Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0012020 | OGI:08042210 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:16509813-16512788 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatttaataattccacgtctctaataagataaaacagataataagctcccatacaataatttaatgaccatacaatactttgtatagataatctttctgatagaaagagcactgctacagaccaaaggatgaactgccccgaaagggcatagcatgagtacagcagacccgttacatataacgttaaataacaaatacataaatgaccgtcttcccattttactgccaaatgatgccttcgaaggctcatagatgaaggaagggttatataggcctcagtcctcagaagtacctttccatgaacccgagttaaatataatagaggttaccaacatcagttaaaagaaacacatgtagtagagagaataaactttatgcaatgtaaattatgaactaatgctcacggaatcagtgtcagctaaaaaaatgtgtggttatgtattaatgtgatctaaattagagttcgtaagtactgcagcctattctctgcaacgttaaatggatacggaaattgatggggcaaggcaaaccagcaaagtgttctctcgtactgcattccagataatcaaatgtgcagtggatagtttacagcgatatgcaataatattaacaaccttccttttctatactcattaagcttaattgaaggaaatgattctgccaagatgcattgatagcagtaagatgactgcattggtaaggaagataatatacaggtaaagaaactaaccgtgtgagcatagatgatgcaatttactccatgactgaatcagggattagcgtattttctgctcgcatattgactaaatttcattgagtggaggtcttctctcacatttatagaattcaggtgtggtttatcatcatgaattcaggtgtggtttatcaccatgaattcccatcagcaattacgctggtcatcagaacttaacatgagacacttaccatgaggaagtatatatataatcacatccaaaattttatgtctaatgtgagcacctagccagtaaaacaactaccaggatcatgaccaaacagagagacggtatgttaataccataggagaagttgtagtgatgagtgtgcaccacatgtaaatgcggcatcacagatcaataaattgacagacacaacatagatcaatgatatttccattgcatgttaaaaaattgatatcgcagaaattaatcaagtaaaaacaggacaaacagaagaaactggtcttactttcacagtagggaagagtacccgggtgatgaaggaacctgacgtcctgaagaagagtgagcttgtgtccagtggaaagattttacttcaaatctacaccatttgtgagataataatttaaataccatgggtaggtacaggatcaatactcttttttcgctggtagtactctcgcatcttttgaagcctagcttccttgtcgccagcactaagagcagcataccgctccctagcacgcttccgcgtaaattaaatcggagttaaattagtgatgccgccaagtgtacctgcagaaacttgtacagaaatcatttcacaacatagcaacagtacgaagcagcgagacgaaaagggagaaaacagataatgtccacaaatcaaatacacattgtagatataccttcaacaggaaactgtttcttttacttaaaacgaaactgtctaagtgatactttcacatacattttgattacagctcgaacaaagcagtacaatgctaaaatcactttgaaaagtgaattggtttctggacatttgctcaacaaatttatgaactttagttgatttgtaacttttctagatgggggatgtctagcaatcgaatgctatataagaaattttgtttaccttttgtagatgggaatgtccctcagtgatggaggggagacgggcgagtactgcatccacctgccgacagcatccaacgacgaccggaggactggcggccagcttccggtgcggcgcgaaagggaccgtggttgagatcgacggagaggagcggatccagtcgcgagatgtggcataggcgacggactgttggcgtggacgtgggctgcgcacggggaagcggagtcgacgacggaggccgccgcgggatgggggtggtggtctagtgggaggccgggatgtggggggttgatgtagccggcctgtggaggtgaggtcgatgatgaatccggcttgtagacctgggaggtcgtgggcttgtggggcgtggattccacagtgatttggggacgtgggatcggcgatgggagaggagcgagacggcgcggtggttgggcggggtggggaagtggcgtggcgaggagggcttccagcggcggggatcggtcgagggcgtgcctatgtgatgaggcaggaggagacggcggcgatgggggcgtcggcggtggaggcgtggtgcggcgactggggaggaggatggggcgttggtggcggtggcggtgggggccccgcgggaggagccacctgatgacgacaacctggagccgatggcgacgcggaggagtaggcatcggcggcggggggagccggggaggaggagtaggagtcggcccggcggggggatctggagcggactcgacggcgggggattcggcgtcagttgcgggtgggtggaggattcggcgtcggtggtgggtggacggaggagtaggcgttggtggcggtggcgttggcggcgggtgatggggaggaggaggacgcggcggcggacaggacggtgtgaccggcgttgggggcagtgtctagggtttcggagtctgccgcgaggagtcctccctgcgccagcggtggtttgacggaggcggtggcggcggcgaggcgagcagtggggaaggaagctggtggaggatagcggggaggagcgaaggcggcggcggcatgggacggttaggggacggcgatggagcagtcggcgacgcagtggaggaggacggcgatggcggcggggaggatcgaaggcga
