Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0501000 | OGI:08071080 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:24734910-24738361 | ||||||||
| Gene Symbol | RLCK254, OsRLCK254, - | ||||||||||
| DNA seq | TTATCGAGGAAACGATAGCATTTCCTCTTCCATGGATTGACTACTTGCTTCTGTGGCAACTCCTTCAATTGACATGTATAGTGCTGAAATTTGATTTTTACTGGGTCTACTTGATTCCCTATTTCCCTTATGGAAGGGGCCCTTTTTTGATAATATGTTTTCCAGTGCCATCTCTACTTCTCTCATTGAAGGCCGTTCTCCTCCTTTCAATTTAGTACACAGTGCAGCTACTTCATGGACTTCTCCATCTTCCTCCTCCTTGACTTGAGGATCTATTATGTTAATAAGGTTTCCTTCTGAGAGCAGCAAAATAAAATGTGAAACAAGGCCATCACCATCGAACGTGTCAACAACAGGTTTCTTTCGAGTAAGCAACTCCACAAGAAGAACTCCAAAACTAAAAACATCGCTCTTGTCAGTTAGTCGACCAATATAATAGTACATGGGATCTAAGTAGCCAATTGTTCCTTGAACAGTTGTAGTTATTTCAGATCGATCTATCGGGGTGTACTTTGAAGCCCCAAAATCTGATACCTTCGCTGTTAAACTATCATCAAGAAGTATATTGGAGGACTTAATATCTCTATGATAAATTGGCATTGAAGAAGCTGAGTGTAGATAGGACAAAGCTCTAGCAACCTCAAGTGAAATCCTTAATCGATCATCCCATGACAGTGAGATTGGACCATCGACATGAAGATGATGATAAAGGGCCCCATGTGAAATGAATTCATAACCAACAATGGAACTTCTGTCTCAAGGCAACATCCTAGGAGCTTCACCACATTTCTATGGTTAATTTGAGAAAGTATTGCGACCTCATTTATGAATTCACCTATTTCTCTTTGAACTATAATCTTTGATTTTTTTATGGCCACAACATTCAGGTCTAGAATCCCCTTGAACACGACTCCATGCCCTCCATCTCCGACTTGGCAAGATCTATCAAAATTGTTTGTGGCCTTTTGGAGCTCCTCTAAGGTAATTATCATTCGCTCACCAAAATCTGTGTTTCTTGATATTAACTGCTGCAGTAGCAATCCATGATTTTGCTTAAAGAACTTTTCTTTCAGTTTTTTCTCCCTGCGTTGCTTGACCACACGTGCTACTAGGGGAGTAGCAAGTACCAGAATAAGAACAATTGATCCACCAGAAACTATTAGAGCTATGCTTAGCCCTGAAAAGGAAGATCCATGAAGAGGCAAATCTAGTGAATAAATTTTTGAGATATGTTGGACTAAGAAAGATCTAAGCTATAAATTTTGGAATGATTATCAAACTACCATAGACTCGCTATATAAACCGAGTTTGTATTATCATGCAAAGATAAGGATACATAAATTTGGTAAGATATACTTCATCCGTCTAAAAAAAAAACCGAATCTAGGACTGGATGTGACACATTCTAGTACAATGAATTTGGATAAATGTGTCACATCCAGTACATTGGTTTCTTATGGGACGGAGGGAGTATGCTCTTTAGTGAATTGTCACCTGTCAAAGAATTCTTGGATGTGATGCATCCCCCCTTTTTAAAGGGATCCCCATATCCATTTTGACATCGACAATGAAATGACCCATGCGTATTTATGCAGATTCCATAGCATGAATGCGCCGGTCTGCACACTCATCAATGTCTACATAAACAATACAACTTACTGAAAGTACACACCTAGAAAGGAGATCTAAAACAATGTTGAGAAATCAAGAGATATATTAGCTAGTTGTGCGTTTCTCTGGTAGTGTGGATTATATATAAAATTTTGAAGCTATTAATTTCAGTTTTTTAGACTATTAATAAATTAAATTGTTTTTGTTCTTGAGTGCTTAAAACAAATTTATATAACTTTTAACTAAAAAATGGTGCAAAAGTATGTAATGTAAATTGCTTGTGCGAATATATGGGGGTTACCAATTATTGTACTCAATTATGTATCAATCTAAGGAAGTAACTTGTTTTGTTATACATATGTCGTTATGTTGAAACACTCGTATTTATCTACATACCTTCGCATCCGTTTGGTTGAGTAGCGTTGCCCTTTAAGCCATCTCGGCACCGACAGTTATATCCTCCTTGCGTGTTAGTGCAATCGCCAAAACATGGATATATATCGGGAGAATGACACTCATCGATGTCTAGATATGCAAAATTGTATTGGTCAGGAGAGGGAAAAGTCTGATCGTTTTAGATAATGAAGAAGGAAAAGTCTAGGTTGGAAAATTAATTGTGATTAGAACTAAAGTTATCTTTGCAAAACGACCACAAAACCATACTTGGAAGAAAACATATAAGGAAATGCACAAATCTACCCTTTTCAAAAAGGGACAATATCCACATATATGGGGCCACTTCTAGCATCATCGGTCACTATTAGGAATTTCTTTTGTACGTTGGTAATTATAAATCTTATAGTTCATTTGTGTAAGAGTATATATGAAAAATAAAATCATTTGATGGTTGATTGCACATGATTTTTAATATGATTCTTTATATAAACAATGATCCATGTGAATGCAAAGTTTAAGGACCCGTGTTCATAACGTATACCTTTGCATCCATCAATGATGTATGGATTGCCTTGATAACCATAAGAGTACTTGCACCGATACCCGTTGTTTGCCCAAGCATCAGTGTCTTGGCAAGAGCTATGGGCACTGCGACACTCGGGGGCAGATGAATTTCTAGGACAATAACTTGTCGAATTACTGATTACCCATTCCAGCAAGGCTGGGAGCGCTTGCGGATCTCTGTCGGAATCAAAAATAATGAGATCGACATTGGAATTAATGAAATTGGTATAGTTGAATCCCTGGTCCACCATGTAGATATTTAAAAAGTTTGCATCACCGTGAATCTGGATGAGATAGGATGAGTAGCCTAAAATGATGTTTGTTTGACAACAACAAATGCCCGAGCACGCACTTATCCCGAAAATTGCTGATGGGATCCTTGGGCAGATGACACTGCAGGAGGCGATCGGGTTGTCCCCTCCCAGCCCCCAGACGTCGACCTGGCTATCGTGGCCCATCAACACTAGGCTACTCCCCGACTCCGACAGGAAGAACGGCCCGCCATCTGGGAGGCCACCGCCCCATGTCCCGTTTGCGCTTCCACGGCCATCGTACTCCAGATTGATTCGGCCGCTGTTGATGCGCACGGTTCCATTGGGGATGGAGATGTCGAGCACCTGCACCGTGCCATCACCGAGGAACAGCCTGGGCGGGTGGTATGAGTGGTCGCAGGTGAGGTTGAAGCCGACTGTGTGGTAGCAGCCGGGCTCCACCCCGAACGGGTACTCGATGCTGATGTTACCGCAGCTGGTGGTGCAGCTCTTGATTTTCTTCGCGGTTGGCACCGCGGGTTCTTCCGCCGCAGCCACCATCGCGGCCAGCAGCTGCAGAATCAGCAACTGAACATGCACTCTCCTGCTGCCCACTACCACCCTGACCAT
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| CDS seq | ATGGTCAGGGTGGTAGTGGGCAGCAGGAGAGTGCATGTTCAGTTGCTGATTCTGCAGCTGCTGGCCGCGATGGTGGCTGCGGCGGAAGAACCCGCGGTGCCAACCGCGAAGAAAATCAAGAGCTGCACCACCAGCTGCGGTAACATCAGCATCGAGTACCCGTTCGGGGTGGAGCCCGGCTGCTACCACACAGTCGGCTTCAACCTCACCTGCGACCACTCATACCACCCGCCCAGGCTGTTCCTCGGTGATGGCACGGTGCAGGTGCTCGACATCTCCATCCCCAATGGAACCGTGCGCATCAACAGCGGCCGAATCAATCTGGAGTACGATGGCCGTGGAAGCGCAAACGGGACATGGGGCGGTGGCCTCCCAGATGGCGGGCCGTTCTTCCTGTCGGAGTCGGGGAGTAGCCTAGTGTTGATGGGCCACGATAGCCAGGTCGACGTCTGGGGGCTGGGAGGGGACAACCCGATCGCCTCCTGCAGTGTCATCTGCCCAAGGATCCCATCAGCAATTTTCGGGATAAGTGCGTGCTCGGGCATTTGTTGTTGTCAAACAAACATCATTTTAGGCTACTCATCCTATCTCATCCAGATTCACGGTGATGCAAACTTTTTAAATATCTACATGGTGGACCAGGGATTCAACTATACCAATTTCATTAATTCCAATGTCGATCTCATTATTTTTGATTCCGACAGAGATCCGCAAGCGCTCCCAGCCTTGCTGGAATGGGTAATCAGTAATTCGACAAGTTATTGTCCTAGAAATTCATCTGCCCCCGAGTGTCGCAGTGCCCATAGCTCTTGCCAAGACACTGATGCTTGGGCAAACAACGGGTATCGGTGCAAGTACTCTTATGGTTATCAAGGCAATCCATACATCATTGATGGATGCAAAGATTTGCCTCTTCATGGATCTTCCTTTTCAGGGCTAAGCATAGCTCTAATAGTTTCTGGTGGATCAATTGTTCTTATTCTGGTACTTGCTACTCCCCTAGTAGCACGTGTGGTCAAGCAACGCAGGGAGAAAAAACTGAAAGAAAAGTTCTTTAAGCAAAATCATGGATTGCTACTGCAGCAGTTAATATCAAGAAACACAGATTTTGGTGAGCGAATGATAATTACCTTAGAGGAGCTCCAAAAGGCCACAAACAATTTTGATAGATCTTGCCAAGTCGGAGATGGAGGGCATGGAGTCGTGTTCAAGGGGATTCTAGACCTGAATGTTGTGGCCATAAAAAAATCAAAGATTATAGTTCAAAGAGAAATAGACAGAAGTTCCATTGTTGGTTATGAATTCATTTCACATGGGGCCCTTTATCATCATCTTCATGTCGATGGTCCAATCTCACTGTCATGGGATGATCGATTAAGGATTTCACTTGAGGTTGCTAGAGCTTTGTCCTATCTACACTCAGCTTCTTCAATGCCAATTTATCATAGAGATATTAAGTCCTCCAATATACTTCTTGATGATAGTTTAACAGCGAAGGTATCAGATTTTGGGGCTTCAAAGTACACCCCGATAGATCGATCTGAAATAACTACAACTGTTCAAGGAACAATTGGCTACTTAGATCCCATGTACTATTATATTGGTCGACTAACTGACAAGAGCGATGTTTTTAGTTTTGGAGTTCTTCTTGTGGAGTTGCTTACTCGAAAGAAACCTGTTGTTGACACGTTCGATGGTGATGGCCTTGTTTCACATTTTATTTTGCTGCTCTCAGAAGGAAACCTTATTAACATAATAGATCCTCAAGTCAAGGAGGAGGAAGATGGAGAAGTCCATGAAGTAGCTGCACTGTGTACTAAATTGAAAGGAGGAGAACGGCCTTCAATGAGAGAAGTAGAGATGGCACTGGAAAACATATTATCAAAAAAGGGCCCCTTCCATAAGGGAAATAGGGAATCAAGTAGACCCAGTAAAAATCAAATTTCAGCACTATACATGTCAATTGAAGGAGTTGCCACAGAAGCAAGTAGTCAATCCATGGAAGAGGAAATGCTATCGTTTCCTCGATAA
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| Protein seq | MVRVVVGSRRVHVQLLILQLLAAMVAAAEEPAVPTAKKIKSCTTSCGNISIEYPFGVEPGCYHTVGFNLTCDHSYHPPRLFLGDGTVQVLDISIPNGTVRINSGRINLEYDGRGSANGTWGGGLPDGGPFFLSESGSSLVLMGHDSQVDVWGLGGDNPIASCSVICPRIPSAIFGISACSGICCCQTNIILGYSSYLIQIHGDANFLNIYMVDQGFNYTNFINSNVDLIIFDSDRDPQALPALLEWVISNSTSYCPRNSSAPECRSAHSSCQDTDAWANNGYRCKYSYGYQGNPYIIDGCKDLPLHGSSFSGLSIALIVSGGSIVLILVLATPLVARVVKQRREKKLKEKFFKQNHGLLLQQLISRNTDFGERMIITLEELQKATNNFDRSCQVGDGGHGVVFKGILDLNVVAIKKSKIIVQREIDRSSIVGYEFISHGALYHHLHVDGPISLSWDDRLRISLEVARALSYLHSASSMPIYHRDIKSSNILLDDSLTAKVSDFGASKYTPIDRSEITTTVQGTIGYLDPMYYYIGRLTDKSDVFSFGVLLVELLTRKKPVVDTFDGDGLVSHFILLLSEGNLINIIDPQVKEEEDGEVHEVAALCTKLKGGERPSMREVEMALENILSKKGPFHKGNRESSRPSKNQISALYMSIEGVATEASSQSMEEEMLSFPR |
