Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_10g0003410 | OGI:10013980 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr10:4696666-4699408 | ||||||||
| Gene Symbol | RLR1, OsRLR1 | ||||||||||
| DNA seq | atggcggaagctgcagtagtccaggccctcattaagattggatctgcttttggagaaacagcactgccattactccaagacttcataaagaaagaagcagctctgttacaggaactaccagagctcgcaaaatgcattcggggggaattggacatgattagtagcttccttctgcaagtgcggtcgaagatccacagcaccgacaatgaagttctgaaacgctgggtggtgagagtacgccaggtggcctaccatgtcgaggacataatagatgagtacaCccacaatgttgctctgttgcaggaccaaagttatttgattagaaagatgcgtgaggcctacaatgtcacaactttccatgccattgctactggactgaaagatgtaagtaatgagatcaagcagttgtcagaaatgaagacaaaatatgcagaatacttcggtgagttacttagcaacactagtgctaatactcaagctcatctctcccgtgatggctccctccatacggttaaagaaggcattgtaggcatgacagtagagatggatttactgaattcatggttagcacccaatgatctcagtagagtagtgttatctgtgtggggtctgtttggattggggaaaacaactcttgtcaggaaggtgtatcaatccatgaaagagcagaagagctttgactgttattcctggattgaggtaccacacacatacaacaacgatgttatattaaggcagttaataagggacctgtctgaagaccaaagtcaagtacctggcagccttgaaagtatgtatggcagtaagctggttgacatattatccggagtgttgacaaacaagaggtatttgattgtgctcgataatgtctgggatgcagctgcatttcatggcatatcaagtttcttgatggacagcggtaatgctagtcgaataatcatcacgactaggacaagtgatgttgcttcactggctcaagaaacatacaagctcaagcttaagcccttggaggatgacgatgcaatggaactattttgcagaagggcttttcataatagcaacaaggtatgcccgcctcaccttgaggatctgtgtaaacagattgtgaggaagtgtggtggcttaccatcagccatctatgccataggcaatgtgcttgcagtcagagaaaCGGAAGTGGCTTGGAAAATAATGAATGATCAGTTCCAGTGTATGTTGGAGGACAACCCTGGCTTGGGAGAAGTGAGGAGTGCCCTGAGCGTTAGCATTtttgttccttccaaggcatctcaagaactgcttcctctactgcagcctgttcccacagaactaccggttgtcacgtgaaagccttgtgaagctgtggacagcagaaggattcataacgaagagaggaagcagcactctggaagaagttgcagatgaatacctgatggagctgatccgaggaagcttgttgcaactcctggagacagatgaaattggcagagtagccttctgcaagatgcatgacattgtgcgtgacttggctctgtcctactccagaaaggagatgtttggcctgagtgATggagacctccaaacagatcaaaaggaagatgttcgtcgcctgtcaatatccaagtgcaacaagaatgtgggatcaatcttggagtttcctcgccttcggaccttcatcactaccaatggaggcgcagagtcagacctgttacattctctcatacaaaaatcgaagtaccttgctgttctggagctgcaagactcacccatcgacataattccagcaaatattggagagctgttCaacctgcactatcttggattgcggaggaccaatgtgaaatcacttccaaaatctatcgagaaacttaccaatctggagaCTctggacctgaaatacaccggggtagatgtgctgcccaaggagatctgtaaactgaagaagctgaggcacttgttcgccgagaaactcattgaccgtaatcgccaagtgttcagatacttcaaaggtatgcagctgccacatggattttCAcacatgaatgaaattcaaacccttgaaacagttgaggcaacgaaggactccattgagctgctggggaagctgactgcactgagaaccctgtgggttgagaatgtgcatcgcgctgactgcacaaagttgtttgattcattgtcagaaatggagaatctctcaagcctgctcgttagtgccagcgatgaatatgaggtccttaactttgatgcattcagtccttctgagatgaagctccagaagctcatcattagaggctgcctcgagaatgatacatttgacaagcttatgttcaaaaaccttggctcacacatcaaatacttgtcactaagttcctcgagactcggcaatgatccgttcccgctcctcgcaaagaacatgaagaacctcatctacctgagcatcaggaagtggtgctgtgctgaggaggtggctctccgtgaaGggtggttccctcgcctgacaacactcttccttggtgacatgaagcaggtgcacactattgtcatcgagccgtcagcggttgagagcttggaggcgctgtacttggtttctctgacggctatgacaGcggttccgacaggcttggagctcgttgggtcgctcaggaagctcgttgtgtgggggcagtcagacgatttcaagctggagtggaagagggagaactgggaaacgaagctgcgccatattccggaaattcgcatttaa
