Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0014630 | OGI:08042210 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:19152523-19155577 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caaaagcttatatgtaaactgagaaaaatgctgccacataatttgcatacaaatagtttctgatcaatgtcaaatttccatcaagaaatctctgctacaatttcacttctaatgaacctgctaacctctctccatgtctccagctcgtgccataagctcccactcccacactccttttcctggcaagtggctagtacaccaaggccacacgctagagtgatctagagcctgcccaaatgaaatgacatgagaagccacatgaagaactttggaagcacgatagttcttcagtaatatctgctttactggtcaagttgatcactcaacacatctataaagacatgaaattctaataccttcgatcttttgacatcaatttactggtcagaacacagcatatctataacaccaagagaaccaaaatttgtcatcttaaagcaattattggaacatttaaaataaaaggaatgtattgtgcaggcctatgttttgacagacacatgaatttgaaaattttccagtttgatagtttggagctaaaacttggacttgtgcaggcctgcgttttgagataaattaagctagtaatgtgtgatgtcatgcataaatcattctgaactttaataatctgaaacttgcacgtgtattgattctgaaatctgaacatgggcatgcaTtttttttgtcaacctatctgcacagatagcttccatctactttgaaggaagatctgataatgatatactacagtgcacagatgaacacatcactgcatattttggtccaaatataagaatgcttattacacaaacactataagatggcacaatccagttcatgaaaggaaaacactgatttttttttcctatgaaaaacaaaaggtgcaattacagaataaaaagcaacaaattttacctggaagcgctaatgtgttgaagcgctgcagcacccttcccctgccctcgcccttgatctgttggcaggttcttcactgcactgaattgaactttgcattcacctgtcaacttagcacttacagacagaaatgtcccgaataggataatgtcatttatgaatggtgccgctataatattccagctattgaaaggagaaagtgtaaaatatggttattaaatcaagaagactgtcaatttaaatgagaagcgggaaaaattcatactcattagtcaactgaatagcgatttgagtaggaagcatatcatcctcctagggaaagaaacgtgcaaacatcagaaaaaccgtttcgcatcaaagtgaaaaaatcacagatatacaaccatgacaggctcaacagcatatgaagctaacaattaacagcatgacgaatcggggaaatatccaggcacccatcacaatgcaatgcaacagattcgtgtatgaatcagggattagtggtggcggtgaccacccaattaccaggacaggctcaacagcatatgaatcagggattagtgtattttttgctcgcatattgactaaatttcattgagtggaggtcttctctcacatttatagaattcaggtgtggtttatcaccatgaattcccatcagcaattacgctgatcatcagaacttaacatgagacacttaccatgaggaagtatatatataatcacatccaaaattttatgtctaatgtgagcacctagccagtaaaacaactaccaggatcatgaccaaacagagaaacagtatgttaataccataggagaagtcgttgtagtgatgagtgtgcaccacatgtaaatgcggcatcacagatcaataaattgacagacacaacatagatcaacaatatttccattgcatgttaaaaaattgatatcgcagaaattaatcaagtaaaaacaggacaaacagaagaaactggtcttactttcacagtagggaagagtacccgggtgatgaaggaacctgacgtcctgaagaagagtgagcttgtgtccagtggcaagatttcacttcagatctatgccgtttgtgagataataatttaaataccatgggtaggtacaggatcgatactctcgcatcttttgaagcctagcttccttgtcgtcagcactaagattaatttcttgtcgtcagcgctaagagcagcatatcgctccctagcacgcttccgcgtaagttaaatcagagttaaattagtgatgccgccaagtgtacctgcagaaacttctacagaaatcatttcacaacatagcaacagtacgaagcagcgagacgaaaagggagaaaacagataatgtccacaaatcagatacacattgtagatataccttcaacaggaaactgtttcttttacttaaaacgaaactgtccaactgatactttcacatacgttttgattacagctcgaacaaagcagtacagtgctaaaatcactttgaaaagtgaattggtttctggacacttgctcaacaaatttatgaactttagttgatttgtaacttttctagatgggggatgtctaacaatcgaacgccatataagaaattttgtttaccttttgtagatgggaatgtcactcggtgatggaggggagacgggcgaccagagtactgcatccacctgccgacagcaaccagcgacgaccggaggactggcgggcagcttccggtgtggcgcgaaagggaccgtggtggagatcgacggagaggagcgctgggtcggcgacgtggtgggggaggacggcgatggcggtggcgaggacagcagtgggggagggagctggtgtgggagggatgaggcgaggagctaggtcggcgacgcggtgggggaggacggcgatggcggcgctgggtcggcgacgcggtgggggaggacggcgatgattgacgcggtgggggaggaaggcgatggcggcactgggtcggcgacgaggtggggaggacggcgatggcggggaggatcgaaggcgacggcggcggatgcgatggatgcgggcgcgatcccccgatgcgtgagggatgagccggggagttgggtggggatcgttgcgccgttggatttagcgatccgacggctcat