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| Function | Wall-associated receptor kinase 3 [UniProtKB/Swiss-Prot:Q9LMN8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0501000 | OsNip_08t0501000-00 | Chr08 | 24734910 | 24738361 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTCAGGGTGGTAGTGGGCAGCAGGAGAGTGCATGTTCAGTTGCTGATTCTGCAGCTGCTGGCCGCGATGGTGGCTGCGGCGGAAGAACCCGCGGTGCCAACCGCGAAGAAAATCAAGAGCTGCACCACCAGCTGCGGTAACATCAGCATCGAGTACCCGTTCGGGGTGGAGCCCGGCTGCTACCACACAGTCGGCTTCAACCTCACCTGCGACCACTCATACCACCCGCCCAGGCTGTTCCTCGGTGATGGCACGGTGCAGGTGCTCGACATCTCCATCCCCAATGGAACCGTGCGCATCAACAGCGGCCGAATCAATCTGGAGTACGATGGCCGTGGAAGCGCAAACGGGACATGGGGCGGTGGCCTCCCAGATGGCGGGCCGTTCTTCCTGTCGGAGTCGGGGAGTAGCCTAGTGTTGATGGGCCACGATAGCCAGGTCGACGTCTGGGGGCTGGGAGGGGACAACCCGATCGCCTCCTGCAGTGTCATCTGCCCAAGGATCCCATCAGCAATTTTCGGGATAAGTGCGTGCTCGGGCATTTGTTGTTGTCAAACAAACATCATTTTAGGCTACTCATCCTATCTCATCCAGATTCACGGTGATGCAAACTTTTTAAATATCTACATGGTGGACCAGGGATTCAACTATACCAATTTCATTAATTCCAATGTCGATCTCATTATTTTTGATTCCGACAGAGATCCGCAAGCGCTCCCAGCCTTGCTGGAATGGGTAATCAGTAATTCGACAAGTTATTGTCCTAGAAATTCATCTGCCCCCGAGTGTCGCAGTGCCCATAGCTCTTGCCAAGACACTGATGCTTGGGCAAACAACGGGTATCGGTGCAAGTACTCTTATGGTTATCAAGGCAATCCATACATCATTGATGGATGCAAAGATTTGCCTCTTCATGGATCTTCCTTTTCAGGGCTAAGCATAGCTCTAATAGTTTCTGGTGGATCAATTGTTCTTATTCTGGTACTTGCTACTCCCCTAGTAGCACGTGTGGTCAAGCAACGCAGGGAGAAAAAACTGAAAGAAAAGTTCTTTAAGCAAAATCATGGATTGCTACTGCAGCAGTTAATATCAAGAAACACAGATTTTGGTGAGCGAATGATAATTACCTTAGAGGAGCTCCAAAAGGCCACAAACAATTTTGATAGATCTTGCCAAGTCGGAGATGGAGGGCATGGAGTCGTGTTCAAGGGGATTCTAGACCTGAATGTTGTGGCCATAAAAAAATCAAAGATTATAGTTCAAAGAGAAATAGACAGAAGTTCCATTGTTGGTTATGAATTCATTTCACATGGGGCCCTTTATCATCATCTTCATGTCGATGGTCCAATCTCACTGTCATGGGATGATCGATTAAGGATTTCACTTGAGGTTGCTAGAGCTTTGTCCTATCTACACTCAGCTTCTTCAATGCCAATTTATCATAGAGATATTAAGTCCTCCAATATACTTCTTGATGATAGTTTAACAGCGAAGGTATCAGATTTTGGGGCTTCAAAGTACACCCCGATAGATCGATCTGAAATAACTACAACTGTTCAAGGAACAATTGGCTACTTAGATCCCATGTACTATTATATTGGTCGACTAACTGACAAGAGCGATGTTTTTAGTTTTGGAGTTCTTCTTGTGGAGTTGCTTACTCGAAAGAAACCTGTTGTTGACACGTTCGATGGTGATGGCCTTGTTTCACATTTTATTTTGCTGCTCTCAGAAGGAAACCTTATTAACATAATAGATCCTCAAGTCAAGGAGGAGGAAGATGGAGAAGTCCATGAAGTAGCTGCACTGTGTACTAAATTGAAAGGAGGAGAACGGCCTTCAATGAGAGAAGTAGAGATGGCACTGGAAAACATATTATCAAAAAAGGGCCCCTTCCATAAGGGAAATAGGGAATCAAGTAGACCCAGTAAAAATCAAATTTCAGCACTATACATGTCAATTGAAGGAGTTGCCACAGAAGCAAGTAGTCAATCCATGGAAGAGGAAATGCTATCGTTTCCTCGATAA
