Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0136100 | OGI:10013980 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:2226411-2231401 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAACAAACATATTTATCTCTTTAATACTCCGCAAACTGTAAATGGCTCTACAGACTACACTAAAACATTAACAGAGTTCCTAAGGAAATATGTCTTGTCAAACATGCCAGTAACTTTTGGAAGATTTTACAAATGCCACATTGGTGTAAACTACAAATGTACAGGCCACCAGTAAGGTCGTGTAACCGATTATACCAAAGAAAAACACATCAAGGTACACATACAACAAATATGACTTTATAAGTGAGAGTGAAACGTGAAACAATTTCGCTCCCTAGCCCTATCTGATGGAATACTGGGTGCATACACAATTGTCAAGGATGATGAATGAGGCAAGGAATCACACACATGTTTGAACTCTGCTTCTCCATTGCCTTCGACAGGCTGCCAGCCCTAGCAAGCCATCAAGATTGAGCTACGATGGGGAGAGAGGGCAATGTTAGTCATGTACATATTGATTTTTGTACAAAAATTCGGAGGAAATCTAACGGTTGTTTGGACGCAATGTTATGAGAGGGAACAACGACAACTTAAGTTGCTAATAAAGTAAACCTACATCTTTCAGTGTCCCATTAGAAGTTCAAGTATAATTCTTTCAAACCATAGACCATTAAGTTTAGTGTCCTGCTTACATTGCCAACAACAGTGTATACATAAAACTGTGTTATCAATTTAGCCATATGCCTGTACACGACTAAAGGGAATAGAGCGGATAGGTGTTCAGACTTAGACCCAACTTAGTTAACAGCGTTCTTCACACAAAAAGAGAGAACACAAAAGGAGACTACATTTTTACACAAGATTGCTGTTGCACACTGTAATGCTGGATCAGATTGCTCAAATATAGCAAAGAAAAGGTCAGAGGAACATTAAATTTTAATTCATCATTCGTATGCTCTACCATGTATATATTGAAAATGCAAAACATATATGAATTACTAGTTGAGCGACGTACATTTCTTCGTCAGAGGCTGATCATGCGTTGAATACCACCACTGAATGTGCTTGAGCCTAGAACACCGATTTAGCAATGCAAGGAAATCTTCACTGATATGGACAAAGCATAGACGTTGGAGGGATGGAAGAAACTCGATGCCAGGTGGAATATCCATCAGCTTGTCAAGGTGTCTAAGCTGCAAAACACGAATACCTATCCCGGCACCTTCCTCAATCTCTAACCGATGTAGATTAGGCAAGTCCCGCAGTAACAGAAACTTCAAACTGGGAAACCAACCGCTCCTGAATATTAACAGTTCCCCAACATATGCTCTTGTAAGATTCAGCTGTGTCAGATTACATAATCGAGAGATAGGCGGGAGGGGATCTTGTTTCAACTGAGACCAAACAAGAAAAAGTCCACGCAATTTCTGTCCACCAGTTTGGAAAAGAGGAGACTCAAGTGTCCCCTCTGCCAATCTCCCTCTCAAACAGAGTTTCTGAAGGCTTAGCGGTGGGGGATCTAGCTTATTCAGTTGAACCTCACTCTCGTCACATGCAGCTATATGAATGTGGTACAAAAATCTCATCTTAAGTATAGACACGCAGAGGCGTTCACAGTGGATTTCCTTCACATTCCACACCCTTAAGCTTTTTAGCTGTGTCAACTCCCCCAAGTCTTTAACAGTCCGGTCCTGTGCTTCAATTGCATGTAATGTCTGCAGATTTGTGAAATTCGAAAGACCCTTTGGGATGCAAACACCGTGGCGACTTCTAAAATCCCTCCATGACGGATCATTGATTCTCTCAACAAGTAAGTGCCTCAGACTCTTCAGCTTGACTATTCCTTGAGGCAGTTCTTGTATGTAGGAGTTGAAAATATCCAACGTCAATAAGTTGGAGAGCCTCTCCACGGACTTGGGGAGAAACTTCACCTTCGAATGGCGCAAACCCAAATAGCGTAGGTTGAAAAGGCATCCAACAGCATCTGGCACTTTTTCAATCGCCAGCCCACGTAGTTCTAGTACAACAATGTACTTTGACTTGTCTGATATTGACTTAATTATTCTCAAGGATGGCATGGCCTTATCAAATACAATGCAAGATCGAAGACGAGGTAAGCATATACTTGATAAAATATTATTGCTGCATTTAGCTACCGCGAGACGGCGTATGCTTGTGTCCATGGTACTACAACGATTTCCATACTCGTAGTATGCAAGACCAAAACTTTGTTTCTGAGACAGGTCAATCGCCAACTCACGAACAATGTCATGCATCTTACAGGATTTTATTCTGCCAAATGAGTTGCATTCCATAAGCTGCAGCATATTTCTGTGAACCAGCTCAATTAAATAGCCTTCCGCCACATCTTCGAATGTATTCTCACCCTTTTCCTCAATGAACCCCTCTGCAATCCATAACCTTAAAAGCATCTTCCGATGAAGAATATAGTCCTCTGGAAACAAGGTACAATACAGGAAACAACTCTTCAGATAAGTTGGGAGGTATATGAAGCTTAAGTACAGAATATTCCTAACGTGGTCTAAGCCTGGGTTGTTATTCAGCTCCCAACTGAGTTGGTCATAAATTCGTCTCCATTCTGTTGGATTCTTCTCACGCACGGACAATAGGCTTCCAACAGACACAATAGCAAGAGGCAAGCCTTTACACTTGTTCAACATTTGTGTCGCCAAATTCTTCAGCTCAGTGGGACATTCGTGATTTGCTTCTCTCCGGAAAGCTTTCTTACAAAAAAGTTCCCAAGACTTTCCTTCTGACAAACCCTCTAGTGTTAGCACACGTCCTTCCGATGCGAATTCTGCAACATTACCAATACGTGTAGTAATCAGCAATCTACTTCCCTTAAAATTCTGAGCAAGAGCTCTTGACATATCGATGATTACTTCTGGTGTCCAAACATCGTCCAACACTATCAAGTATTTCTTCTCTTCAAGGAATCTCCTAAGTATCTCCTGAAGATTGATTATGTCGATACTGCCAATATTACTCTGAATATTTTCCTCATGAAAAAGCTGGACGCTTAGCTTTTTTAAGAGCTCCATCAGCGAATATGTTTGTGAAACAGATACCCATGCATGACAGTCATAATATTCTTGTTCATGCTTGTACACATTTGCAGTTAGAGCTGTTTTACCAAGGCCTCCCATGCCATGAAGAACTATTGTAGAGCATGCCATCCCATCTTCTCTCATCCAATTGAACAATGTATCTCTGTTTTCTTCGATTCCCACGAGATCTTCGCAAATAGAACGGGAAGTACTTGCTAGATGTTGGGACTTCTCGACAATATAGCCAGAATTGTTGGCATACCCAGGGCTTGCATTAGGAATCCATCGATCTTTTACTTGAAATAGGTGGACGAGACTGGACTCTGCTTCCTTTATGAGGCAGACCATCCGGTTTAATGAACGCAAAGCTTCAGGTTGATTGATTCCCTTCTTCAGATAAAAGCTCCATCCTTTGTCATGTCTCTGCCTTACTAAGTGTAGATACTCATCTACTATGTCCTCAATTCCATGTGCTAGCTTCCGCACCTCATCCACCCAAATTTCATATGCCTGATCATTTCGATTGCGTACGTCCATTCTGCAAAGAAATTCATGCATCAACCTAAGCTCACGACATATGCGGCTCATGCTGCCTTGGAGTTCTGCAAGCTGTGCAAACAAGTTTCTGTACAGTGAACTTGCTTGGTTGATTACTTCATTTCCTAGAGCAGCACCAATTTTCTTCACAACTAAAAGTATCACTGCTTCTGCCATTACTCTCGATTTGTAAATTCACTGAATTATTAGCTTGGATAAATACTCTCTCAAATTTTAAGAGATCTGCAAGAGAGTCATCATATTAATGCATTGTGTAGATCTATCAAATTGGATGACTACTTAACAAACAGTGACCATAATCATTGCATCATAAATTACAAGGGCTGATACAAACATCATGGTCAGCCAACATCCTTTCAATTATATCACCAACATATAAAGTTGCATTCGTTATGTTAAAATAATCATCCCCTGCATAGTTGATATTTCAGAGAACATCCGTTACTATGTGTTAATGACAACTAGCTTTTTTGGTGGTCAAAAACATTCCATACCATTTTTATATATGACATGCTGGAAAATATATTGCATGTTATCGTGATTGGCAGGCTTTGATCAACCTCAATCAATCAAATCTGAATAGGAATGTGGGCTCTTATGTTTCTATGTCCGCCAAGCCACTGATATGCCCTTCAATGAACTCGAAAATGGGAAGACACCAGCTAGAATGGATATGAATTGAGATAAGGAGGAAATGGAAGGACCTCAAGGAGCTGTTCAATTTTGGCTTGTCATTATTTGCCCCCAATTCTCAGAAACTGGCTGGCTGCGCTCTAGCCCAAGACCAGTCCTGGTAAATGTAAAATGGATTTGATTCACTACATTGGATACAGCAACGTCGTTTGGTTTCTAATCATTTCTTTTTATGTTTCATACGAACTTCCACGATATTAGCTAGGAATACAGGATTTCAATTGGGTCCTATCTTACTTAGATTACCCTCCATCAATATTATCGTAACTTTTTTTTTGTGGGCATGTGCGGCACCAGAATGTGGCCTTCCCTGATATCTAAATCTCTACTGTTGGAATTATTATATGGACCACTAACTGATCTCGTTATTAAACGTAATCTAAACATAAAGAGCCTACGTTCTGTTGTAATTAATTACTAAACTTGAATCACCTGGACCTATTTCCCTTTCCTATTTCGGGCATGCGCCAGGATTTAACCCTAAAGTTTTGTTAATAAGAAGGAATGAATTTTCAGAAAAAAAAAAAGCATCCGCCCAGGAGAGATACCGCTGCTTTCGCTGTCGATGGCAACGCCGGGAGAGGGGAGACACCACCGTCGTCGGTCGCCGCCGCCGCTGCATGTCGGTAGGAGCAGAGCCCCCACCCGCACTGGATCCAGCCGGCTGCCAGCCGATGGCCGCCCCAGCACACCTCTGCGCCGGATCCAGGAACCCACCCACACATATCCTT
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| CDS seq | ATGGCAGAAGCAGTGATACTTTTAGTTGTGAAGAAAATTGGTGCTGCTCTAGGAAATGAAGTAATCAACCAAGCAAGTTCACTGTACAGAAACTTGTTTGCACAGCTTGCAGAACTCCAAGGCAGCATGAGCCGCATATGTCGTGAGCTTAGGTTGATGCATGAATTTCTTTGCAGAATGGACGTACGCAATCGAAATGATCAGGCATATGAAATTTGGGTGGATGAGGTGCGGAAGCTAGCACATGGAATTGAGGACATAGTAGATGAGTATCTACACTTAGTAAGGCAGAGACATGACAAAGGATGGAGCTTTTATCTGAAGAAGGGAATCAATCAACCTGAAGCTTTGCGTTCATTAAACCGGATGGTCTGCCTCATAAAGGAAGCAGAGTCCAGTCTCGTCCACCTATTTCAAGTAAAAGATCGATGGATTCCTAATGCAAGCCCTGGGTATGCCAACAATTCTGGCTATATTGTCGAGAAGTCCCAACATCTAGCAAGTACTTCCCGTTCTATTTGCGAAGATCTCGTGGGAATCGAAGAAAACAGAGATACATTGTTCAATTGGATGAGAGAAGATGGGATGGCATGCTCTACAATAGTTCTTCATGGCATGGGAGGCCTTGGTAAAACAGCTCTAACTGCAAATGTGTACAAGCATGAACAAGAATATTATGACTGTCATGCATGGGTATCTGTTTCACAAACATATTCGCTGATGGAGCTCTTAAAAAAGCTAAGCGTCCAGCTTTTTCATGAGGAAAATATTCAGAGTAATATTGGCAGTATCGACATAATCAATCTTCAGGAGATACTTAGGAGATTCCTTGAAGAGAAGAAATACTTGATAGTGTTGGACGATGTTTGGACACCAGAAGTAATCATCGATATGTCAAGAGCTCTTGCTCAGAATTTTAAGGGAAGTAGATTGCTGATTACTACACGTATTGGTAATGTTGCAGAATTCGCATCGGAAGGACGTGTGCTAACACTAGAGGGTTTGTCAGAAGGAAAGTCTTGGGAACTTTTTTGTAAGAAAGCTTTCCGGAGAGAAGCAAATCACGAATGTCCCACTGAGCTGAAGAATTTGGCGACACAAATGTTGAACAAGTGTAAAGGCTTGCCTCTTGCTATTGTGTCTGTTGGAAGCCTATTGTCCGTGCGTGAGAAGAATCCAACAGAATGGAGACGAATTTATGACCAACTCAGTTGGGAGCTGAATAACAACCCAGGCTTAGACCACGTTAGGAATATTCTGTACTTAAGCTTCATATACCTCCCAACTTATCTGAAGAGTTGTTTCCTGTATTGTACCTTGTTTCCAGAGGACTATATTCTTCATCGGAAGATGCTTTTAAGGTTATGGATTGCAGAGGGGTTCATTGAGGAAAAGGGTGAGAATACATTCGAAGATGTGGCGGAAGGCTATTTAATTGAGCTGGTTCACAGAAATATGCTGCAGCTTATGGAATGCAACTCATTTGGCAGAATAAAATCCTGTAAGATGCATGACATTGTTCGTGAGTTGGCGATTGACCTGTCTCAGAAACAAAGTTTTGGTCTTGCATACTACGAGTATGGAAATCGTTGTAGTACCATGGACACAAGCATACGCCGTCTCGCGGTAGCTAAATGCAGCAATAATATTTTATCAAGTATATGCTTACCTCGTCTTCGATCTTGCATTGTATTTGATAAGGCCATGCCATCCTTGAGAATAATTAAGTCAATATCAGACAAGTCAAAGTACATTGTTGTACTAGAACTACGTGGGCTGGCGATTGAAAAAGTGCCAGATGCTGTTGGATGCCTTTTCAACCTACGCTATTTGGGTTTGCGCCATTCGAAGGTGAAGTTTCTCCCCAAGTCCGTGGAGAGGCTCTCCAACTTATTGACGTTGGATATTTTCAACTCCTACATACAAGAACTGCCTCAAGGAATAGTCAAGCTGAAGAGTCTGAGGCACTTACTTGTTGAGAGAATCAATGATCCGTCATGGAGGGATTTTAGAAGTCGCCACGGTGTTTGCATCCCAAAGGGTCTTTCGAATTTCACAAATCTGCAGACATTACATGCAATTGAAGCACAGGACCGGACTGTTAAAGACTTGGGGGAGTTGACACAGCTAAAAAGCTTAAGGGTGTGGAATGTGAAGGAAATCCACTGTGAACGCCTCTGCGTGTCTATACTTAAGATGAGATTTTTGTACCACATTCATATAGCTGCATGTGACGAGAGTGAGGTTCAACTGAATAAGCTAGATCCCCCACCGCTAAGCCTTCAGAAACTCTGTTTGAGAGGGAGATTGGCAGAGGGGACACTTGAGTCTCCTCTTTTCCAAACTGGTGGACAGAAATTGCGTGGACTTTTTCTTGTTTGGTCTCAGTTGAAACAAGATCCCCTCCCGCCTATCTCTCGATTATGTAATCTGACACAGCTGAATCTTACAAGAGCATATGTTGGGGAACTGTTAATATTCAGGAGCGGTTGGTTTCCCAGTTTGAAGTTTCTGTTACTGCGGGACTTGCCTAATCTACATCGGTTAGAGATTGAGGAAGGTGCCGGGATAGGTATTCGTGTTTTGCAGCTTAGACACCTTGACAAGCTGATGGATATTCCACCTGGCATCGAGTTTCTTCCATCCCTCCAACGTCTATGCTTTGTCCATATCAGTGAAGATTTCCTTGCATTGCTAAATCGGTGTTCTAGGCTCAAGCACATTCAGTGGTGGTATTCAACGCATGATCAGCCTCTGACGAAGAAATGTACGTCGCTCAACTAG
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| Protein seq | MAEAVILLVVKKIGAALGNEVINQASSLYRNLFAQLAELQGSMSRICRELRLMHEFLCRMDVRNRNDQAYEIWVDEVRKLAHGIEDIVDEYLHLVRQRHDKGWSFYLKKGINQPEALRSLNRMVCLIKEAESSLVHLFQVKDRWIPNASPGYANNSGYIVEKSQHLASTSRSICEDLVGIEENRDTLFNWMREDGMACSTIVLHGMGGLGKTALTANVYKHEQEYYDCHAWVSVSQTYSLMELLKKLSVQLFHEENIQSNIGSIDIINLQEILRRFLEEKKYLIVLDDVWTPEVIIDMSRALAQNFKGSRLLITTRIGNVAEFASEGRVLTLEGLSEGKSWELFCKKAFRREANHECPTELKNLATQMLNKCKGLPLAIVSVGSLLSVREKNPTEWRRIYDQLSWELNNNPGLDHVRNILYLSFIYLPTYLKSCFLYCTLFPEDYILHRKMLLRLWIAEGFIEEKGENTFEDVAEGYLIELVHRNMLQLMECNSFGRIKSCKMHDIVRELAIDLSQKQSFGLAYYEYGNRCSTMDTSIRRLAVAKCSNNILSSICLPRLRSCIVFDKAMPSLRIIKSISDKSKYIVVLELRGLAIEKVPDAVGCLFNLRYLGLRHSKVKFLPKSVERLSNLLTLDIFNSYIQELPQGIVKLKSLRHLLVERINDPSWRDFRSRHGVCIPKGLSNFTNLQTLHAIEAQDRTVKDLGELTQLKSLRVWNVKEIHCERLCVSILKMRFLYHIHIAACDESEVQLNKLDPPPLSLQKLCLRGRLAEGTLESPLFQTGGQKLRGLFLVWSQLKQDPLPPISRLCNLTQLNLTRAYVGELLIFRSGWFPSLKFLLLRDLPNLHRLEIEEGAGIGIRVLQLRHLDKLMDIPPGIEFLPSLQRLCFVHISEDFLALLNRCSRLKHIQWWYSTHDQPLTKKCTSLN |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0136100 | OsNip_10t0136100-01 | Chr10 | 2226411 | 2231401 