Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0532800 | OGI:09061370 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:20905466-20908479 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGCCCACGCCATCACGGCCTCGCCGATGCTCCCGTCGCCACCGGCGCCGCCGCCGATCTCGCCGGCGCGGCTGCACAAGCTCGTGACCTCCCAGTCGGACCCGCTCCTCGCGCTCGAGCTAGTCACCGTCACCGCGCCGACCACCGCGCCCCACCCGTCGACGCTCCACGCGCTCGCGCTCCGCCTCTCCCGCCGCCGCGAACACCTCCCCCACGCGCTCGCGCTCCTGCGCCGCCTCCCGTCGCCGCCCTCCCCGCGGATCCTCCTCCCGCTGCTCCTCTCCGCGCTCCGCCTCCGCCGGCAGCCTCACCTCTTCCTCTCCACCTTCAACTCCCTCTTCGTCTCCGGCCCCAGCCCGTTGCCGCTCCACCCCGAGCTTCTCCTCCGCCTCCTCTCCGTTCTCTCCTCCACCGCTTCCTACTTCCCGTGCGCGCTACACCTCCTCCGCGACGTCTCCACCCGCCTTCCCCTCCCCGAGCCGCTCGTCCTCGCCTCGCACAACCTGCTCATCGAAGCCGCCACCCGCTCCGGCCACCTCGCCGTGTCAATCTCCCTCTTCCATCGCCTCCGCTCCCTCCATGTGTCTCCCAACGCCGAGACATACCGCATCCTGACCCAGTCACTCTGCCGCAGGGGCCAGGTCCACACTGCGGCCACCCTGCTCGACGAAATGCTCCACAGGGGCATCCCTGCTGACCCACTGGCATACACCACCGTGCTGAATGCGCTCTGCCGTAAGAAGCAGCTTCGAGAGGCTTACCGCTTGCTGTGCCTCATGCGAGGCCGTGGGGTCTCACCTGACATTGTACATTACAACACGGTCATCGTCGGAGTGTGTCGTGAGGGACGGCCACTGGATGCCTGCAAGGTGTTCGGAGATATGAGGGAGAGTGGGTGCGCGCCAAATGCGGTGACATATACTGCGGTGGTGAATGGGTTGTGTGTGAATGGATTATATGACAAGGCAGAGGCATACCTTGATGATATGTTGGGCAAAGGGTTACTACCACATTTCTCTGTGTTACATTCAGTGATTAAGGGATGCTGTGCAGTTGGGAAGGTTAATGAGGCTGCAGGGATGATGACTCGAATGCTTGATCTTGGGATGGTTCCACATGCTGAGACCTGGAGTTCAGTGATCAGGAGTGTTTGTAGTGATGAGGATAATGTCGAGGTGGTTTTGTTGCAAGTGATGAAAGGAATAAAGCACCGCTCAAACATAAATTCAAGGAGTACCTGGACATGATATCATGTGGCATGGATGCAAGGAACACCTATTTTCTGGTGTGTTGTAACAATCAGTTTTGAAAGAAAACAGTAGATGATGTGCAAAATGTGGACCGCAACCATTTTTCTCATCGTATGCAGCTAATTTGATATTTGAGTTTATTTGTTTATATGCAGGTTAGGAGATATTGTTTGACTTCAACTAAGGTACACTATCCTGTTTCAAGAAAAAAAAAAGCTATTGCCCTTAATTAAGCATGTAGCGCTATTGATATTGAGTTCTAGCACTGTTTTGGTAGTACATTTTGTATGTAGATTCTGAATTTCTGATGCTTGTTAGTTAAAACCATACTCTGTTCTAGTAGTAATTTTCAAATACATTTACTCTGAATCGAGTAGATCATTTACTTTTTCTTATGCCTCTTCAATTGTGCTTTCCTGTAGCTGCAACGGCAGCACCCAGATTCTGCATTCGCAGATCTTATAATCTGCCAAAGCCCAAAGCTTTGATGCCAGGATTCGTGGTTTTGTAGAAATGTGCAGTAAAAACCGAAGTCGTGGTTTTTTCGGCTGCCGAATCAAAGCGTAAGCTGTGGATTGGTTGTAGTGCGGGATGGTACTTTCTGGTTCTGCTGATTCAGAAAAGTGAAACATATGGTTTGCCTTAAAATAGACGCTAGTAAATGGAAAGAACAACTGCCTTTCAGTCCCAACTTCTTGAGGAGACCTGCACCTTTACTTATGTGGTATGTGTCAGATCATGAAGGTTTTAATTGGAAGGGATGAGATCGAGGTGTGTTTTATCAAGTTATGCTGTGGAAATGGGTATTAGAATCTGGTGTTAACATTCATATACAAGTAACATCGTGCGAAATTATACTGTAATCTGTATTATGTAGTGCAAGAATCGCAAGTAATCACACTGGCAGTTGGCTTTAACATTAGCCTTTTTATCCTTTGCAGGTTACTCAGACACGATGCTGGAACTGCTACTTTTTGCTTTGGAAGATCTTAAGATGGTTTTGAAGTCTCAGGAGTCTGATCTTCTCATAGGCTTGGGAAATGCTGAAGATGTTGTTCTCAAGCTTGTAAATGAGGTCACTATGCAAGGTTTATGTTGAGAATTGAGCTTAAGAGTTTATGCAAACCTTCACTGCTAGCCATCTAACATATCCAGATCTCCTGATTGCATGCATTGATGGAGCATAACAGGTACAAGCGGGCCTCATTTTCACAGAAGAGGAAGTTGAGTACAGAGTGCGCAATGTTCTGGCCAGTGTTGAATCATCTCTCTCTAATGCATCATACCTATCGGGAAACCCTCCTGAGATAGTGGTTTGGAGTGCCTCATTGTATGACTACAAGGTAATTTTTTATCTCAGGTTATCATTCCCTATTGCTATCCTCTAGCAACCTAATTATGTTTGGCATGCTAAAATCATTCCACCAGAATCCGAGGGAATTGTCAACATCACACAACCAATTTTTGAAGGAAAAATTACCGATGAACACACCTCTTGCTGCCCCGTCTTTACCTGCTCTGAACATAGAGATAGAGACAGGTGTATTTCAGTTCTCTTTTTTTTTTTGGTTAGTGATTATATCCTTGATCATTTTTGGTGTGTGCATTGTGATACTTGTGGGCTACTAGCTAATATGTTCAGGTATTTTACTTTTCTTTTTTCCTTCTTGTAGTATAGCGAAGGCAACCGAATATATTTTTTTTTTCAAAAATGTATTTCACTTTTCTTTGAATCAAATCAATCCATCTCTTTTCCTTGTGATC
