Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_10g0001820 OGI:10013980 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr10:2560589-2565585
Gene Symbol -
DNA seq

tggaaacttagaacaaacatatttatctctttaatactccgcaaactgtaaatggctctacagactacactaaaacattaacagagttcctaaggaaatatgtcttgtcaaacatgccagtaacttttggaagattttacaaatgccacattggtgtaaactacaaatgtacaggccaccagtaaggtcgtgtaaccgattataccaaagaaaaacacatcaaggtacacatacaacaaatatgactttataagtgagagtgaaacgtgaaacaatttcgctccctagccctatctgatggaatactgggtgcatacacaattgtcaaggatgatgaatgaggcaaggaatcacacacatgtttgaactctgcttctccattgccttcgacaggctgccagccctagcaagccatcaagattgagctacgatggggagagagggcaatgttagtcatgtacatattgatttttgtacaaaaattcggaggaaatctaacggttgtttggacgcaatgttatgagagggaacaacgacaacttaagttgctaataaagtaaacctacatctttcagtgtcccattagaagttcaagtataattctttcaaaccatagaccattaagtttagtgtcctgcttacattgccaacaacagtgtatacataaaactgtgttatcaatttagccatatgcctgtacacgactaaagggaatagagcggataggtgttcagacttagacccaacttagttaacagcgttcttcacacaaaaagagagaacacaaaaggagactacatttttacacaagattgctgttgcacactgtaatgctggatcagattgctcaaatatagcaaagaaaaggtcagaggaacattaaattttaattcatcattcgtatgctctaccatgtatatattgaaaatgcaaaacatatatgaattactagttgagcgacgtacatttcttcgtcagaggctgatcatgcgttgaataccaccactgaatgtgcttgagcctagaacaccgatttagcaatgcaaggaaatcttcactgatatggacaaagcatagacgttggagggatggaagaaactcgatgccaggtggaatatccatcagcttgtcaaggtgtctaagctgcaaaacacgaatacctatcccggcaccttcctcaatctctaaccgatgtagattaggcaagtcccgcagtaacagaaacttcaaactgggaaaccaaccgctcctgaatattaacagttccccaacatatgctcttgtaagattcagctgtgtcagattacataatcgagagataggcgggaggggatcttgtttcaactgagaccaaacaagaaaaagtccacgcaatttctgtccaccagtttggaaaagaggagactcaagtgtcccctctgccaatctccctctcaaacagagtttctgaaggcttagcggtgggggatctagcttattcagttgaacctcactctcgtcacatgcagctatatgaatgtggtacaaaaatctcatcttaagtatagacacgcagaggcgttcacagtggatttccttcacattccacacccttaagctttttagctgtgtcaactcccccaagtctttaacagtccggtcctgtgcttcaattgcatgtaatgtctgcagatttgtgaaattcgaaagaccctttgggatgcaaacaccgtggcgacttctaaaatccctccatgacggatcattgattctctcaacaagtaagtgcctcagactcttcagcttgactattccttgaggcagttcttgtatgtaggagttgaaaatatccaacgtcaataagttggagagcctctccacggacttggggagaaacttcaccttcgaatggcgcaaacccaaatagcgtaggttgaaaaggcatccaacagcatctggcactttttcaatcgccagcccacgtagttctagtacaacaatgtactttgacttgtctgatattgacttaattattctcaaggatggcatggccttatcaaatacaatgcaagatcgaagacgaggtaagcatatacttgataaaatattattgctgcatttagctaccgcgagacggcgtatgcttgtgtccatggtactacaacgatttccatactcgtagtatgcaagaccaaaactttgtttctgagacaggtcaatcgccaactcacgaacaatgtcatgcatcttacaggattttattctgccaaatgagttgcattccataagctgcagcatatttctgtgaaccagctcaattaaatagccttccgccacatcttcgaatgtattctcacccttttcctcaatgaacccctctgcaatccataaccttaaaagcatcttccgatgaagaatatagtcctctggaaacaaggtacaatacaggaaacaactcttcagataagttgggaggtatatgaagcttaagtacagaatattcctaacgtggtctaagcctgggttgttattcagctcccaactgagttggtcataaattcgtctccattctgttggattcttctcacgcacggacaataggcttccaacagacacaatagcaagaggcaagcctttacacttgttcaacatttgtgtcgccaaattcttcagctcagtgggacattcgtgatttgcttctctccggaaagctttcttacaaaaaagttcccaagactttccttctgacaaaccctctagtgttagcacacgtccttccgatgcgaattctgcaacattaccaatacgtgtagtaatcagcaatctacttcccttaaaattctgagcaagagctcttgacatatcgatgattacttctggtgtccaaacatcgtccaacactatcaagtatttcttctcttcaaggaatctcctaagtatctcctgaagattgattatgtcgatactgccaatattactctgaatattttcctcatgaaaaagctggacgcttagcttttttaagagctccatcagcgaatatgtttgtgaaacagatacccatgcatgacagtcataatattcttgttcatgcttgtacacatttgcagttagagctgttttaccaaggcctcccatgccatgaagaactattgtagagcatgccatcccatcttctctcatccaattgaacaatgtatctctgttttcttcgattcccacgagatcttcgcaaatagaacgggaagtacttgctagatgttgggacttctcgacaatatagccagaattgttggcatacccagggcttgcattaggaatccatcgatcttttacttgaaataggtggacgagactggactctgcttcctttatgaggcagaccatccggtttaatgaacgcaaagcttcaggttgattgattcccttcttcagataaaagctccatcctttgtcatgtctctgccttactaagtgtagatactcatctactatgtcctcaattccatgtgctagcttccgcacctcatccacccaaatttcatatgcctgatcatttcgattgcgtacgtccattctgcaaagaaattcatgcatcaacctaagctcacgacatatgcggctcatgctgccttggagttctgcaagctgtgcaaacaagtttctgtacagtgaacttgcttggttgattacttcatttcctagagcagcaccaattttcttcacaactaaaagtatcactgcttctgccattactctcgatttgtaaattcactgaattattagcttggataaatactctctcaaattttaagagatctgcaagagagtcatcatattaatgcattgtgtagatctatcaaattggatgactacttaacaaacagtgaccataatcattgcatcataaattacaagggctgatacaaacatcatggtcagccaacatcctttcaattatatcaccaacatataaagttgcattcgttatgttaaaataatcatcccctgcatagttgatatttcagagaacatccgttactatgtgttaatgacaactagcttttttggtggtcaaaaacattccataccatttttatatatgacatgctggaaaatatattgcatgttatcgtgattggcaggctttgatcaacctcaatcaatcaaatctgaataggaatgtgggctcttatgtttctatgtccgccaagccactgatatgcccttcaatgaactcgaaaatgggaagacaccagctagaatggatatgaattgagataaggaggaaatggaaggacctcaaggagctgttcaattttggcttgtcattatttgcccccaattctcagaaactggctggctgcgctctagcccaagaccagtcctggtaaatgtaaaatggatttgattcactacattggatacagcaacgtcgtttggtttctaatcatttctttttatgtttcatacgaacttccacgatattagctaggaatacaggatttcaattgggtcctatcttacttagattaccctccatcaatattatcgtaactttttttttgtgggcatgtgcggcaccagaatgtggccttccctgatatctaaatctctactgttggaattattatatggaccactaactgatctcgttattaaacgtaatctaaacataaagagcctacgttctgttgtaattaattactaaacttgaatcacctggacctatttccctttcctatttcgggcatgcgccaggatttaaccctaaagttttgttaataagaaggaatgaattttcagaaaaaaaaaaagcatccgcccaggagagataccgctgctttcgctgtcgatggcaacgccgggagaggggagacaccaccgtcgtcggtcgccgccgccgctgcatgtcggtaggagcagagcccccacccgcactggatccagccggctgccagccgatggccgccccagcacacctctgcgccggatccaggaacccacccacacatatc

