Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0024340 | OGI:03060720 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:23618609-23621530 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatttaataattccacgtctctaataagataaaacagataataagctcccatacaataatttaatgaccatacaatactttgtatagataatctttccgatagaaagagcactgctacagaCcaaaggatgaactgccccaaacgggcatagcatgagtacagcagacccattacatataacgttaaataacaaatacataaatgaccgtcttcctattttactgccaaatgatgccttagaaggctcatagatGgaggaagggttatataggcctcagtcctcagaagtacctttccatgaacccgagttaaatataatagaggtgaccaacatcagttaaaagaaacAcatgtagtAGagagaataaactttatgcaatgtaaattatgaactaatgctcacggaatcagtgtcaGctaaaaaaatgtgtggttatgtattaatgtgatctaaattagagttcgtaagtactacagcctattctctgcaacgttaaatggatacggaaattgatggggcaaggcaaaccggcaaagtgttctctcgtactgcattccagataatcaaatgtgcagtaaacaatagtttacagcgatatgcaataatattaacaaccttccttttctatactcattAagcttaattgaaggaaatgattctgccaagatgcattgatagcagtaagatgactgcattggtaaggaagataatatacaggtaaagaaactaaccgtgtgagcatagatgatgcaatttactccatgactgaatcagggattagtgtattttctgctcgcatattgactaaatttcattgagtggaggtcttctctcacatttatagaattaaggtgtggtttatcatcatgaattcaggtgtggtttatcaccatgaattcccatcagcaattgcgctgatcatcAGaacttaacatgagacacttaccatgaggaagtatatatataatcacatccAaaattttatgtctaatgtgagcacctagccagtaaaacaactaccaggatcatgaccaaacagtatgttaataccataggagaagtcgttatagtgatgagtgtgcaccacatgtaaatgcggcatcacagataaataaattgacagacacaacatagatcaacgatatttccattgcatgttaaaaaattgatatcgcagaaattaatcaagtAaaaacaggacaaacagaagaaactggtcttactttcacagtagggaagagtatccgggtgatgaaggaacctgacgtcctgaagaagagtgagcttgtgtccagtggtaagatttcacttcagatctacgccgtttgtgagataataatttaaataccatgggtaggtacaggatcaatactcttttttcgctggtagtactctcgcatcttttgaagcctagcttccttgtcgccagcactaagagcagcataccgctccctagcacgcttccgcgtaaattaaatcggagttaaattagtgatgccgccaagtgtacctgcagaaacttgtacagaaatcatttcacAacatagcaacagtacgaagcagcgagacgaaaagggagaaaacagataatgtccacaaatcagatacacattgtagatataccttcaacaggaaactgtttcttttacttaaaacgaaattgtctaacaggaaactgtttcttttacttaaaacgaaattgtctaagtgatactttcacatacattttgattacagctcgaacaaagcagtacagtgctaaaatcactttgaaaagtgaattggtttctggacatttgctcaacatatttatgaactttagttgatttgtaacttttctagatgggggatgtctagcaatcgaatgccatataagaaattttgtttatcttttgtagatGggaatgtccctcagtgatggaggggagacgggcgagtactgcatccAcctgccgacagcatccagcgacgaccggaggactggcggccagcttccggtgcggcgcgaaagggaccgtGgtggagatcgacggagaggagcggatccagtcgcgagatgtggcataggcgacggacttttggcgtggacgtgggctgcgcacggggaagcggagtcgacgacgaaggccgccgcgggatGggggtggtggtctagtgggaggccGggatgtggggggttgatgcagccggcctgcggaggtgaggtcgatgatgaatccggcttgtagacctgggaggtcgtGggcttgtggggcgtggattccacggtgatttGgggacgtgggatcggcgatgggagaggagcgaggcggcgcggtggttgggcggggtggggaagtggcgtggtgaggacttccggcggcagggatcggtcgagggtgcgcctacgtgatgaggcaggaggagacggcggcgatgggggcgtcggcggtggaggcgtggtgcggcgactggggaggaggatggggcgttggtggcggtggcgctggcagtgggggcgccacgggaggagccacctgatgacgacaacctggagccgatggcgacgcggaggagtaggcatcgacggcggggggagccggGGAggagtaggcgttggcagcggggaggaggaggagtaggagtcggCccggcggggggatctgatgcggactcgacggcGggggattcggcatcggttgcgggtgggtggtggattcggcgtcggtggtgggtggacggaggagtaggtgttggtggcggtggcggtggcgttggcggcgggtgatggagaggaggaggacgcggcggtggacaggacggcgtgactggcgttGggggcagtgtctagggtttcggagtccgccgcaaggagtcctccctgcgccagcgatggtttgacggaggcggtggcggcggcgaggcgagcagtgggggaggg
