Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0315200 | OGI:08042210 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:8665902-8667873 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGATCAACGATATTTCCATTGCATGTTAAAAAATTGATATCACAGAAATTAATCAAGTAAAAACAGGACAAACAGAAGAAACTGGTCTTACTTTCACAGTAGGGAAGAGTACCCGGGTGATGAAGGAACCTGACGTCCTGAAGAAGAGTGAGCTTGTGTCCAGTGGTAAGATTTCACTTCAGATCTACGCTGTTTGTGAGATAATAATTTAAATACCATGGGTAGGTACAGGATCAATACTCTTTTTTCGCTGGTAGTACTCTCGCATCTTTTGAAGCCTAGCTTCCTTGTCGCCAGCACTAAGAGCAGCATACCGCTCCCTAGCACGCTTCCGCGTAAATTAAATCGGAGTTAAATTAGTGATGCTACCAAGTGTACCTGCAGAAACTTGTACAGAAATCATTTCACAACATAGCAACAGTACGAAGCAGCGAGACGAAAAGGGAGAAAACAGATAATGTCCACAAATCAGATACACATTGTAGATATACCTTCAACAGGAAACTGTTTCTTTTACTTAAAACGAAATTGTCTAACAGGAAACTGTTTCTTTTACTTAAAACGAAATTGTCTAAGTGATACTTTCACATACATTTTGATTACAGCTCGAACAAAGCAGTACAGTGCTAAAATCACTTTGAAAAGTGAATTGGTTTCTGGACATTTGCTCAACATATTTATGAACTTTAGTTGATTTGTAACTTTTCTAGATGGGGGATGTCTAGCAATCGAATGCCATATAAGAAATTTTGTTTACCTTTTGTAGATGGGAATGTCCCTCAGTGATGGAGGGGAGACGGGCGAGTACTGCATCCACCTGCCGACAGCATCCAGCGACGACCGGAGGACTGGCGGCCAGCTTCCGGTGCGGCGCGAAAGGGACCGTGGTGGAGATCGACGGAGAGGAGCGGATCCAGTCGCGAGATGTGGCGTAGGCGACGGACTTTTGGCGTGGACGTGGGCTGCGCACGGGGAAGCGGAGTCGACGACGAAGGCCGCCGCGGGATGGGGGTGGTGGTCTAGTGGGAGGCCGGGATGTGGGGGGTTGATGCAGCCGGCCTGCGGAGGTGAGGTCGATGATGAATCCGGCTTGTAGACCTGGGAGGTCGTGGGCTTGTGGGGCGTGGATTCCACGGTGATTTGGGGACGTGGGATCGGCGATGGGAGAGGAGCGAGGCGGCGCGGTGGTTGGGCGGGGTGGGGAAGTGGCGTGGTGAGGACTTCCGGCGGCAGGGATCGGTCGAGGGTGCGCCTACGTGATGAGGCAGGAGGAGACGGCGGCGATGGGGGCGTCGGCGGTGGAGGCGTGGTGCGGCGACTGGGGAGGAGGATGGGGCGTTGGTGGCGGTGGCGCTGGCAGTGGGGGCGCCGCGGGAGGAGCCACCTGATGACGACAACCTGGAGCCGATGGCGACGCGGAGGAGTAGGCATCAACGGCGGGGGGAGCCGGGGAGGAGGAGTAGGCGTTGGCGGCGGGGAGGAGGAGTAGGAGTCGGCCCGGCGGGGGGATCTGAAGCGGACTCGACGGCGGGGGATTCGGCATCGGTTGCGGGTGGGTGGTGGATTCGGCGTCGGTGGTGGGTGGACGGAGGAGTAGGTGTTGGTGGCGGTGGCGGTGGCGTTGGCGTTGGCGGCGGGTGATGGGGAGGAGGAGGACGCGGCGGTGGACAGGACGGCGTGACTGGCGTTGGGGGCAGTGTCTAGGGTTTCGGAGTCCGCCGCAAGGAGTCCTCCCTGCGCCAGCGATGGTTTGACGGAGGCGGTGGCGGCGGCGAGGCGAGCAGTGGGGGAGGGAGCTGGTGGAGGACGGCGGGGAGGAGCGAAGGCGGCGGCGGCACGGGACGGTTAGGGGACGGCGATGGAGCCGTCGGCGACGCGGTGGAGGAGGACGGCGATGGCGGCGGGGAGGATCGAAGGCGACGGTGGCACAGGACGGTTAGGGTACGGCGATGGAGCCGGTGGATGCGGGCAT