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| CDS seq | atggcggaagctgcagtagtccaggccctcattaagattggatctgcttttggagaaacagcactgccattactccaagacttcataaagaaagaagcagctctgttacaggaactaccagagctcgcaaaatgcattcggggggaattggacatgattagtagcttccttctgcaagtgcggtcgaagatccacagcaccgacaatgaagttctgaaacgctgggtggtgagagtacgccaggtggcctaccatgtcgaggacataatagatgagtacaCccacaatgttgctctgttgcaggaccaaagttatttgattagaaagatgcgtgaggcctacaatgtcacaactttccatgccattgctactggactgaaagatgtaagtaatgagatcaagcagttgtcagaaatgaagacaaaatatgcagaatacttcggtgagttacttagcaacactagtgctaatactcaagctcatctctcccgtgatggctccctccatacggttaaagaaggcattgtaggcatgacagtagagatggatttactgaattcatggttagcacccaatgatctcagtagagtagtgttatctgtgtggggtctgtttggattggggaaaacaactcttgtcaggaaggtgtatcaatccatgaaagagcagaagagctttgactgttattcctggattgaggtaccacacacatacaacaacgatgttatattaaggcagttaataagggacctgtctgaagaccaaagtcaagtacctggcagccttgaaagtatgtatggcagtaagctggttgacatattatccggagtgttgacaaacaagaggtatttgattgtgctcgataatgtctgggatgcagctgcatttcatggcatatcaagtttcttgatggacagcggtaatgctagtcgaataatcatcacgactaggacaagtgatgttgcttcactggctcaagaaacatacaagctcaagcttaagcccttggaggatgacgatgcaatggaactattttgcagaagggcttttcataatagcaacaaggtatgcccgcctcaccttgaggatctgtgtaaacagattgtgaggaagtgtggtggcttaccatcagccatctatgccataggcaatgtgcttgcagtcagagaaaCGGAAGTGGCTTGGAAAATAATGAATGATCAGTTCCAGTGTATGTTGGAGGACAACCCTGGCTTGGGAGAAaactaccggttgtcacgtgaaagccttgtgaagctgtggacagcagaaggattcataacgaagagaggaagcagcactctggaagaagttgcagatgaatacctgatggagctgatccgaggaagcttgttgcaactcctggagacagatgaaattggcagagtagccttctgcaagatgcatgacattgtgcgtgacttggctctgtcctactccagaaaggagatgtttggcctgagtgATggagacctccaaacagatcaaaaggaagatgttcgtcgcctgtcaatatccaagtgcaacaagaatgtgggatcaatcttggagtttcctcgccttcggaccttcatcactaccaatggaggcgcagagtcagacctgttacattctctcatacaaaaatcgaagtaccttgctgttctggagctgcaagactcacccatcgacataattccagcaaatattggagagctgttCaacctgcactatcttggattgcggaggaccaatgtgaaatcacttccaaaatctatcgagaaacttaccaatctggagaCTctggacctgaaatacaccggggtagatgtgctgcccaaggagatctgtaaactgaagaagctgaggcacttgttcgccgagaaactcattgaccgtaatcgccaagtgttcagatacttcaaaggtatgcagctgccacatggattttCAcacatgaatgaaattcaaacccttgaaacagttgaggcaacgaaggactccattgagctgctggggaagctgactgcactgagaaccctgtgggttgagaatgtgcatcgcgctgactgcacaaagttgtttgattcattgtcagaaatggagaatctctcaagcctgctcgttagtgccagcgatgaatatgaggtccttaactttgatgcattcagtccttctgagatgaagctccagaagctcatcattagaggctgcctcgagaatgatacatttgacaagcttatgttcaaaaaccttggctcacacatcaaatacttgtcactaagttcctcgagactcggcaatgatccgttcccgctcctcgcaaagaacatgaagaacctcatctacctgagcatcaggaagtggtgctgtgctgaggaggtggctctccgtgaaGggtggttccctcgcctgacaacactcttccttggtgacatgaagcaggtgcacactattgtcatcgagccgtcagcggttgagagcttggaggcgctgtacttggtttctctgacggctatgacaGcggttccgacaggcttggagctcgttgggtcgctcaggaagctcgttgtgtgggggcagtcagacgatttcaagctggagtggaagagggagaactgggaaacgaagctgcgccatattccggaaattcgcatttaa
