Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0393150 | OGI:01022150 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:18620062-18621478 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCACTTTTTCGACAATCTCTATCACACTGTTAGATGTTTTCTCATAAAAGAAATTCAAATAATCTCCTTTTCTTCTTGGATCTAACATTGTGGCAATGACAAGTGCAGAGTTAAACCCACTGTCCCAATATTTGACAAACTTTGAGAGCATAGCTGCAGCCAATACCTTTAAAATATCACTAGTCTGCCAATCAGGGTCATTCAATGCACGACGAATTTGTAGCACCAAGGGCAAGAACCTATGTGCTGTTGGTTTCCTATCTGCTGACACCGATAATGTGGCTTCTTAAATTGATTCAACTTTCTGCCATTCTAGTTCAGTAGGTGCAACTTCACCATGTTGATTTGCATAGCTATCCAGGACAGATCTGTACATTAATCCTTCTACAATCATTTTATAGGTGGAATTCCATCTAGTCGGTGTATCAAAAGAAAAACTCAACTTCGAAGGAAGATTTTTCGAGTTTGCCATAGAATTGAAATCTTGCATTCTTGATACTGAAGAATCTAAATGCTTCAACAACTCACGTAGCTTGTGTATTGTAGGTTTAATTATCTTCATACCATCCTGAACCAAAATAATTAGGATATGGGCACAACATCTAACATGCAAATGCTGACCCTCAAACATCAATGCATTCTTGTGATTCTTTATCAACTCTTGACATGCAGAATTGTTATTATTGGCATTATCTAAAGTTATAGTAAACAGTTTGCTTCTAATGCCCCAATATGTCAAGCAACTCATTATAGCTTCTTCAATGGCGAATCCCGTGTGGGGATACCTCAATTCCTTAAAGCTTATAATTTTCTTCTTAATGTTAAACTCTCTATCAATATAGTGTGCTGTGACAACCATGTAGCCTATATTTTGAATTGAAATCCACATATCGGATGTTAGACATACGTGCGAATCAAGATTATGTATTTCAGCATGCAAGTCTTCCCTCATTCGCTCATACAAGTTAAAGGCATCATCACGAAGTGTTTGACGCCCCACAACTTTGAAAGTTGGCTGCATGGACTCCACCCACTCCAAAAAATAAGGATCCTCAATTTTCTTGAATGGCACCTCTGCATGAATGAAGAATCTGACCATTAGCTCCCGGCTTCTCTTGGGAACAAACACGAAACCTTCCCTAGTCTGTTTCTTAATTGTTGCAAGGAAGTTGATTCTAGCATCACCATCAATAGCTGGACATGATTCGGCTATGTGATTAATAAGGTGACTTGTTCCTGACTTTTTGGCGGCTGTCAATCTTAAGCTACAATATTTGCATTGAGTCTTGGGGACACCATCTATCATTACAACCTCTTGCTGAAAGTGTTCCCATACTTTAGCTCTCTTACGTGTTCTTGAAGATTGATTATTATTTGGACTATTAGTACCTGAACTCTCTGACATTTGTATGGACAT
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| CDS seq | ATGTCCATACAAATGTCAGAGAGTTCAGGTACTAATAGTCCAAATAATAATCAATCTTCAAGAACACGTAAGAGAGCTAAAGTATGGGAACACTTTCAGCAAGAGGTTGTAATGATAGATGGTGTCCCCAAGACTCAATGCAAATATTGTAGCTTAAGATTGACAGCCGCCAAAAAGTCAGGAACAAGTCACCTTATTAATCACATAGCCGAATCATGTCCAGCTATTGATGGTGATGCTAGAATCAACTTCCTTGCAACAATTAAGAAACAGACTAGGGAAGGTTTCGTGTTTGTTCCCAAGAGAAGCCGGGAGCTAATGGTCAGATTCTTCATTCATGCAGAGGTGCCATTCAAGAAAATTGAGGATCCTTATTTTTTGGAGTGGGTGGAGTCCATGCAGCCAACTTTCAAAGTTGTGGGGCGTCAAACACTTCGTGATGATGCCTTTAACTTGTATGAGCGAATGAGGGAAGACTTGCATGCTGAAATACATAATCTTGATTCGCACGTATGTCTAACATCCGATATGTGGATTTCAATTCAAAATATAGGCTACATGGTTGTCACAGCACACTATATTGATAGAGAGTTTAACATTAAGAAGAAAATTATAAGCTTTAAGGAATTGAGGTATCCCCACACGGGATTCGCCATTGAAGAAGCTATAATGAGTTGCTTGACATATTGGGGCATTAGAAGCAAACTGTTTACTATAACTTTAGATAATGCCAATAATAACAATTCTGCATGTCAAGAGTTGATAAAGAATCACAAGAATGCATTGATGTTTGAGGGTCAGCATTTGCATGTTAGATGTTGTGCCCATATCCTAATTATTTTGGTTCAGGATGGTATGAAGATAATTAAACCTACAATACACAAGCTACGTGAGTTGTTGAAGCATTTAGATTCTTCAGTATCAAGAATGCAAGATTTCAATTCTATGGCAAACTCGAAAAATCTTCCTTCGAAGTTGAGTTTTTCTTTTGATACACCGACTAGATGGAATTCCACCTATAAAATGATTGTAGAAGGATTAATGTACAGATCTGTCCTGGATAGCTATGCAAATCAACATGGTGAAGTTGCACCTACTGAACTAGAATGGCAGAAAGTTGAATCAATTTAA