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CDS seq

atggcagaagcagtgatacttttagttgtgaagaaaattggtgctgctctaggaaatgaagtaatcaaccaagcaagttcactgtacagaaacttgtttgcacagcttgcagaactccaaggcagcatgagccgcatatgtcgtgagcttaggttgatgcatgaatttctttgcagaatggacgtacgcaatcgaaatgatcaggcatatgaaatttgggtggatgaggtgcggaagctagcacatggaattgaggacatagtagatgagtatctacacttagtaaggcagagacatgacaaaggatggagcttttatctgaagaagggaatcaatcaacctgaagctttgcgttcattaaaccggatggtctgcctcataaaggaagcagagtccagtctcgtccacctatttcaagtaaaagatcgatggattcctaatgcaagccctgggtatgccaacaattctggctatattgtcgagaagtcccaacatctagcaagtacttcccgttctatttgcgaagatctcgtgggaatcgaagaaaacagagatacattgttcaattggatgagagaagatgggatggcatgctctacaatagttcttcatggcatgggaggccttggtaaaacagctctaactgcaaatgtgtacaagcatgaacaagaatattatgactgtcatgcatgggtatctgtttcacaaacatattcgctgatggagctcttaaaaaagctaagcgtccagctttttcatgaggaaaatattcagagtaatattggcagtatcgacataatcaatcttcaggagatacttaggagattccttgaagagaagaaatacttgatagtgttggacgatgtttggacaccagaagtaatcatcgatatgtcaagagctcttgctcagaattttaagggaagtagattgctgattactacacgtattggtaatgttgcagaattcgcatcggaaggacgtgtgctaacactagagggtttgtcagaaggaaagtcttgggaacttttttgtaagaaagctttccggagagaagcaaatcacgaatgtcccactgagctgaagaatttggcgacacaaatgttgaacaagtgtaaaggcttgcctcttgctattgtgtctgttggaagcctattgtccgtgcgtgagaagaatccaacagaatggagacgaatttatgaccaactcagttgggagctgaataacaacccaggcttagaccacgttaggaatattctgtacttaagcttcatatacctcccaacttatctgaagagttgtttcctgtattgtaccttgtttccagaggactatattcttcatcggaagatgcttttaaggttatggattgcagaggggttcattgaggaaaagggtgagaatacattcgaagatgtggcggaaggctatttaattgagctggttcacagaaatatgctgcagcttatggaatgcaactcatttggcagaataaaatcctgtaagatgcatgacattgttcgtgagttggcgattgacctgtctcagaaacaaagttttggtcttgcatactacgagtatggaaatcgttgtagtaccatggacacaagcatacgccgtctcgcggtagctaaatgcagcaataatattttatcaagtatatgcttacctcgtcttcgatcttgcattgtatttgataaggccatgccatccttgagaataattaagtcaatatcagacaagtcaaagtacattgttgtactagaactacgtgggctggcgattgaaaaagtgccagatgctgttggatgccttttcaacctacgctatttgggtttgcgccattcgaaggtgaagtttctccccaagtccgtggagaggctctccaacttattgacgttggatattttcaactcctacatacaagaactgcctcaaggaatagtcaagctgaagagtctgaggcacttacttgttgagagaatcaatgatccgtcatggagggattttagaagtcgccacggtgtttgcatcccaaagggtctttcgaatttcacaaatctgcagacattacatgcaattgaagcacaggaccggactgttaaagacttgggggagttgacacagctaaaaagcttaagggtgtggaatgtgaaggaaatccactgtgaacgcctctgcgtgtctatacttaagatgagatttttgtaccacattcatatagctgcatgtgacgagagtgaggttcaactgaataagctagatcccccaccgctaagccttcagaaactctgtttgagagggagattggcagaggggacacttgagtctcctcttttccaaactggtggacagaaattgcgtggactttttcttgtttggtctcagttgaaacaagatcccctcccgcctatctctcgattatgtaatctgacacagctgaatcttacaagagcatatgttggggaactgttaatattcaggagcggttggtttcccagtttgaagtttctgttactgcgggacttgcctaatctacatcggttagagattgaggaaggtgccgggataggtattcgtgttttgcagcttagacaccttgacaagctgatggatattccacctggcatcgagtttcttccatccctccaacgtctatgctttgtccatatcagtgaagatttccttgcattgctaaatcggtgttctaggctcaagcacattcagtggtggtattcaacgcatgatcagcctctgacgaagaaatctcaatcttga

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Protein seq

MAEAVILLVVKKIGAALGNEVINQASSLYRNLFAQLAELQGSMSRICRELRLMHEFLCRMDVRNRNDQAYEIWVDEVRKLAHGIEDIVDEYLHLVRQRHDKGWSFYLKKGINQPEALRSLNRMVCLIKEAESSLVHLFQVKDRWIPNASPGYANNSGYIVEKSQHLASTSRSICEDLVGIEENRDTLFNWMREDGMACSTIVLHGMGGLGKTALTANVYKHEQEYYDCHAWVSVSQTYSLMELLKKLSVQLFHEENIQSNIGSIDIINLQEILRRFLEEKKYLIVLDDVWTPEVIIDMSRALAQNFKGSRLLITTRIGNVAEFASEGRVLTLEGLSEGKSWELFCKKAFRREANHECPTELKNLATQMLNKCKGLPLAIVSVGSLLSVREKNPTEWRRIYDQLSWELNNNPGLDHVRNILYLSFIYLPTYLKSCFLYCTLFPEDYILHRKMLLRLWIAEGFIEEKGENTFEDVAEGYLIELVHRNMLQLMECNSFGRIKSCKMHDIVRELAIDLSQKQSFGLAYYEYGNRCSTMDTSIRRLAVAKCSNNILSSICLPRLRSCIVFDKAMPSLRIIKSISDKSKYIVVLELRGLAIEKVPDAVGCLFNLRYLGLRHSKVKFLPKSVERLSNLLTLDIFNSYIQELPQGIVKLKSLRHLLVERINDPSWRDFRSRHGVCIPKGLSNFTNLQTLHAIEAQDRTVKDLGELTQLKSLRVWNVKEIHCERLCVSILKMRFLYHIHIAACDESEVQLNKLDPPPLSLQKLCLRGRLAEGTLESPLFQTGGQKLRGLFLVWSQLKQDPLPPISRLCNLTQLNLTRAYVGELLIFRSGWFPSLKFLLLRDLPNLHRLEIEEGAGIGIRVLQLRHLDKLMDIPPGIEFLPSLQRLCFVHISEDFLALLNRCSRLKHIQWWYSTHDQPLTKKSQS