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| CDS seq | ATGCTCCCGTCGCCACCGGCGCCGCCGCCGATCTCGCCGGCGCGGCTGCACAAGCTCGTGACCTCCCAGTCGGACCCGCTCCTCGCGCTCGAGCTAGTCACCGTCACCGCGCCGACCACCGCGCCCCACCCGTCGACGCTCCACGCGCTCGCGCTCCGCCTCTCCCGCCGCCGCGAACACCTCCCCCACGCGCTCGCGCTCCTGCGCCGCCTCCCGTCGCCGCCCTCCCCGCGGATCCTCCTCCCGCTGCTCCTCTCCGCGCTCCGCCTCCGCCGGCAGCCTCACCTCTTCCTCTCCACCTTCAACTCCCTCTTCGTCTCCGGCCCCAGCCCGTTGCCGCTCCACCCCGAGCTTCTCCTCCGCCTCCTCTCCGTTCTCTCCTCCACCGCTTCCTACTTCCCGTGCGCGCTACACCTCCTCCGCGACGTCTCCACCCGCCTTCCCCTCCCCGAGCCGCTCGTCCTCGCCTCGCACAACCTGCTCATCGAAGCCGCCACCCGCTCCGGCCACCTCGCCGTGTCAATCTCCCTCTTCCATCGCCTCCGCTCCCTCCATGTGTCTCCCAACGCCGAGACATACCGCATCCTGACCCAGTCACTCTGCCGCAGGGGCCAGGTCCACACTGCGGCCACCCTGCTCGACGAAATGCTCCACAGGGGCATCCCTGCTGACCCACTGGCATACACCACCGTGCTGAATGCGCTCTGCCGTAAGAAGCAGCTTCGAGAGGCTTACCGCTTGCTGTGCCTCATGCGAGGCCGTGGGGTCTCACCTGACATTGTACATTACAACACGGTCATCGTCGGAGTGTGTCGTGAGGGACGGCCACTGGATGCCTGCAAGGTGTTCGGAGATATGAGGGAGAGTGGGTGCGCGCCAAATGCGGTGACATATACTGCGGTGGTGAATGGGTTGTGTGTGAATGGATTATATGACAAGGCAGAGGCATACCTTGATGATATGTTGGGCAAAGGGTTACTACCACATTTCTCTGTGTTACATTCAGTGATTAAGGGATGCTGTGCAGTTGGGAAGGTTAATGAGGCTGCAGGGATGATGACTCGAATGCTTGATCTTGGGATGGTTCCACATGCTGAGACCTGGAGTTCAGTGATCAGGAGTGTTTGTAGTGATGAGGATAATGTCGAGGTGGTTTTGTTGCAAGTGATGAAAGGAATAAAGCACCGCTCAAACATAAATTCAAGGAGTACCTGGACATGA
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| Protein seq | MLPSPPAPPPISPARLHKLVTSQSDPLLALELVTVTAPTTAPHPSTLHALALRLSRRREHLPHALALLRRLPSPPSPRILLPLLLSALRLRRQPHLFLSTFNSLFVSGPSPLPLHPELLLRLLSVLSSTASYFPCALHLLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRLRSLHVSPNAETYRILTQSLCRRGQVHTAATLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGVCREGRPLDACKVFGDMRESGCAPNAVTYTAVVNGLCVNGLYDKAEAYLDDMLGKGLLPHFSVLHSVIKGCCAVGKVNEAAGMMTRMLDLGMVPHAETWSSVIRSVCSDEDNVEVVLLQVMKGIKHRSNINSRSTWT |
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| Function | Pentatricopeptide repeat-containing protein At4g01400, mitochondrial [UniProtKB/Swiss-Prot:Q8LDU5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0532800 | OsNip_09t0532800-01 | Chr09 | 20905466 | 20908479 | + | RAP2018-11-26 | ||