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| Protein seq | MAEAAVVQALIKIGSAFGETALPLLQDFIKKEAALLQELPELAKCIRGELDMISSFLLQVRSKIHSTDNEVLKRWVVRVRQVAYHVEDIIDEYTHNVALLQDQSYLIRKMREAYNVTTFHAIATGLKDVSNEIKQLSEMKTKYAEYFGELLSNTSANTQAHLSRDGSLHTVKEGIVGMTVEMDLLNSWLAPNDLSRVVLSVWGLFGLGKTTLVRKVYQSMKEQKSFDCYSWIEVPHTYNNDVILRQLIRDLSEDQSQVPGSLESMYGSKLVDILSGVLTNKRYLIVLDNVWDAAAFHGISSFLMDSGNASRIIITTRTSDVASLAQETYKLKLKPLEDDDAMELFCRRAFHNSNKVCPPHLEDLCKQIVRKCGGLPSAIYAIGNVLAVRETEVAWKIMNDQFQCMLEDNPGLGENYRLSRESLVKLWTAEGFITKRGSSTLEEVADEYLMELIRGSLLQLLETDEIGRVAFCKMHDIVRDLALSYSRKEMFGLSDGDLQTDQKEDVRRLSISKCNKNVGSILEFPRLRTFITTNGGAESDLLHSLIQKSKYLAVLELQDSPIDIIPANIGELFNLHYLGLRRTNVKSLPKSIEKLTNLETLDLKYTGVDVLPKEICKLKKLRHLFAEKLIDRNRQVFRYFKGMQLPHGFSHMNEIQTLETVEATKDSIELLGKLTALRTLWVENVHRADCTKLFDSLSEMENLSSLLVSASDEYEVLNFDAFSPSEMKLQKLIIRGCLENDTFDKLMFKNLGSHIKYLSLSSSRLGNDPFPLLAKNMKNLIYLSIRKWCCAEEVALREGWFPRLTTLFLGDMKQVHTIVIEPSAVESLEALYLVSLTAMTAVPTGLELVGSLRKLVVWGQSDDFKLEWKRENWETKLRHIPEIRI |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0003410 | OsPr106_10g0003410.01 | Chr10 | 4696666 | 4699408 | + | NAM | ||
| CDS seq | atggcggaagctgcagtagtccaggccctcattaagattggatctgcttttggagaaacagcactgccattactccaagacttcataaagaaagaagcagctctgttacaggaactaccagagctcgcaaaatgcattcggggggaattggacatgattagtagcttccttctgcaagtgcggtcgaagatccacagcaccgacaatgaagttctgaaacgctgggtggtgagagtacgccaggtggcctaccatgtcgaggacataatagatgagtacaCccacaatgttgctctgttgcaggaccaaagttatttgattagaaagatgcgtgaggcctacaatgtcacaactttccatgccattgctactggactgaaagatgtaagtaatgagatcaagcagttgtcagaaatgaagacaaaatatgcagaatacttcggtgagttacttagcaacactagtgctaatactcaagctcatctctcccgtgatggctccctccatacggttaaagaaggcattgtaggcatgacagtagagatggatttactgaattcatggttagcacccaatgatctcagtagagtagtgttatctgtgtggggtctgtttggattggggaaaacaactcttgtcaggaaggtgtatcaatccatgaaagagcagaagagctttgactgttattcctggattgaggtaccacacacatacaacaacgatgttatattaaggcagttaataagggacctgtctgaagaccaaagtcaagtacctggcagccttgaaagtatgtatggcagtaagctggttgacatattatccggagtgttgacaaacaagaggtatttgattgtgctcgataatgtctgggatgcagctgcatttcatggcatatcaagtttcttgatggacagcggtaatgctagtcgaataatcatcacgactaggacaagtgatgttgcttcactggctcaagaaacatacaagctcaagcttaagcccttggaggatgacgatgcaatggaactattttgcagaagggcttttcataatagcaacaaggtatgcccgcctcaccttgaggatctgtgtaaacagattgtgaggaagtgtggtggcttaccatcagccatctatgccataggcaatgtgcttgcagtcagagaaaCGGAAGTGGCTTGGAAAATAATGAATGATCAGTTCCAGTGTATGTTGGAGGACAACCCTGGCTTGGGAGAAaactaccggttgtcacgtgaaagccttgtgaagctgtggacagcagaaggattcataacgaagagaggaagcagcactctggaagaagttgcagatgaatacctgatggagctgatccgaggaagcttgttgcaactcctggagacagatgaaattggcagagtagccttctgcaagatgcatgacattgtgcgtgacttggctctgtcctactccagaaaggagatgtttggcctgagtgATggagacctccaaacagatcaaaaggaagatgttcgtcgcctgtcaatatccaagtgcaacaagaatgtgggatcaatcttggagtttcctcgccttcggaccttcatcactaccaatggaggcgcagagtcagacctgttacattctctcatacaaaaatcgaagtaccttgctgttctggagctgcaagactcacccatcgacataattccagcaaatattggagagctgttCaacctgcactatcttggattgcggaggaccaatgtgaaatcacttccaaaatctatcgagaaacttaccaatctggagaCTctggacctgaaatacaccggggtagatgtgctgcccaaggagatctgtaaactgaagaagctgaggcacttgttcgccgagaaactcattgaccgtaatcgccaagtgttcagatacttcaaaggtatgcagctgccacatggattttCAcacatgaatgaaattcaaacccttgaaacagttgaggcaacgaaggactccattgagctgctggggaagctgactgcactgagaaccctgtgggttgagaatgtgcatcgcgctgactgcacaaagttgtttgattcattgtcagaaatggagaatctctcaagcctgctcgttagtgccagcgatgaatatgaggtccttaactttgatgcattcagtccttctgagatgaagctccagaagctcatcattagaggctgcctcgagaatgatacatttgacaagcttatgttcaaaaaccttggctcacacatcaaatacttgtcactaagttcctcgagactcggcaatgatccgttcccgctcctcgcaaagaacatgaagaacctcatctacctgagcatcaggaagtggtgctgtgctgaggaggtggctctccgtgaaGggtggttccctcgcctgacaacactcttccttggtgacatgaagcaggtgcacactattgtcatcgagccgtcagcggttgagagcttggaggcgctgtacttggtttctctgacggctatgacaGcggttccgacaggcttggagctcgttgggtcgctcaggaagctcgttgtgtgggggcagtcagacgatttcaagctggagtggaagagggagaactgggaaacgaagctgcgccatattccggaaattcgcatttaa