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| CDS seq | atgcctactcctccgcgtcgccatcggctccaggttgtcgtcatcaggtggctcctcccgtggcgcccccactgccagcgccaccgccaccaacgccccatcctcctccccagtcgccgcaccacgcctccaccgccgacgcccccatcgccgccgtctcctcctgcctcatcacgtaggcgcaccctcgaccgatccctgccgccggaagtcctcaccacgccacttccccaccccgcccaaccaccgcgccgcctcgctcctctcccatcgccgatcccacgtcccCaaatcaccgtggaatccacgccccacaagccCacgacctcccaggtctacaagccggattcatcatcgacctcacctccgcaggccggctgcatcaaccccccacatccCggcctcccactagaccaccaccccCatcccgcggcggccttcgtcgtcgactccgcttccccgtgcgcagcccacgtccacgccaaaagtccgtcgcctatgccacatctcgcgactggatccgctcctctccgtcgatctccacCacggtccctttcgcgccgcaccggaagctggccgccagtcctccggtcgtcgctggatgctgtcggcagtgaaatcttaccactggacacaagctcactcttcttcaggacgtcaggttccttcatcacccggatactcttccctactgtgaaagtaagaccagtttcttctgtttgtcctgttttTacttga
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| Protein seq | MPTPPRRHRLQVVVIRWLLPWRPHCQRHRHQRPILLPSRRTTPPPPTPPSPPSPPASSRRRTLDRSLPPEVLTTPLPHPAQPPRRLAPLPSPIPRPQITVESTPHKPTTSQVYKPDSSSTSPPQAGCINPPHPGLPLDHHPHPAAAFVVDSASPCAAHVHAKSPSPMPHLATGSAPLRRSPPRSLSRRTGSWPPVLRSSLDAVGSEILPLDTSSLFFRTSGSFITRILFPTVKVRPVSSVCPVFT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0024340 | OsLima_03g0024340.01 | Chr03 | 23618609 | 23621530 | - | NAM | ||
| CDS seq | atgcctactcctccgcgtcgccatcggctccaggttgtcgtcatcaggtggctcctcccgtggcgcccccactgccagcgccaccgccaccaacgccccatcctcctccccagtcgccgcaccacgcctccaccgccgacgcccccatcgccgccgtctcctcctgcctcatcacgtaggcgcaccctcgaccgatccctgccgccggaagtcctcaccacgccacttccccaccccgcccaaccaccgcgccgcctcgctcctctcccatcgccgatcccacgtcccCaaatcaccgtggaatccacgccccacaagccCacgacctcccaggtctacaagccggattcatcatcgacctcacctccgcaggccggctgcatcaaccccccacatccCggcctcccactagaccaccaccccCatcccgcggcggccttcgtcgtcgactccgcttccccgtgcgcagcccacgtccacgccaaaagtccgtcgcctatgccacatctcgcgactggatccgctcctctccgtcgatctccacCacggtccctttcgcgccgcaccggaagctggccgccagtcctccggtcgtcgctggatgctgtcggcagtgaaatcttaccactggacacaagctcactcttcttcaggacgtcaggttccttcatcacccggatactcttccctactgtgaaagtaagaccagtttcttctgtttgtcctgttttTacttga
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| Protein seq | MPTPPRRHRLQVVVIRWLLPWRPHCQRHRHQRPILLPSRRTTPPPPTPPSPPSPPASSRRRTLDRSLPPEVLTTPLPHPAQPPRRLAPLPSPIPRPQITVESTPHKPTTSQVYKPDSSSTSPPQAGCINPPHPGLPLDHHPHPAAAFVVDSASPCAAHVHAKSPSPMPHLATGSAPLRRSPPRSLSRRTGSWPPVLRSSLDAVGSEILPLDTSSLFFRTSGSFITRILFPTVKVRPVSSVCPVFT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.151305 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0584050 | RBH | 1.563570 | 2.478309 | 0.881693 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g38745 | RBH | 1.057367 | 1.666869 | 0.226965 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0584050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024670 | RBH | 0.484495 | 2.890014 | 5.983991 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024470 | RBH | 0.353079 | 0.592186 | 1.819961 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024500 | RBH | 0.819404 | 2.046882 | 11.966833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024580 | RBH | 0.120784 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024260 | RBH | 7.088832 | 1.251118 | 12.154457 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0371000 | RBH | 0.679713 | 3.0311195 | 2.206129 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024050 | RBH | 0.230493 | 0.000000 | 0.277914 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0373800 | RBH | 0.9829505 | 4.332116 | 2.409936 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024380 | RBH | 0.731386 | 6.503435 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0024450 | RBH | 1.670088 | 6.611038 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024130 | RBH | 0.282104 | 1.553886 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024180 | RBH | 0.373926 | 1.618529 | 2.455849 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024150 | RBH | 2.046924 | 7.261820 | 2.301884 |