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| CDS seq | ccatcgcatccgccgccgtcgccttcgatcctccccgccatcgccgtcctccccacctcgtcgccgacccagtgccgccatcgccttcctcccccaccgcgtcaatcatcgccgtcctcccccaccgcgtcgccgacccagcgccgccatcgccgtcctcccccaccgcgtcgccgacctagctcctcgcctcatccctcccacaccagctccctcccccactgctgtcctcgccaccgccatcgccgtcctcccccaccacgtcgccgacccagcgctcctctccgtcgatctccaccacggtccctttcgcgccacaccggaagctgcccgccagtcctccggtcgtcgctggttgctgtcggcaggtggatgcagtactctggtcgcccgtctcccctccatcaccgagtgacattcccatctacaaaagtttctgcaggtacacttggcggcatcactaatttaactctg
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| Protein seq | PSHPPPSPSILPAIAVLPTSSPTQCRHRLPPPPRQSSPSSPTASPTQRRHRRPPPPRRRPSSSPHPSHTSSLPHCCPRHRHRRPPPPRRRPSAPLRRSPPRSLSRHTGSCPPVLRSSLVAVGRWMQYSGRPSPLHHRVTFPSTKVSAGTLGGITNLTL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0014630 | OsARC_08g0014630.01 | Chr08 | 19155305 | 19155577 | - | NAM | ||
| CDS seq | atgagccgtcggatcgctaaatccaacggcgcaacgatccccacccaactccccggctcatccctcacgcatcgggggatcgcgcccgcatccatcgcatccgccgccgtcgccttcgatcctccccgccatcgccgtcctccccacctcgtcgccgacccagtgccgccatcgccttcctcccccaccgcgtcaatcatcgccgtcctcccccaccgcgtcgccgacccagcgccgccatcgccgtcctcccccaccgcgtcgccgacctag
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| Protein seq | MSRRIAKSNGATIPTQLPGSSLTHRGIAPASIASAAVAFDPPRHRRPPHLVADPVPPSPSSPTASIIAVLPHRVADPAPPSPSSPTASPT |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0014630 | OsARC_08g0014630.02 | Chr08 | 19152523 | 19155488 | - | IsoSeq | ||
| CDS seq | ccatcgcatccgccgccgtcgccttcgatcctccccgccatcgccgtcctccccacctcgtcgccgacccagtgccgccatcgccttcctcccccaccgcgtcaatcatcgccgtcctcccccaccgcgtcgccgacccagcgccgccatcgccgtcctcccccaccgcgtcgccgacctagctcctcgcctcatccctcccacaccagctccctcccccactgctgtcctcgccaccgccatcgccgtcctcccccaccacgtcgccgacccagcgctcctctccgtcgatctccaccacggtccctttcgcgccacaccggaagctgcccgccagtcctccggtcgtcgctggttgctgtcggcaggtggatgcagtactctggtcgcccgtctcccctccatcaccgagtgacattcccatctacaaaagtttctgcaggtacacttggcggcatcactaatttaactctg
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| Protein seq | PSHPPPSPSILPAIAVLPTSSPTQCRHRLPPPPRQSSPSSPTASPTQRRHRRPPPPRRRPSSSPHPSHTSSLPHCCPRHRHRRPPPPRRRPSAPLRRSPPRSLSRHTGSCPPVLRSSLVAVGRWMQYSGRPSPLHHRVTFPSTKVSAGTLGGITNLTL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011370 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012020 | RBH | 0.820128 | 0.313376 | 1.086167 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011310 | RBH | 0.468997 | 2.349677 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011480 | RBH | 0.000000 | 0.000000 | 0.636747 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011460 | SBH | 0.730696 | 0.779392 | 0.760577 |