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCAGAAGCAGTGATACTTTTAGTTGTGAAGAAAATTGGTGCTGCTCTAGGAAATGAAGTAATCAACCAAGCAAGTTCACTGTACAGAAACTTGTTTGCACAGCTTGCAGAACTCCAAGGCAGCATGAGCCGCATATGTCGTGAGCTTAGGTTGATGCATGAATTTCTTTGCAGAATGGACGTACGCAATCGAAATGATCAGGCATATGAAATTTGGGTGGATGAGGTGCGGAAGCTAGCACATGGAATTGAGGACATAGTAGATGAGTATCTACACTTAGTAAGGCAGAGACATGACAAAGGATGGAGCTTTTATCTGAAGAAGGGAATCAATCAACCTGAAGCTTTGCGTTCATTAAACCGGATGGTCTGCCTCATAAAGGAAGCAGAGTCCAGTCTCGTCCACCTATTTCAAGTAAAAGATCGATGGATTCCTAATGCAAGCCCTGGGTATGCCAACAATTCTGGCTATATTGTCGAGAAGTCCCAACATCTAGCAAGTACTTCCCGTTCTATTTGCGAAGATCTCGTGGGAATCGAAGAAAACAGAGATACATTGTTCAATTGGATGAGAGAAGATGGGATGGCATGCTCTACAATAGTTCTTCATGGCATGGGAGGCCTTGGTAAAACAGCTCTAACTGCAAATGTGTACAAGCATGAACAAGAATATTATGACTGTCATGCATGGGTATCTGTTTCACAAACATATTCGCTGATGGAGCTCTTAAAAAAGCTAAGCGTCCAGCTTTTTCATGAGGAAAATATTCAGAGTAATATTGGCAGTATCGACATAATCAATCTTCAGGAGATACTTAGGAGATTCCTTGAAGAGAAGAAATACTTGATAGTGTTGGACGATGTTTGGACACCAGAAGTAATCATCGATATGTCAAGAGCTCTTGCTCAGAATTTTAAGGGAAGTAGATTGCTGATTACTACACGTATTGGTAATGTTGCAGAATTCGCATCGGAAGGACGTGTGCTAACACTAGAGGGTTTGTCAGAAGGAAAGTCTTGGGAACTTTTTTGTAAGAAAGCTTTCCGGAGAGAAGCAAATCACGAATGTCCCACTGAGCTGAAGAATTTGGCGACACAAATGTTGAACAAGTGTAAAGGCTTGCCTCTTGCTATTGTGTCTGTTGGAAGCCTATTGTCCGTGCGTGAGAAGAATCCAACAGAATGGAGACGAATTTATGACCAACTCAGTTGGGAGCTGAATAACAACCCAGGCTTAGACCACGTTAGGAATATTCTGTACTTAAGCTTCATATACCTCCCAACTTATCTGAAGAGTTGTTTCCTGTATTGTACCTTGTTTCCAGAGGACTATATTCTTCATCGGAAGATGCTTTTAAGGTTATGGATTGCAGAGGGGTTCATTGAGGAAAAGGGTGAGAATACATTCGAAGATGTGGCGGAAGGCTATTTAATTGAGCTGGTTCACAGAAATATGCTGCAGCTTATGGAATGCAACTCATTTGGCAGAATAAAATCCTGTAAGATGCATGACATTGTTCGTGAGTTGGCGATTGACCTGTCTCAGAAACAAAGTTTTGGTCTTGCATACTACGAGTATGGAAATCGTTGTAGTACCATGGACACAAGCATACGCCGTCTCGCGGTAGCTAAATGCAGCAATAATATTTTATCAAGTATATGCTTACCTCGTCTTCGATCTTGCATTGTATTTGATAAGGCCATGCCATCCTTGAGAATAATTAAGTCAATATCAGACAAGTCAAAGTACATTGTTGTACTAGAACTACGTGGGCTGGCGATTGAAAAAGTGCCAGATGCTGTTGGATGCCTTTTCAACCTACGCTATTTGGGTTTGCGCCATTCGAAGGTGAAGTTTCTCCCCAAGTCCGTGGAGAGGCTCTCCAACTTATTGACGTTGGATATTTTCAACTCCTACATACAAGAACTGCCTCAAGGAATAGTCAAGCTGAAGAGTCTGAGGCACTTACTTGTTGAGAGAATCAATGATCCGTCATGGAGGGATTTTAGAAGTCGCCACGGTGTTTGCATCCCAAAGGGTCTTTCGAATTTCACAAATCTGCAGACATTACATGCAATTGAAGCACAGGACCGGACTGTTAAAGACTTGGGGGAGTTGACACAGCTAAAAAGCTTAAGGGTGTGGAATGTGAAGGAAATCCACTGTGAACGCCTCTGCGTGTCTATACTTAAGATGAGATTTTTGTACCACATTCATATAGCTGCATGTGACGAGAGTGAGGTTCAACTGAATAAGCTAGATCCCCCACCGCTAAGCCTTCAGAAACTCTGTTTGAGAGGGAGATTGGCAGAGGGGACACTTGAGTCTCCTCTTTTCCAAACTGGTGGACAGAAATTGCGTGGACTTTTTCTTGTTTGGTCTCAGTTGAAACAAGATCCCCTCCCGCCTATCTCTCGATTATGTAATCTGACACAGCTGAATCTTACAAGAGCATATGTTGGGGAACTGTTAATATTCAGGAGCGGTTGGTTTCCCAGTTTGAAGTTTCTGTTACTGCGGGACTTGCCTAATCTACATCGGTTAGAGATTGAGGAAGGTGCCGGGATAGGTATTCGTGTTTTGCAGCTTAGACACCTTGACAAGCTGATGGATATTCCACCTGGCATCGAGTTTCTTCCATCCCTCCAACGTCTATGCTTTGTCCATATCAGTGAAGATTTCCTTGCATTGCTAAATCGGTGTTCTAGGCTCAAGCACATTCAGTGGTGGTATTCAACGCATGATCAGCCTCTGACGAAGAAATCTCAATCTTGA
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| Protein seq | MAEAVILLVVKKIGAALGNEVINQASSLYRNLFAQLAELQGSMSRICRELRLMHEFLCRMDVRNRNDQAYEIWVDEVRKLAHGIEDIVDEYLHLVRQRHDKGWSFYLKKGINQPEALRSLNRMVCLIKEAESSLVHLFQVKDRWIPNASPGYANNSGYIVEKSQHLASTSRSICEDLVGIEENRDTLFNWMREDGMACSTIVLHGMGGLGKTALTANVYKHEQEYYDCHAWVSVSQTYSLMELLKKLSVQLFHEENIQSNIGSIDIINLQEILRRFLEEKKYLIVLDDVWTPEVIIDMSRALAQNFKGSRLLITTRIGNVAEFASEGRVLTLEGLSEGKSWELFCKKAFRREANHECPTELKNLATQMLNKCKGLPLAIVSVGSLLSVREKNPTEWRRIYDQLSWELNNNPGLDHVRNILYLSFIYLPTYLKSCFLYCTLFPEDYILHRKMLLRLWIAEGFIEEKGENTFEDVAEGYLIELVHRNMLQLMECNSFGRIKSCKMHDIVRELAIDLSQKQSFGLAYYEYGNRCSTMDTSIRRLAVAKCSNNILSSICLPRLRSCIVFDKAMPSLRIIKSISDKSKYIVVLELRGLAIEKVPDAVGCLFNLRYLGLRHSKVKFLPKSVERLSNLLTLDIFNSYIQELPQGIVKLKSLRHLLVERINDPSWRDFRSRHGVCIPKGLSNFTNLQTLHAIEAQDRTVKDLGELTQLKSLRVWNVKEIHCERLCVSILKMRFLYHIHIAACDESEVQLNKLDPPPLSLQKLCLRGRLAEGTLESPLFQTGGQKLRGLFLVWSQLKQDPLPPISRLCNLTQLNLTRAYVGELLIFRSGWFPSLKFLLLRDLPNLHRLEIEEGAGIGIRVLQLRHLDKLMDIPPGIEFLPSLQRLCFVHISEDFLALLNRCSRLKHIQWWYSTHDQPLTKKSQS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0136100 | OsNip_10t0136100-02 | Chr10 | 2227222 | 2231360 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCAGAAGCAGTGATACTTTTAGTTGTGAAGAAAATTGGTGCTGCTCTAGGAAATGAAGTAATCAACCAAGCAAGTTCACTGTACAGAAACTTGTTTGCACAGCTTGCAGAACTCCAAGGCAGCATGAGCCGCATATGTCGTGAGCTTAGGTTGATGCATGAATTTCTTTGCAGAATGGACGTACGCAATCGAAATGATCAGGCATATGAAATTTGGGTGGATGAGGTGCGGAAGCTAGCACATGGAATTGAGGACATAGTAGATGAGTATCTACACTTAGTAAGGCAGAGACATGACAAAGGATGGAGCTTTTATCTGAAGAAGGGAATCAATCAACCTGAAGCTTTGCGTTCATTAAACCGGATGGTCTGCCTCATAAAGGAAGCAGAGTCCAGTCTCGTCCACCTATTTCAAGTAAAAGATCGATGGATTCCTAATGCAAGCCCTGGGTATGCCAACAATTCTGGCTATATTGTCGAGAAGTCCCAACATCTAGCAAGTACTTCCCGTTCTATTTGCGAAGATCTCGTGGGAATCGAAGAAAACAGAGATACATTGTTCAATTGGATGAGAGAAGATGGGATGGCATGCTCTACAATAGTTCTTCATGGCATGGGAGGCCTTGGTAAAACAGCTCTAACTGCAAATGTGTACAAGCATGAACAAGAATATTATGACTGTCATGCATGGGTATCTGTTTCACAAACATATTCGCTGATGGAGCTCTTAAAAAAGCTAAGCGTCCAGCTTTTTCATGAGGAAAATATTCAGAGTAATATTGGCAGTATCGACATAATCAATCTTCAGGAGATACTTAGGAGATTCCTTGAAGAGAAGAAATACTTGATAGTGTTGGACGATGTTTGGACACCAGAAGTAATCATCGATATGTCAAGAGCTCTTGCTCAGAATTTTAAGGGAAGTAGATTGCTGATTACTACACGTATTGGTAATGTTGCAGAATTCGCATCGGAAGGACGTGTGCTAACACTAGAGGGTTTGTCAGAAGGAAAGTCTTGGGAACTTTTTTGTAAGAAAGCTTTCCGGAGAGAAGCAAATCACGAATGTCCCACTGAGCTGAAGAATTTGGCGACACAAATGTTGAACAAGTGTAAAGGCTTGCCTCTTGCTATTGTGTCTGTTGGAAGCCTATTGTCCGTGCGTGAGAAGAATCCAACAGAATGGAGACGAATTTATGACCAACTCAGTTGGGAGCTGAATAACAACCCAGGCTTAGACCACGTTAGGAATATTCTGTACTTAAGCTTCATATACCTCCCAACTTATCTGAAGAGTTGTTTCCTGTATTGTACCTTGTTTCCAGAGGACTATATTCTTCATCGGAAGATGCTTTTAAGGTTATGGATTGCAGAGGGGTTCATTGAGGAAAAGGGTGAGAATACATTCGAAGATGTGGCGGAAGGCTATTTAATTGAGCTGGTTCACAGAAATATGCTGCAGCTTATGGAATGCAACTCATTTGGCAGAATAAAATCCTGTAAGATGCATGACATTGTTCGTGAGTTGGCGATTGACCTGTCTCAGAAACAAAGTTTTGGTCTTGCATACTACGAGTATGGAAATCGTTGTAGTACCATGGACACAAGCATACGCCGTCTCGCGGTAGCTAAATGCAGCAATAATATTTTATCAAGTATATGCTTACCTCGTCTTCGATCTTGCATTGTATTTGATAAGGCCATGCCATCCTTGAGAATAATTAAGTCAATATCAGACAAGTCAAAGTACATTGTTGTACTAGAACTACGTGGGCTGGCGATTGAAAAAGTGCCAGATGCTGTTGGATGCCTTTTCAACCTACGCTATTTGGGTTTGCGCCATTCGAAGGTGAAGTTTCTCCCCAAGTCCGTGGAGAGGCTCTCCAACTTATTGACGTTGGATATTTTCAACTCCTACATACAAGAACTGCCTCAAGGAATAGTCAAGCTGAAGAGTCTGAGGCACTTACTTGTTGAGAGAATCAATGATCCGTCATGGAGGGATTTTAGAAGTCGCCACGGTGTTTGCATCCCAAAGGGTCTTTCGAATTTCACAAATCTGCAGACATTACATGCAATTGAAGCACAGGACCGGACTGTTAAAGACTTGGGGGAGTTGACACAGCTAAAAAGCTTAAGGGTGTGGAATGTGAAGGAAATCCACTGTGAACGCCTCTGCGTGTCTATACTTAAGATGAGATTTTTGTACCACATTCATATAGCTGCATGTGACGAGAGTGAGGTTCAACTGAATAAGCTAGATCCCCCACCGCTAAGCCTTCAGAAACTCTGTTTGAGAGGGAGATTGGCAGAGGGGACACTTGAGTCTCCTCTTTTCCAAACTGGTGGACAGAAATTGCGTGGACTTTTTCTTGTTTGGTCTCAGTTGAAACAAGATCCCCTCCCGCCTATCTCTCGATTATGTAATCTGACACAGCTGAATCTTACAAGAGCATATGTTGGGGAACTGTTAATATTCAGGAGCGGTTGGTTTCCCAGTTTGAAGTTTCTGTTACTGCGGGACTTGCCTAATCTACATCGGTTAGAGATTGAGGAAGGTGCCGGGATAGGTATTCGTGTTTTGCAGCTTAGACACCTTGACAAGCTGATGGATATTCCACCTGGCATCGAGTTTCTTCCATCCCTCCAACGTCTATGCTTTGTCCATATCAGTGAAGATTTCCTTGCATTGCTAAATCGGTGTTCTAGGCTCAAGCACATTCAGTGGTGGTATTCAACGCATGATCAGCCTCTGACGAAGAAATGTACGTCGCTCAACTAG
