Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g36230 | OGI:09061370 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:20894912-20896719 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCTCCCGTCGCCACCGGCGCCGCCGCCGATCTCGCCGGCGCGGCTGCACAAGCTCGTGACCTCCCAGCCGGACCCGCTCCTCGCGCTCGAGCTCGTCACCGTCACCGCGCCGACCACCGCGCCCCACCCGTCGACGCTCCACGCGCTCGCGCTCCGCCTCTCCCGCCGCCGCGAACACCTCCCCCACGCGCTCGCGCTCCTGCGCCGCCTCCCGTCGCCGCCCTCCCCGCGGATCCTCCTCCCGCTGCTCCTCTCCGCGCTCCGCCTCCGCCGGCAGCCTCACCTCTTCCTCTCCACCTTCAACTCCCTCTTCGTCTCCGGCTCCAGCCCGTTGCCGCTCCACCCCGAGCTTCTCCTCCGCCTCCTCTCCGTTCTCTCTTCCACCGCTTCCTACTTCCCGTGCGCGCTGCACCTCCTCCGCGACGTCTCCACCCGCCTTCCCCTCCCCGAGCCGCTCGTCCTCGCCTCGCACAACCTGCTCATCGAAGCCGCCGCCCGCTCCGGCCACCTCGCCGTGTCAATCTCCCTCTTCCATCGCCTCCGCTCCCTCCATGTGTCTCCCAACGCCGAGACATACCGCATCCTGACCCAGTCACTATGCCGCAGGGGCCAGGTCCGCACTGCAGCCAACCTGCTCGACGAAATGCTCCACAGGGGCATCCCTGCTGACCCACTGGCATACACCACCGTGCTGAACGCGCTCTGCCGTAAGAAGCAGCTTCGAGAGGCTTACCGCTTGCTGTGCCTCATGCGAGGCCGTGAGGTCTCACCTGACATTGTACATTACAACACGGTCATCGTCGGAATGTGCCGTGAGGGACGGCCACTGGATGCCTGCAAGGTGTTCAGAGATATGAGGGAGAGTGGGTGCGCGCCAAATGCGGTGGCATATACTGCGGTGGTCAATAGGTTGTGTGTGAGTGGATTATATGACAAGGCAGAGGCATACCTTGATGATATGTTGGGCAAAGGGTTACTACCACATTTCTCTGTGTTCCATTCAGTGATTAAGGGATGCTGTGCAGTTGGGAAGGTCAATGAGGCTGCAGGGATGATGACTCGAATGCTTGATCTTGGAATGGTTCCACATGCTGAGACCTGGAGTTCAGTGATCAGGAGTGTTTGTAGTGATGAGGATAATGTCGAGGTGGTTTTGTTGCAAGTGATGAAAGGAATAAAGCACCTCTCAAACATAAATTCAAGGAGTACTTGGACATGATATCATGTGGCATGGATGCAAGGAACACCTATTTTATGGTGTGTTGTAACAATCAGTTTTGAAAGGAAACAGTAGATGATGTGCAAAATGTGGACCACAACCATTTTTCTCATCGTATGCAGCTAATTTGATATTTGAGTTTATTTGTTTATATGCAGGTTAGGAGATATTGTCTGACTTCAACTAAGGTATGCTATCCTATTGCAAGAAAAAAAAAGTTATCGCCCTTAATTAATGTGATTCATATGATTGTTTTGGTAGTACATTTTGAAGGTTGATTCTGAATTTCTGATGCTTGTTAGTTAAAGACCATACTTTGTTCTACTCTGAATCCAGTTGATCATTTATACTTTTTCTTATGCCTCTTCAATTGTGTGCATTCGCAGATCTTATAATCTGCCAAAGCCCAAAGATTTTGGTTCACCTTGGTTCATGTTTTCTGGATTTTGTTAGACCCCAGTTCTGTGTACTTTGTGGAAACTATAATGTTTTGGCAGCAGGAGCTGACTCAGCTGAGTGAAGGATCAGCAATTCAGCATGGAGATCATCTCACGGCAAATATGGGAAGCTCACTGGACGTTGGCTGA
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| CDS seq | ATGCTCCCGTCGCCACCGGCGCCGCCGCCGATCTCGCCGGCGCGGCTGCACAAGCTCGTGACCTCCCAGCCGGACCCGCTCCTCGCGCTCGAGCTCGTCACCGTCACCGCGCCGACCACCGCGCCCCACCCGTCGACGCTCCACGCGCTCGCGCTCCGCCTCTCCCGCCGCCGCGAACACCTCCCCCACGCGCTCGCGCTCCTGCGCCGCCTCCCGTCGCCGCCCTCCCCGCGGATCCTCCTCCCGCTGCTCCTCTCCGCGCTCCGCCTCCGCCGGCAGCCTCACCTCTTCCTCTCCACCTTCAACTCCCTCTTCGTCTCCGGCTCCAGCCCGTTGCCGCTCCACCCCGAGCTTCTCCTCCGCCTCCTCTCCGTTCTCTCTTCCACCGCTTCCTACTTCCCGTGCGCGCTGCACCTCCTCCGCGACGTCTCCACCCGCCTTCCCCTCCCCGAGCCGCTCGTCCTCGCCTCGCACAACCTGCTCATCGAAGCCGCCGCCCGCTCCGGCCACCTCGCCGTGTCAATCTCCCTCTTCCATCGCCTCCGCTCCCTCCATGTGTCTCCCAACGCCGAGACATACCGCATCCTGACCCAGTCACTATGCCGCAGGGGCCAGGTCCGCACTGCAGCCAACCTGCTCGACGAAATGCTCCACAGGGGCATCCCTGCTGACCCACTGGCATACACCACCGTGCTGAACGCGCTCTGCCGTAAGAAGCAGCTTCGAGAGGCTTACCGCTTGCTGTGCCTCATGCGAGGCCGTGAGGTCTCACCTGACATTGTACATTACAACACGGTCATCGTCGGAATGTGCCGTGAGGGACGGCCACTGGATGCCTGCAAGGTGTTCAGAGATATGAGGGAGAGTGGGTGCGCGCCAAATGCGGTGGCATATACTGCGGTGGTCAATAGGTTGTGTGTGAGTGGATTATATGACAAGGCAGAGGCATACCTTGATGATATGTTGGGCAAAGGGTTACTACCACATTTCTCTGTGTTCCATTCAGTGATTAAGGGATGCTGTGCAGTTGGGAAGGTCAATGAGGCTGCAGGGATGATGACTCGAATGCTTGATCTTGGAATGGTTCCACATGCTGAGACCTGGAGTTCAGTGATCAGGAGTGTTTGTAGTGATGAGGATAATGTCGAGGTTAGGAGATATTGTCTGACTTCAACTAAGCAGGAGCTGACTCAGCTGAGTGAAGGATCAGCAATTCAGCATGGAGATCATCTCACGGCAAATATGGGAAGCTCACTGGACGTTGGCTGA
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| Protein seq | MLPSPPAPPPISPARLHKLVTSQPDPLLALELVTVTAPTTAPHPSTLHALALRLSRRREHLPHALALLRRLPSPPSPRILLPLLLSALRLRRQPHLFLSTFNSLFVSGSSPLPLHPELLLRLLSVLSSTASYFPCALHLLRDVSTRLPLPEPLVLASHNLLIEAAARSGHLAVSISLFHRLRSLHVSPNAETYRILTQSLCRRGQVRTAANLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCLMRGREVSPDIVHYNTVIVGMCREGRPLDACKVFRDMRESGCAPNAVAYTAVVNRLCVSGLYDKAEAYLDDMLGKGLLPHFSVFHSVIKGCCAVGKVNEAAGMMTRMLDLGMVPHAETWSSVIRSVCSDEDNVEVRRYCLTSTKQELTQLSEGSAIQHGDHLTANMGSSLDVG |
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| Function | Pentatricopeptide repeat-containing protein At4g01400, mitochondrial [UniProtKB/Swiss-Prot:Q8LDU5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g36230 | LOC_Os09g36230.1 | Chr09 | 20894912 | 20896719 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTCCCGTCGCCACCGGCGCCGCCGCCGATCTCGCCGGCGCGGCTGCACAAGCTCGTGACCTCCCAGCCGGACCCGCTCCTCGCGCTCGAGCTCGTCACCGTCACCGCGCCGACCACCGCGCCCCACCCGTCGACGCTCCACGCGCTCGCGCTCCGCCTCTCCCGCCGCCGCGAACACCTCCCCCACGCGCTCGCGCTCCTGCGCCGCCTCCCGTCGCCGCCCTCCCCGCGGATCCTCCTCCCGCTGCTCCTCTCCGCGCTCCGCCTCCGCCGGCAGCCTCACCTCTTCCTCTCCACCTTCAACTCCCTCTTCGTCTCCGGCTCCAGCCCGTTGCCGCTCCACCCCGAGCTTCTCCTCCGCCTCCTCTCCGTTCTCTCTTCCACCGCTTCCTACTTCCCGTGCGCGCTGCACCTCCTCCGCGACGTCTCCACCCGCCTTCCCCTCCCCGAGCCGCTCGTCCTCGCCTCGCACAACCTGCTCATCGAAGCCGCCGCCCGCTCCGGCCACCTCGCCGTGTCAATCTCCCTCTTCCATCGCCTCCGCTCCCTCCATGTGTCTCCCAACGCCGAGACATACCGCATCCTGACCCAGTCACTATGCCGCAGGGGCCAGGTCCGCACTGCAGCCAACCTGCTCGACGAAATGCTCCACAGGGGCATCCCTGCTGACCCACTGGCATACACCACCGTGCTGAACGCGCTCTGCCGTAAGAAGCAGCTTCGAGAGGCTTACCGCTTGCTGTGCCTCATGCGAGGCCGTGAGGTCTCACCTGACATTGTACATTACAACACGGTCATCGTCGGAATGTGCCGTGAGGGACGGCCACTGGATGCCTGCAAGGTGTTCAGAGATATGAGGGAGAGTGGGTGCGCGCCAAATGCGGTGGCATATACTGCGGTGGTCAATAGGTTGTGTGTGAGTGGATTATATGACAAGGCAGAGGCATACCTTGATGATATGTTGGGCAAAGGGTTACTACCACATTTCTCTGTGTTCCATTCAGTGATTAAGGGATGCTGTGCAGTTGGGAAGGTCAATGAGGCTGCAGGGATGATGACTCGAATGCTTGATCTTGGAATGGTTCCACATGCTGAGACCTGGAGTTCAGTGATCAGGAGTGTTTGTAGTGATGAGGATAATGTCGAGGTTAGGAGATATTGTCTGACTTCAACTAAGCAGGAGCTGACTCAGCTGAGTGAAGGATCAGCAATTCAGCATGGAGATCATCTCACGGCAAATATGGGAAGCTCACTGGACGTTGGCTGA
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| Protein seq | MLPSPPAPPPISPARLHKLVTSQPDPLLALELVTVTAPTTAPHPSTLHALALRLSRRREHLPHALALLRRLPSPPSPRILLPLLLSALRLRRQPHLFLSTFNSLFVSGSSPLPLHPELLLRLLSVLSSTASYFPCALHLLRDVSTRLPLPEPLVLASHNLLIEAAARSGHLAVSISLFHRLRSLHVSPNAETYRILTQSLCRRGQVRTAANLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCLMRGREVSPDIVHYNTVIVGMCREGRPLDACKVFRDMRESGCAPNAVAYTAVVNRLCVSGLYDKAEAYLDDMLGKGLLPHFSVFHSVIKGCCAVGKVNEAAGMMTRMLDLGMVPHAETWSSVIRSVCSDEDNVEVRRYCLTSTKQELTQLSEGSAIQHGDHLTANMGSSLDVG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.972840 | 0.455668 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0532800 | RBH | 1.108210 | 0.662503 | 0.211078 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0532800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017540 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017610 | RBH | 0.087690 | 0.367034 | 0.653327 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017820 | RBH | 0.093012 | 0.0 | 1.565243 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0017600 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017740 | RBH | 1.104041 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0350200 | RBH | 10.3789475 | 3.431774 | 3.00867 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017580 | RBH | 0.152491 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0338400 | RBH | 0.199621 | 0.5365815 | 0.3881265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017630 | RBH | 0.067849 | 0.049758 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017410 | RBH | 0.298773 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017440 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017360 | RBH | 0.145253 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017500 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017880 | RBH | 0.058897 | 0.320845 | 0.266599 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017730 | RBH | 0.409117 | 0.0 | 0.615472 |
