGRLKFLQELKEFRVGKTTDFQIGQLNGLRELGGSLAIYNLENICSKEESKNAGLRDKIYLKDLLLSWCSNRFEVSSVIEEEVLESLQPHSGLKCLSINGYGGISCPTWLSSINPLISLETICLDSCTKWEVLPPLGQFPLLRTLHLIQLPSSRVVPTVSSDDWTGSEKHIIFPCLEELVIRDCPELRTLGLSPCSFETEGSHTFGRLHHATIYNCPQLMNLPQFGQTKYLSTISIEGVGSFPYIRLFVRALYIKGCASPSKLDQILMLIEGNLCLLEKLTIESCLDLTYLPWKTLSKLVSLEMLVIVDCPRLSLTLYPYNQDGGNFSFMSLLNKLVIRACSITGKQLSHLILQLPFLHYLTIGKCPKITSLLLGDVINGSDSSSTSDYLQLTTDGMLQIPSHLLIQLQYLSIDDFPDLVLLWKEGFHGFTSLRTLHITGCTQLLSPMITENKRPNKNSSLLPPLLHDLMVTHVHNELLPFLLSNLTSLSIFAISNSPELSSLVLHSCTSLETLIIEKCVGLSALEGLHSLPKLKHLRIFQCPSLAKTWGPSSVDRPGFSLYLDKLEIDTTVLFNTEVCKKLPSLRHLVFFMLSIKACPGIKSLPENGLPASLHELYVSSCSAELKEQCKKTKNVRCVYVDRNASKFIVICKLLRLYFRITKLGAWQRSLWLQPRTGGSNELMVLTKVLFTIATTVVFRTGLVISEL |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0012170 | OsLima_11g0012170.01 | Chr11 | 14672994 | 14678630 | - | NAM | ||
| CDS seq | atggatgtggtgggggcggcgtcctggctggttcaggtcgtcctggagaagctcgtcggcgacggcatcgacgccgcctgggccgcggcgcgcgccgggggggacccgggccgcgcccacggcggcgacgtccgccgcctcggctcccgcctccagagcctccacgccctcctctccgaggcccaagagcacgcgcccatggcacgcaggcgcagcgaggccctccttcgctctctccgtagcctgcagagcctcgccaccgatgctgacaacctgctcgacgaaatgctgtaccaccaaatccaccgacggctacatccggacgagcctagtacctcctccaactcttgctcctcattgtttgcagtccaactagtggagcccaataatcgcgttgccaagagggtgcgccatagtggagatggcgataccaccggtagaattaaagacatcctagagcggatgtgtgaagccggagatgatgttcgtgaggcaatcaagatggagaaactggacgtcagtgccgctgggggaggccaagatgatcgtataattcaacggaggccaacaacatcttactccactgagccaaaggtgtttgggagggacaccgtgaaggatcgcattgtggtgatgttgattagctcagagacatgtggtgctgatttggcagtccttccaattgtggggaatggtggtgttggtaaaactacactggcacagctagtctacagtgacacaagagtgcaagctcaattcagcaagcgaatatggatttcagtgtctgttgacttcgatgaagttaggcttactcgtgagctactcgattgtgtgtccaatggtgtcaataagcatggtggtatcactaacctgaataagctccaagagattcttgaggaggatcttaagtccgagcggctactccttgttttggatgacatgtgggaagacaatgataaaagccgttggaacaagctattagcacctctgagatgtagttcattgaggggcaatgcaatcttggttacaacaagaaatcactctgtagtaaagatgattgctacaatggatcctatccatttggatggtttggaagatggtgacttttggcttctgttcaaggcatgtgcatttggtgatgaaaaatatgaagggcatccaagtttgcaggttattgggaagtgcatagctaacaagttgaagggttatcccttagctgcaaaaagtgttggtgcccttttgaatagagaccttgatggtgggcattggatgagcatattgcaaagtgacgaatggaaactgcagagaggacctgatgatatcattccagcattgatgcttagttatatacacttgccttttcatctacaaaggtgtttttcttactgtgcattgtttcctaagggtcacaggtttgatggcttagatttggtccgtgtttggatatcacaaggttttgtttcttcgaacaataagaaaatggaggacattggccatcaatatttgaatgatttagtggattgtggattttttcaaagaagcacatactattctatgcatgacctgattcatgacctggcacatattgtttcagcagatgaatgccatatgattgatggttttaattcaagtggaatagctcagtcaaccattcaacatttatctattaatacaaggtatgcttataagtgggatgtatattcccagaagttttattcaaaagatgacttccagaggaagcttacttatgttggtgaaacagtgcaaaccaggaacttgagtacattaatgctatttggaaagtatgacgcagacttttctgaaactttttcccatatttttaaagaagtgcaatatcttcgtgttctgaggctacccacgctcacttatagcatagactatttactctctaacttcagcaaattgatccatcttcgctaccttgagctaatatccagtggtcctggtggacccttgccagaggttatatgtcagctttatcatctacaggtccttgatgtcgagtactgggtacacctctccactttaccaagagccatgaatgatcttgtcaacttgaggcattttgttgcccgtggtgaattgcacgcactgattgctggagttgggagattaaagtttctccaggagttaaaggaattccgagttggaaagactactgactttcagattggacagttgaatggattaagggaattgggaggatcattagcaatttacaatctagagaacatatgtagcaaagaggagtctaagaatgctggattaagggataaaatatacctaaaggatttgttgctatcatggtgtagcaaccgatttgaggtaagttctgttatcgaggaagaggtgcttgagagccttcaaccacactctgggcttaagtgtctaagtataaatggctatggaggtatttcttgcccaacatggttgagctccattaatccactcatcagcttagagactatctgtctagatagttgcacaaaatgggaggtccttccaccgcttgggcaatttccactccttagaacactgcatttgattcagttgccttcttcaagggttgtaccaactgtatccagtgacgactggactggttctgaaaaacatattatatttccatgcctagaagaacttgtgataagggattgccctgaactaaggacattaggattgtcaccatgctcttttgaaactgaaggctctcacacatttggccgtctccatcatgctactatctataactgtcctcaactaatgaatttaccacaatttggtcagacaaaatatttgtccacaatatctattgagggagtaggatcatttccttacatccgattgtttgtgcgagcattgtatatcaagggatgcgctagcccaagtaaattggatcaaatattaatgttgattgagggcaacctatgtcttcttgagaaattaacgattgagagttgcctcgatcttacatatttgccatggaaaacactcagcaaacttgtctctttggagatgctggtaattgtggactgcccaaggctttctttgactttatatccatataaccaagatgggggtaatttttctttcatgtcattgctcaacaagcttgtaatccgagcatgtagcattacagggaagcagttatctcacttgatcttacagttgcccttccttcattacttgacaattggaaagtgcccaaagataacatccttgttgcttggtgatgtgattaatgggagtgacagctcttcaacatctgattacctccaattgacaactgatggcatgttgcaaataccatctcatctcttaattcaacttcagtatttgagcatagatgactttccagatctggttctactctggaaagaaggcttccatggattcacctcacttcggaccctacacatcacaggatgcacacaacttctctcccccatgataacagaaaacaaaagacccaacaaaaactcttccctcctgccaccattactacatgaccttatggttactcatgtgcataatgagttgctacctttcttgctctcgaacctcacctcgttatccatatttgcaatatctaacagtccagagttatcatcccttgttcttcattcttgcacatctttagaaactttgatcattgagaaatgtgttgggctgtctgctctagagggtttgcattccctccccaaacttaagcatctacggatttttcaatgccctagtttggctaaaacatggggcccttcctcagtggacaggccaggtttctctttatatctagacaagcttgaaattgataccactgtgttatttaacacagaagtttgcaagaagcttccatctcttcgacatttagtgttttTcatgttgtcaatcaaggcttgtccaggaattaaatcattgccagaaaatggcctcccagcttccttacacgagctctacgtgagcagttgcagtgcagaactgaaggagcagtgcaagaagacaaaaaatgttagatgtgtttatgttgatagaaatgcaagcaaattcatagttatatgcaagctgctacgtctctattttaggatcaccaagctgggagcatggcagcgatcactatggctgcaaccaagaactgggggaagcaatgagctcatggtcctaaccaaagtcctatttactatcgccactacagttgttttcagaactggactagtcatctctgaactctga