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| Protein seq | MAEAVILLVVKKIGAALGNEVINQASSLYRNLFAQLAELQGSMSRICRELRLMHEFLCRMDVRNRNDQAYEIWVDEVRKLAHGIEDIVDEYLHLVRQRHDKGWSFYLKKGINQPEALRSLNRMVCLIKEAESSLVHLFQVKDRWIPNASPGYANNSGYIVEKSQHLASTSRSICEDLVGIEENRDTLFNWMREDGMACSTIVLHGMGGLGKTALTANVYKHEQEYYDCHAWVSVSQTYSLMELLKKLSVQLFHEENIQSNIGSIDIINLQEILRRFLEEKKYLIVLDDVWTPEVIIDMSRALAQNFKGSRLLITTRIGNVAEFASEGRVLTLEGLSEGKSWELFCKKAFRREANHECPTELKNLATQMLNKCKGLPLAIVSVGSLLSVREKNPTEWRRIYDQLSWELNNNPGLDHVRNILYLSFIYLPTYLKSCFLYCTLFPEDYILHRKMLLRLWIAEGFIEEKGENTFEDVAEGYLIELVHRNMLQLMECNSFGRIKSCKMHDIVRELAIDLSQKQSFGLAYYEYGNRCSTMDTSIRRLAVAKCSNNILSSICLPRLRSCIVFDKAMPSLRIIKSISDKSKYIVVLELRGLAIEKVPDAVGCLFNLRYLGLRHSKVKFLPKSVERLSNLLTLDIFNSYIQELPQGIVKLKSLRHLLVERINDPSWRDFRSRHGVCIPKGLSNFTNLQTLHAIEAQDRTVKDLGELTQLKSLRVWNVKEIHCERLCVSILKMRFLYHIHIAACDESEVQLNKLDPPPLSLQKLCLRGRLAEGTLESPLFQTGGQKLRGLFLVWSQLKQDPLPPISRLCNLTQLNLTRAYVGELLIFRSGWFPSLKFLLLRDLPNLHRLEIEEGAGIGIRVLQLRHLDKLMDIPPGIEFLPSLQRLCFVHISEDFLALLNRCSRLKHIQWWYSTHDQPLTKKCTSLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.438131 | 0.362949 | 1.680767 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0132700 | SBH | 2.224965 | 3.007854 | 2.847011 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04674 | RBH | 0.295512 | 0.243475 | 0.443199 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0136100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001850 | RBH | 0.293854 | 9.704144 | 2.968899 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001820 | RBH | 0.037464 | 1.563843 | 1.518027 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001800 | RBH | 0.138171 | 11.068842 | 4.079497 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001790 | RBH | 0.0 | 0.119620 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003410 | RBH | 1.861666 | 7.657732 | 1.572157 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0033900 | SBH | 0.6370025 | 3.3276555 | 4.9562595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0007800 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0038900 | SBH | 0.015219 | 1.538173 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003430 | RBH | 0.208589 | 0.210422 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003460 | RBH | 0.337359 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003590 | RBH | 1.606913 | 10.667983 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0007490 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003670 | RBH | 0.152734 | 5.336367 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003500 | RBH | 0.057116 | 0.322945 | 0.822270 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001740 | RBH | 0.232457 | 8.996502 | 1.655302 |