Function Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_10g0001820 OsKeNa_10g0001820.01 Chr10 2560589 2564320 - NAM
CDS seq

atggcagaagcagtgatacttttagttgtgaagaaaattggtgctgctctaggaaatgaagtaatcaaccaagcaagttcactgtacagaaacttgtttgcacagcttgcagaactccaaggcagcatgagccgcatatgtcgtgagcttaggttgatgcatgaatttctttgcagaatggacgtacgcaatcgaaatgatcaggcatatgaaatttgggtggatgaggtgcggaagctagcacatggaattgaggacatagtagatgagtatctacacttagtaaggcagagacatgacaaaggatggagcttttatctgaagaagggaatcaatcaacctgaagctttgcgttcattaaaccggatggtctgcctcataaaggaagcagagtccagtctcgtccacctatttcaagtaaaagatcgatggattcctaatgcaagccctgggtatgccaacaattctggctatattgtcgagaagtcccaacatctagcaagtacttcccgttctatttgcgaagatctcgtgggaatcgaagaaaacagagatacattgttcaattggatgagagaagatgggatggcatgctctacaatagttcttcatggcatgggaggccttggtaaaacagctctaactgcaaatgtgtacaagcatgaacaagaatattatgactgtcatgcatgggtatctgtttcacaaacatattcgctgatggagctcttaaaaaagctaagcgtccagctttttcatgaggaaaatattcagagtaatattggcagtatcgacataatcaatcttcaggagatacttaggagattccttgaagagaagaaatacttgatagtgttggacgatgtttggacaccagaagtaatcatcgatatgtcaagagctcttgctcagaattttaagggaagtagattgctgattactacacgtattggtaatgttgcagaattcgcatcggaaggacgtgtgctaacactagagggtttgtcagaaggaaagtcttgggaacttttttgtaagaaagctttccggagagaagcaaatcacgaatgtcccactgagctgaagaatttggcgacacaaatgttgaacaagtgtaaaggcttgcctcttgctattgtgtctgttggaagcctattgtccgtgcgtgagaagaatccaacagaatggagacgaatttatgaccaactcagttgggagctgaataacaacccaggcttagaccacgttaggaatattctgtacttaagcttcatatacctcccaacttatctgaagagttgtttcctgtattgtaccttgtttccagaggactatattcttcatcggaagatgcttttaaggttatggattgcagaggggttcattgaggaaaagggtgagaatacattcgaagatgtggcggaaggctatttaattgagctggttcacagaaatatgctgcagcttatggaatgcaactcatttggcagaataaaatcctgtaagatgcatgacattgttcgtgagttggcgattgacctgtctcagaaacaaagttttggtcttgcatactacgagtatggaaatcgttgtagtaccatggacacaagcatacgccgtctcgcggtagctaaatgcagcaataatattttatcaagtatatgcttacctcgtcttcgatcttgcattgtatttgataaggccatgccatccttgagaataattaagtcaatatcagacaagtcaaagtacattgttgtactagaactacgtgggctggcgattgaaaaagtgccagatgctgttggatgccttttcaacctacgctatttgggtttgcgccattcgaaggtgaagtttctccccaagtccgtggagaggctctccaacttattgacgttggatattttcaactcctacatacaagaactgcctcaaggaatagtcaagctgaagagtctgaggcacttacttgttgagagaatcaatgatccgtcatggagggattttagaagtcgccacggtgtttgcatcccaaagggtctttcgaatttcacaaatctgcagacattacatgcaattgaagcacaggaccggactgttaaagacttgggggagttgacacagctaaaaagcttaagggtgtggaatgtgaaggaaatccactgtgaacgcctctgcgtgtctatacttaagatgagatttttgtaccacattcatatagctgcatgtgacgagagtgaggttcaactgaataagctagatcccccaccgctaagccttcagaaactctgtttgagagggagattggcagaggggacacttgagtctcctcttttccaaactggtggacagaaattgcgtggactttttcttgtttggtctcagttgaaacaagatcccctcccgcctatctctcgattatgtaatctgacacagctgaatcttacaagagcatatgttggggaactgttaatattcaggagcggttggtttcccagtttgaagtttctgttactgcgggacttgcctaatctacatcggttagagattgaggaaggtgccgggataggtattcgtgttttgcagcttagacaccttgacaagctgatggatattccacctggcatcgagtttcttccatccctccaacgtctatgctttgtccatatcagtgaagatttccttgcattgctaaatcggtgttctaggctcaagcacattcagtggtggtattcaacgcatgatcagcctctgacgaagaaatctcaatcttga