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| CDS seq | atgcctactcctccgcgtcgccatcggctccaggttgtcgtcatcaggtggctcctcccgcggggcccccaccgccaccgccaccaacgccccatcctcctccccagtcgccgcaccacgcctccaccgccgacgcccccatcgccgccgtctcctcctgcctcatcacataggcacgccctcgaccgatccccgccgctggaagccctcctcgccacgccacttccccaccccgcccaaccaccgcgccgtctcgctcctctcccatcgccgatcccacgtccccaaatcactgtggaatccacgccccacaagcccacgacctcccaggtctacaagccggattcatcatcgacctcacctccacaggccggctacatcaaccccccacatcccggcctcccactagaccaccacccccatcccgcggcggcctccgtcgtcgactccgcttccccgtgcgcagcccacgtccacgccaacagtccgtcgcctatgccacatctcgcgactggatccgctcctctccgtcgatctcaaccacggtccctttcgcgccgcaccggaagctggccgccagtcctccggtcgtcgttggatgctgtcggcaggtggatgcagtactcgcccgtctcccctccatcactgagggacattcccatctacaaaaggtacacttggcggcatcactaa
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| Protein seq | MPTPPRRHRLQVVVIRWLLPRGPHRHRHQRPILLPSRRTTPPPPTPPSPPSPPASSHRHALDRSPPLEALLATPLPHPAQPPRRLAPLPSPIPRPQITVESTPHKPTTSQVYKPDSSSTSPPQAGYINPPHPGLPLDHHPHPAAASVVDSASPCAAHVHANSPSPMPHLATGSAPLRRSQPRSLSRRTGSWPPVLRSSLDAVGRWMQYSPVSPPSLRDIPIYKRYTWRHH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0012020 | OsLiXu_08g0012020.01 | Chr08 | 16509813 | 16512788 | - | NAM | ||
| CDS seq | atgcctactcctccgcgtcgccatcggctccaggttgtcgtcatcaggtggctcctcccgcggggcccccaccgccaccgccaccaacgccccatcctcctccccagtcgccgcaccacgcctccaccgccgacgcccccatcgccgccgtctcctcctgcctcatcacataggcacgccctcgaccgatccccgccgctggaagccctcctcgccacgccacttccccaccccgcccaaccaccgcgccgtctcgctcctctcccatcgccgatcccacgtccccaaatcactgtggaatccacgccccacaagcccacgacctcccaggtctacaagccggattcatcatcgacctcacctccacaggccggctacatcaaccccccacatcccggcctcccactagaccaccacccccatcccgcggcggcctccgtcgtcgactccgcttccccgtgcgcagcccacgtccacgccaacagtccgtcgcctatgccacatctcgcgactggatccgctcctctccgtcgatctcaaccacggtccctttcgcgccgcaccggaagctggccgccagtcctccggtcgtcgttggatgctgtcggcaggtggatgcagtactcgcccgtctcccctccatcactgagggacattcccatctacaaaaggtacacttggcggcatcactaa
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| Protein seq | MPTPPRRHRLQVVVIRWLLPRGPHRHRHQRPILLPSRRTTPPPPTPPSPPSPPASSHRHALDRSPPLEALLATPLPHPAQPPRRLAPLPSPIPRPQITVESTPHKPTTSQVYKPDSSSTSPPQAGYINPPHPGLPLDHHPHPAAASVVDSASPCAAHVHANSPSPMPHLATGSAPLRRSQPRSLSRRTGSWPPVLRSSLDAVGRWMQYSPVSPPSLRDIPIYKRYTWRHH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.820128 | 0.313376 | 1.086167 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0315200 | RBH | 1.425273 | 2.529001 | 0.519746 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g14614 | RBH | 1.700070 | 2.277265 | 0.321778 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0315200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024670 | RBH | 0.484495 | 2.890014 | 5.983991 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011810 | RBH | 0.705836 | 0.629561 | 3.477955 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024500 | RBH | 0.819404 | 2.046882 | 11.966833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011610 | RBH | 0.657780 | 4.987243 | 1.786679 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0227200 | RBH | 0.5763745 | 2.7189225 | 3.793946 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011700 | RBH | 0.000000 | 0.000000 | 0.105734 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0240700 | RBH | 0.8286365 | 3.3977985 | 3.645443 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011370 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011230 | RBH | 1.890638 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011310 | RBH | 0.468997 | 2.349677 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011480 | RBH | 0.000000 | 0.000000 | 0.636747 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011460 | RBH | 0.730696 | 0.779392 | 0.760577 |