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| CDS seq | CCGTCCCGTGCCGCCGCCGCCTTCGCTCCTCCCCGCCGTCCTCCACCAGCTCCCTCCCCCACTGCTCGCCTCGCCGCCGCCACCGCCTCCGTCAAACCATCGCTGGCGCAGGGAGGACTCCTTGCGGCGGACTCCGAAACCCTAGACACTGCCCCCAACGCCAGTCACGCCGTCCTGTCCACCGCCGCGTCCTCCTCCTCCCCATCACCCGCCGCCAACGCCAACGCCACCGCCACCGCCACCAACACCTACTCCTCCGTCCACCCACCACCGACGCCGAATCCACCACCCACCCGCAACCGATGCCGAATCCCCCGCCGTCGAGTCCGCTTCAGATCCCCCCGCCGGGCCGACTCCTACTCCTCCTCCCCGCCGCCAACGCCTACTCCTCCTCCCCGGCTCCCCCCGCCGTTGATGCCTACTCCTCCGCGTCGCCATCGGCTCCAGGTTGTCGTCATCAGGTGGCTCCTCCCGCGGCGCCCCCACTGCCAGCGCCACCGCCACCAACGCCCCATCCTCCTCCCCAGTCGCCGCACCACGCCTCCACCGCCGACGCCCCCATCGCCGCCGTCTCCTCCTGCCTCATCACGTAGGCGCACCCTCGACCGATCCCTGCCGCCGGAAGTCCTCACCACGCCACTTCCCCACCCCGCCCAACCACCGCGCCGCCTCGCTCCTCTCCCATCGCCGATCCCACGTCCCCAAATCACCGTGGAATCCACGCCCCACAAGCCCACGACCTCCCAGGTCTACAAGCCGGATTCATCATCGACCTCACCTCCGCAGGCCGGCTGCATCAACCCCCCACATCCCGGCCTCCCACTAGACCACCACCCCCATCCCGCGGCGGCCTTCGTCGTCGACTCCGCTTCCCCGTGCGCAGCCCACGTCCACGCCAAAAGTCCGTCGCCTACGCCACATCTCGCGACTGGATCCGCTCCTCTCCGTCGATCTCCACCACGGTCCCTTTCGCGCCGCACCGGAAGCTGGCCGCCAGTCCTCCGGTCGTCGCTGGATGCTGTCGGCAGGTGGATGCAGTACTCGCCCGTCTCCCCTCCATCACTGAGGGACATTCCCATCTACAAAAGATCTGAAGTGAAATCTTACCACTGGACACAAGCTCACTCTTCTTCAGGACGTCAGGTTCCTTCATCACCCGGGTACTCTTCCCTACTGTGA
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| Protein seq | PSRAAAAFAPPRRPPPAPSPTARLAAATASVKPSLAQGGLLAADSETLDTAPNASHAVLSTAASSSSPSPAANANATATATNTYSSVHPPPTPNPPPTRNRCRIPRRRVRFRSPRRADSYSSSPPPTPTPPPRLPPPLMPTPPRRHRLQVVVIRWLLPRRPHCQRHRHQRPILLPSRRTTPPPPTPPSPPSPPASSRRRTLDRSLPPEVLTTPLPHPAQPPRRLAPLPSPIPRPQITVESTPHKPTTSQVYKPDSSSTSPPQAGCINPPHPGLPLDHHPHPAAAFVVDSASPCAAHVHAKSPSPTPHLATGSAPLRRSPPRSLSRRTGSWPPVLRSSLDAVGRWMQYSPVSPPSLRDIPIYKRSEVKSYHWTQAHSSSGRQVPSSPGYSSLL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0315200 | OsNip_09t0315200-01 | Chr09 | 8665902 | 8667873 | - | RAP2018-11-26 | ||
| CDS seq | CCGTCCCGTGCCGCCGCCGCCTTCGCTCCTCCCCGCCGTCCTCCACCAGCTCCCTCCCCCACTGCTCGCCTCGCCGCCGCCACCGCCTCCGTCAAACCATCGCTGGCGCAGGGAGGACTCCTTGCGGCGGACTCCGAAACCCTAGACACTGCCCCCAACGCCAGTCACGCCGTCCTGTCCACCGCCGCGTCCTCCTCCTCCCCATCACCCGCCGCCAACGCCAACGCCACCGCCACCGCCACCAACACCTACTCCTCCGTCCACCCACCACCGACGCCGAATCCACCACCCACCCGCAACCGATGCCGAATCCCCCGCCGTCGAGTCCGCTTCAGATCCCCCCGCCGGGCCGACTCCTACTCCTCCTCCCCGCCGCCAACGCCTACTCCTCCTCCCCGGCTCCCCCCGCCGTTGATGCCTACTCCTCCGCGTCGCCATCGGCTCCAGGTTGTCGTCATCAGGTGGCTCCTCCCGCGGCGCCCCCACTGCCAGCGCCACCGCCACCAACGCCCCATCCTCCTCCCCAGTCGCCGCACCACGCCTCCACCGCCGACGCCCCCATCGCCGCCGTCTCCTCCTGCCTCATCACGTAGGCGCACCCTCGACCGATCCCTGCCGCCGGAAGTCCTCACCACGCCACTTCCCCACCCCGCCCAACCACCGCGCCGCCTCGCTCCTCTCCCATCGCCGATCCCACGTCCCCAAATCACCGTGGAATCCACGCCCCACAAGCCCACGACCTCCCAGGTCTACAAGCCGGATTCATCATCGACCTCACCTCCGCAGGCCGGCTGCATCAACCCCCCACATCCCGGCCTCCCACTAGACCACCACCCCCATCCCGCGGCGGCCTTCGTCGTCGACTCCGCTTCCCCGTGCGCAGCCCACGTCCACGCCAAAAGTCCGTCGCCTACGCCACATCTCGCGACTGGATCCGCTCCTCTCCGTCGATCTCCACCACGGTCCCTTTCGCGCCGCACCGGAAGCTGGCCGCCAGTCCTCCGGTCGTCGCTGGATGCTGTCGGCAGGTGGATGCAGTACTCGCCCGTCTCCCCTCCATCACTGAGGGACATTCCCATCTACAAAAGATCTGAAGTGAAATCTTACCACTGGACACAAGCTCACTCTTCTTCAGGACGTCAGGTTCCTTCATCACCCGGGTACTCTTCCCTACTGTGA