| CDS seq | ATGCTCCCGTCGCCACCGGCGCCGCCGCCGATCTCGCCGGCGCGGCTGCACAAGCTCGTGACCTCCCAGTCGGACCCGCTCCTCGCGCTCGAGCTAGTCACCGTCACCGCGCCGACCACCGCGCCCCACCCGTCGACGCTCCACGCGCTCGCGCTCCGCCTCTCCCGCCGCCGCGAACACCTCCCCCACGCGCTCGCGCTCCTGCGCCGCCTCCCGTCGCCGCCCTCCCCGCGGATCCTCCTCCCGCTGCTCCTCTCCGCGCTCCGCCTCCGCCGGCAGCCTCACCTCTTCCTCTCCACCTTCAACTCCCTCTTCGTCTCCGGCCCCAGCCCGTTGCCGCTCCACCCCGAGCTTCTCCTCCGCCTCCTCTCCGTTCTCTCCTCCACCGCTTCCTACTTCCCGTGCGCGCTACACCTCCTCCGCGACGTCTCCACCCGCCTTCCCCTCCCCGAGCCGCTCGTCCTCGCCTCGCACAACCTGCTCATCGAAGCCGCCACCCGCTCCGGCCACCTCGCCGTGTCAATCTCCCTCTTCCATCGCCTCCGCTCCCTCCATGTGTCTCCCAACGCCGAGACATACCGCATCCTGACCCAGTCACTCTGCCGCAGGGGCCAGGTCCACACTGCGGCCACCCTGCTCGACGAAATGCTCCACAGGGGCATCCCTGCTGACCCACTGGCATACACCACCGTGCTGAATGCGCTCTGCCGTAAGAAGCAGCTTCGAGAGGCTTACCGCTTGCTGTGCCTCATGCGAGGCCGTGGGGTCTCACCTGACATTGTACATTACAACACGGTCATCGTCGGAGTGTGTCGTGAGGGACGGCCACTGGATGCCTGCAAGGTGTTCGGAGATATGAGGGAGAGTGGGTGCGCGCCAAATGCGGTGACATATACTGCGGTGGTGAATGGGTTGTGTGTGAATGGATTATATGACAAGGCAGAGGCATACCTTGATGATATGTTGGGCAAAGGGTTACTACCACATTTCTCTGTGTTACATTCAGTGATTAAGGGATGCTGTGCAGTTGGGAAGGTTAATGAGGCTGCAGGGATGATGACTCGAATGCTTGATCTTGGGATGGTTCCACATGCTGAGACCTGGAGTTCAGTGATCAGGAGTGTTTGTAGTGATGAGGATAATGTCGAGGTGGTTTTGTTGCAAGTGATGAAAGGAATAAAGCACCGCTCAAACATAAATTCAAGGAGTACCTGGACATGA
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| Protein seq | MLPSPPAPPPISPARLHKLVTSQSDPLLALELVTVTAPTTAPHPSTLHALALRLSRRREHLPHALALLRRLPSPPSPRILLPLLLSALRLRRQPHLFLSTFNSLFVSGPSPLPLHPELLLRLLSVLSSTASYFPCALHLLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRLRSLHVSPNAETYRILTQSLCRRGQVHTAATLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGVCREGRPLDACKVFGDMRESGCAPNAVTYTAVVNGLCVNGLYDKAEAYLDDMLGKGLLPHFSVLHSVIKGCCAVGKVNEAAGMMTRMLDLGMVPHAETWSSVIRSVCSDEDNVEVVLLQVMKGIKHRSNINSRSTWT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.108210 | 0.662503 | 0.211078 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0532500 | RBH | 1.345766 | 0.518014 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36230 | RBH | 0.972840 | 0.455668 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0532800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017560 | RBH | 0.000000 | 0.0 | 1.166371 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017610 | RBH | 0.087690 | 0.367034 | 0.653327 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017840 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0017620 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017760 | RBH | 0.428946 | 7.669281 | 4.833662 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0350200 | SBH | 10.3789475 | 3.431774 | 3.00867 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017600 | RBH | 0.107269 | 0.0 | 0.237876 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0338600 | RBH | 0.971669 | 2.698415 | 3.126566 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017650 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017430 | RBH | 0.327116 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017460 | RBH | 1.308016 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017380 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017520 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017900 | RBH | 0.083014 | 0.281074 | 0.114024 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017740 | RBH | 4.034605 | 3.038103 | 3.714351 |