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| Protein seq | MVRVVVGSRRVHVQLLILQLLAAMVAAAEEPAVPTAKKIKSCTTSCGNISIEYPFGVEPGCYHTVGFNLTCDHSYHPPRLFLGDGTVQVLDISIPNGTVRINSGRINLEYDGRGSANGTWGGGLPDGGPFFLSESGSSLVLMGHDSQVDVWGLGGDNPIASCSVICPRIPSAIFGISACSGICCCQTNIILGYSSYLIQIHGDANFLNIYMVDQGFNYTNFINSNVDLIIFDSDRDPQALPALLEWVISNSTSYCPRNSSAPECRSAHSSCQDTDAWANNGYRCKYSYGYQGNPYIIDGCKDLPLHGSSFSGLSIALIVSGGSIVLILVLATPLVARVVKQRREKKLKEKFFKQNHGLLLQQLISRNTDFGERMIITLEELQKATNNFDRSCQVGDGGHGVVFKGILDLNVVAIKKSKIIVQREIDRSSIVGYEFISHGALYHHLHVDGPISLSWDDRLRISLEVARALSYLHSASSMPIYHRDIKSSNILLDDSLTAKVSDFGASKYTPIDRSEITTTVQGTIGYLDPMYYYIGRLTDKSDVFSFGVLLVELLTRKKPVVDTFDGDGLVSHFILLLSEGNLINIIDPQVKEEEDGEVHEVAALCTKLKGGERPSMREVEMALENILSKKGPFHKGNRESSRPSKNQISALYMSIEGVATEASSQSMEEEMLSFPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0482640 | SBH | 2.292330 | 0.959720 | 0.194306 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g39170 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0501000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021090 | SBH | 0.0 | 0.0 | 0.575890 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020990 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020880 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021100 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020970 | SBH | 0.0 | 0.000000 | 1.175692 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0394800 | RBH | 0.069682 | 0.5907 | 0.7766015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020860 | SBH | 0.0 | 0.000000 | 0.026833 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0414900 | RBH | 0.080256 | 0.345905 | 1.061677 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020180 | RBH | 0.075666 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020470 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020310 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021160 | SBH | 0.0 | 0.056039 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020510 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020660 | RBH | 0.0 | 0.0 | 0.367741 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020830 | RBH | 0.000000 | 0.000000 | 0.706948 |