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| Protein seq | MAEAAVVQALIKIGSAFGETALPLLQDFIKKEAALLQELPELAKCIRGELDMISSFLLQVRSKIHSTDNEVLKRWVVRVRQVAYHVEDIIDEYTHNVALLQDQSYLIRKMREAYNVTTFHAIATGLKDVSNEIKQLSEMKTKYAEYFGELLSNTSANTQAHLSRDGSLHTVKEGIVGMTVEMDLLNSWLAPNDLSRVVLSVWGLFGLGKTTLVRKVYQSMKEQKSFDCYSWIEVPHTYNNDVILRQLIRDLSEDQSQVPGSLESMYGSKLVDILSGVLTNKRYLIVLDNVWDAAAFHGISSFLMDSGNASRIIITTRTSDVASLAQETYKLKLKPLEDDDAMELFCRRAFHNSNKVCPPHLEDLCKQIVRKCGGLPSAIYAIGNVLAVRETEVAWKIMNDQFQCMLEDNPGLGENYRLSRESLVKLWTAEGFITKRGSSTLEEVADEYLMELIRGSLLQLLETDEIGRVAFCKMHDIVRDLALSYSRKEMFGLSDGDLQTDQKEDVRRLSISKCNKNVGSILEFPRLRTFITTNGGAESDLLHSLIQKSKYLAVLELQDSPIDIIPANIGELFNLHYLGLRRTNVKSLPKSIEKLTNLETLDLKYTGVDVLPKEICKLKKLRHLFAEKLIDRNRQVFRYFKGMQLPHGFSHMNEIQTLETVEATKDSIELLGKLTALRTLWVENVHRADCTKLFDSLSEMENLSSLLVSASDEYEVLNFDAFSPSEMKLQKLIIRGCLENDTFDKLMFKNLGSHIKYLSLSSSRLGNDPFPLLAKNMKNLIYLSIRKWCCAEEVALREGWFPRLTTLFLGDMKQVHTIVIEPSAVESLEALYLVSLTAMTAVPTGLELVGSLRKLVVWGQSDDFKLEWKRENWETKLRHIPEIRI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.861666 | 7.657732 | 1.572157 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0136100 | RBH | 0.438131 | 0.362949 | 1.680767 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07534 | SBH | 0.406626 | 0.191144 | 0.256913 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0136100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003490 | RBH | 0.181332 | 7.511462 | 2.116060 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003450 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003370 | RBH | 0.143637 | 3.407141 | 2.077759 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003680 | RBH | 0.0 | 0.034885 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0067700 | RBH | 3.6187615 | 33.88155 | 3.075858 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003590 | RBH | 0.060442 | 1.117661 | 0.482528 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0075100 | RBH | 2.186606 | 15.853632 | 7.957001 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003430 | RBH | 0.208589 | 0.210422 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003460 | RBH | 0.337359 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003590 | RBH | 1.606913 | 10.667983 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003360 | RBH | 0.162011 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003670 | RBH | 0.152734 | 5.336367 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003500 | RBH | 0.057116 | 0.322945 | 0.822270 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003640 | RBH | 0.755058 | 30.940893 | 1.257875 |