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| Protein seq | PSRAAAAFAPPRRPPPAPSPTARLAAATASVKPSLAQGGLLAADSETLDTAPNASHAVLSTAASSSSPSPAANANATATATNTYSSVHPPPTPNPPPTRNRCRIPRRRVRFRSPRRADSYSSSPPPTPTPPPRLPPPLMPTPPRRHRLQVVVIRWLLPRRPHCQRHRHQRPILLPSRRTTPPPPTPPSPPSPPASSRRRTLDRSLPPEVLTTPLPHPAQPPRRLAPLPSPIPRPQITVESTPHKPTTSQVYKPDSSSTSPPQAGCINPPHPGLPLDHHPHPAAAFVVDSASPCAAHVHAKSPSPTPHLATGSAPLRRSPPRSLSRRTGSWPPVLRSSLDAVGRWMQYSPVSPPSLRDIPIYKRSEVKSYHWTQAHSSSGRQVPSSPGYSSLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.425273 | 2.529001 | 0.519746 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0584050 | RBH | 1.563570 | 2.478309 | 0.881693 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g14614 | RBH | 1.700070 | 2.277265 | 0.321778 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0315200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024670 | SBH | 0.484495 | 2.890014 | 5.983991 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024470 | SBH | 0.353079 | 0.592186 | 1.819961 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024500 | SBH | 0.819404 | 2.046882 | 11.966833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005260 | RBH | 0.350289 | 0.083429 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005470 | RBH | 4.518407 | 10.904340 | 8.610903 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0153700 | RBH | 0.9578485 | 3.0619865 | 2.4407975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005630 | RBH | 0.567441 | 0.111599 | 1.329267 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0024340 | SBH | 0.151305 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024380 | SBH | 0.731386 | 6.503435 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0024450 | SBH | 1.670088 | 6.611038 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012020 | RBH | 0.820128 | 0.313376 | 1.086167 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024130 | SBH | 0.282104 | 1.553886 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024180 | SBH | 0.373926 | 1.618529 | 2.455849 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005400 | RBH | 0.765483 | 0.0 | 0.980478 |