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| Protein seq | MDVVGAASWLVQVVLEKLVGDGIDAAWAAARAGGDPGRAHGGDVRRLGSRLQSLHALLSEAQEHAPMARRRSEALLRSLRSLQSLATDADNLLDEMLYHQIHRRLHPDEPSTSSNSCSSLFAVQLVEPNNRVAKRVRHSGDGDTTGRIKDILERMCEAGDDVREAIKMEKLDVSAAGGGQDDRIIQRRPTTSYSTEPKVFGRDTVKDRIVVMLISSETCGADLAVLPIVGNGGVGKTTLAQLVYSDTRVQAQFSKRIWISVSVDFDEVRLTRELLDCVSNGVNKHGGITNLNKLQEILEEDLKSERLLLVLDDMWEDNDKSRWNKLLAPLRCSSLRGNAILVTTRNHSVVKMIATMDPIHLDGLEDGDFWLLFKACAFGDEKYEGHPSLQVIGKCIANKLKGYPLAAKSVGALLNRDLDGGHWMSILQSDEWKLQRGPDDIIPALMLSYIHLPFHLQRCFSYCALFPKGHRFDGLDLVRVWISQGFVSSNNKKMEDIGHQYLNDLVDCGFFQRSTYYSMHDLIHDLAHIVSADECHMIDGFNSSGIAQSTIQHLSINTRYAYKWDVYSQKFYSKDDFQRKLTYVGETVQTRNLSTLMLFGKYDADFSETFSHIFKEVQYLRVLRLPTLTYSIDYLLSNFSKLIHLRYLELISSGPGGPLPEVICQLYHLQVLDVEYWVHLSTLPRAMNDLVNLRHFVARGELHALIAGVGRLKFLQELKEFRVGKTTDFQIGQLNGLRELGGSLAIYNLENICSKEESKNAGLRDKIYLKDLLLSWCSNRFEVSSVIEEEVLESLQPHSGLKCLSINGYGGISCPTWLSSINPLISLETICLDSCTKWEVLPPLGQFPLLRTLHLIQLPSSRVVPTVSSDDWTGSEKHIIFPCLEELVIRDCPELRTLGLSPCSFETEGSHTFGRLHHATIYNCPQLMNLPQFGQTKYLSTISIEGVGSFPYIRLFVRALYIKGCASPSKLDQILMLIEGNLCLLEKLTIESCLDLTYLPWKTLSKLVSLEMLVIVDCPRLSLTLYPYNQDGGNFSFMSLLNKLVIRACSITGKQLSHLILQLPFLHYLTIGKCPKITSLLLGDVINGSDSSSTSDYLQLTTDGMLQIPSHLLIQLQYLSIDDFPDLVLLWKEGFHGFTSLRTLHITGCTQLLSPMITENKRPNKNSSLLPPLLHDLMVTHVHNELLPFLLSNLTSLSIFAISNSPELSSLVLHSCTSLETLIIEKCVGLSALEGLHSLPKLKHLRIFQCPSLAKTWGPSSVDRPGFSLYLDKLEIDTTVLFNTEVCKKLPSLRHLVFFMLSIKACPGIKSLPENGLPASLHELYVSSCSAELKEQCKKTKNVRCVYVDRNASKFIVICKLLRLYFRITKLGAWQRSLWLQPRTGGSNELMVLTKVLFTIATTVVFRTGLVISEL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.058506 | 0.097177 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0429100 | RBH | 0.868034 | 0.309523 | 1.520865 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g24170 | RBH | 0.516712 | 0.210679 | 0.396201 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0429100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012100 | RBH | 0.222125 | 2.470935 | 1.906732 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012120 | RBH | 0.051170 | 0.500445 | 0.643209 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0012050 | RBH | 0.693651 | 0.524824 | 3.424297 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011790 | RBH | 0.117513 | 0.027772 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0012200 | RBH | 1.247125 | 1.642782 | 7.443846 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0207500 | RBH | 1.630279 | 4.0232415 | 5.639372 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0012020 | RBH | 0.080402 | 0.076599 | 0.240842 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0219400 | RBH | 2.557436 | 7.4127605 | 13.3583735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012280 | RBH | 0.521379 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011930 | RBH | 0.554548 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011780 | RBH | 0.349432 | 0.0 | 0.181410 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0012060 | RBH | 0.000000 | 1.482165 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011970 | RBH | 0.128569 | 0.312266 | 0.737658 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011960 | RBH | 0.594706 | 3.464980 | 1.362069 |