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Protein seq

MAEAVILLVVKKIGAALGNEVINQASSLYRNLFAQLAELQGSMSRICRELRLMHEFLCRMDVRNRNDQAYEIWVDEVRKLAHGIEDIVDEYLHLVRQRHDKGWSFYLKKGINQPEALRSLNRMVCLIKEAESSLVHLFQVKDRWIPNASPGYANNSGYIVEKSQHLASTSRSICEDLVGIEENRDTLFNWMREDGMACSTIVLHGMGGLGKTALTANVYKHEQEYYDCHAWVSVSQTYSLMELLKKLSVQLFHEENIQSNIGSIDIINLQEILRRFLEEKKYLIVLDDVWTPEVIIDMSRALAQNFKGSRLLITTRIGNVAEFASEGRVLTLEGLSEGKSWELFCKKAFRREANHECPTELKNLATQMLNKCKGLPLAIVSVGSLLSVREKNPTEWRRIYDQLSWELNNNPGLDHVRNILYLSFIYLPTYLKSCFLYCTLFPEDYILHRKMLLRLWIAEGFIEEKGENTFEDVAEGYLIELVHRNMLQLMECNSFGRIKSCKMHDIVRELAIDLSQKQSFGLAYYEYGNRCSTMDTSIRRLAVAKCSNNILSSICLPRLRSCIVFDKAMPSLRIIKSISDKSKYIVVLELRGLAIEKVPDAVGCLFNLRYLGLRHSKVKFLPKSVERLSNLLTLDIFNSYIQELPQGIVKLKSLRHLLVERINDPSWRDFRSRHGVCIPKGLSNFTNLQTLHAIEAQDRTVKDLGELTQLKSLRVWNVKEIHCERLCVSILKMRFLYHIHIAACDESEVQLNKLDPPPLSLQKLCLRGRLAEGTLESPLFQTGGQKLRGLFLVWSQLKQDPLPPISRLCNLTQLNLTRAYVGELLIFRSGWFPSLKFLLLRDLPNLHRLEIEEGAGIGIRVLQLRHLDKLMDIPPGIEFLPSLQRLCFVHISEDFLALLNRCSRLKHIQWWYSTHDQPLTKKSQS

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_10g0001820 OsKeNa_10g0001820.02 Chr10 2560598 2565585 - IsoSeq
CDS seq

tatgtgtgggtgggttcctggatccggcgcagaggtgtgctggggcggccatcggctggcagccggctggatccagtgcgggtgggggctctgctcctaccgacatgcagcggcggcggcgaccgacgacggtggtgtctcccctctcccggcgttgccatcgacagcgaaagcagcgatctcttaaaatttgagagagtatttatccaagctaataattcagtgaatttacaaatcgagagtaatggcagaagcagtgatacttttagttgtgaagaaaattggtgctgctctagg

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Protein seq

YVWVGSWIRRRGVLGRPSAGSRLDPVRVGALLLPTCSGGGDRRRWCLPSPGVAIDSESSDLLKFERVFIQANNSVNLQIESNGRSSDTFSCEENWCCSR

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.037464 1.563843 1.518027

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0136100 RBH 0.438131 0.362949 1.680767
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g04674 RBH 0.295512 0.243475 0.443199
Nipponbare | IRGSP 1.0 | RAP-db Os10g0136100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0001850 RBH 0.293854 9.704144 2.968899
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0001800 RBH 0.138171 11.068842 4.079497
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0001790 RBH 0.0 0.119620 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0007840 SBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0033900 SBH 0.6370025 3.3276555 4.9562595
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0007800 SBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0038900 SBH 0.015219 1.538173 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0007530 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0003460 SBH 0.337359 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0008010 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0007490 SBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0008100 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G007740 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0001740 RBH 0.232457 8.996502 1.655302
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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