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| Protein seq | MSIQMSESSGTNSPNNNQSSRTRKRAKVWEHFQQEVVMIDGVPKTQCKYCSLRLTAAKKSGTSHLINHIAESCPAIDGDARINFLATIKKQTREGFVFVPKRSRELMVRFFIHAEVPFKKIEDPYFLEWVESMQPTFKVVGRQTLRDDAFNLYERMREDLHAEIHNLDSHVCLTSDMWISIQNIGYMVVTAHYIDREFNIKKKIISFKELRYPHTGFAIEEAIMSCLTYWGIRSKLFTITLDNANNNNSACQELIKNHKNALMFEGQHLHVRCCAHILIILVQDGMKIIKPTIHKLRELLKHLDSSVSRMQDFNSMANSKNLPSKLSFSFDTPTRWNSTYKMIVEGLMYRSVLDSYANQHGEVAPTELEWQKVESI |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0393150 | OsNip_08t0393150-00 | Chr08 | 18620062 | 18621478 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCCATACAAATGTCAGAGAGTTCAGGTACTAATAGTCCAAATAATAATCAATCTTCAAGAACACGTAAGAGAGCTAAAGTATGGGAACACTTTCAGCAAGAGGTTGTAATGATAGATGGTGTCCCCAAGACTCAATGCAAATATTGTAGCTTAAGATTGACAGCCGCCAAAAAGTCAGGAACAAGTCACCTTATTAATCACATAGCCGAATCATGTCCAGCTATTGATGGTGATGCTAGAATCAACTTCCTTGCAACAATTAAGAAACAGACTAGGGAAGGTTTCGTGTTTGTTCCCAAGAGAAGCCGGGAGCTAATGGTCAGATTCTTCATTCATGCAGAGGTGCCATTCAAGAAAATTGAGGATCCTTATTTTTTGGAGTGGGTGGAGTCCATGCAGCCAACTTTCAAAGTTGTGGGGCGTCAAACACTTCGTGATGATGCCTTTAACTTGTATGAGCGAATGAGGGAAGACTTGCATGCTGAAATACATAATCTTGATTCGCACGTATGTCTAACATCCGATATGTGGATTTCAATTCAAAATATAGGCTACATGGTTGTCACAGCACACTATATTGATAGAGAGTTTAACATTAAGAAGAAAATTATAAGCTTTAAGGAATTGAGGTATCCCCACACGGGATTCGCCATTGAAGAAGCTATAATGAGTTGCTTGACATATTGGGGCATTAGAAGCAAACTGTTTACTATAACTTTAGATAATGCCAATAATAACAATTCTGCATGTCAAGAGTTGATAAAGAATCACAAGAATGCATTGATGTTTGAGGGTCAGCATTTGCATGTTAGATGTTGTGCCCATATCCTAATTATTTTGGTTCAGGATGGTATGAAGATAATTAAACCTACAATACACAAGCTACGTGAGTTGTTGAAGCATTTAGATTCTTCAGTATCAAGAATGCAAGATTTCAATTCTATGGCAAACTCGAAAAATCTTCCTTCGAAGTTGAGTTTTTCTTTTGATACACCGACTAGATGGAATTCCACCTATAAAATGATTGTAGAAGGATTAATGTACAGATCTGTCCTGGATAGCTATGCAAATCAACATGGTGAAGTTGCACCTACTGAACTAGAATGGCAGAAAGTTGAATCAATTTAA
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| Protein seq | MSIQMSESSGTNSPNNNQSSRTRKRAKVWEHFQQEVVMIDGVPKTQCKYCSLRLTAAKKSGTSHLINHIAESCPAIDGDARINFLATIKKQTREGFVFVPKRSRELMVRFFIHAEVPFKKIEDPYFLEWVESMQPTFKVVGRQTLRDDAFNLYERMREDLHAEIHNLDSHVCLTSDMWISIQNIGYMVVTAHYIDREFNIKKKIISFKELRYPHTGFAIEEAIMSCLTYWGIRSKLFTITLDNANNNNSACQELIKNHKNALMFEGQHLHVRCCAHILIILVQDGMKIIKPTIHKLRELLKHLDSSVSRMQDFNSMANSKNLPSKLSFSFDTPTRWNSTYKMIVEGLMYRSVLDSYANQHGEVAPTELEWQKVESI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0575500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g30270 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0393150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006340 | SBH | 0.0 | 0.000000 | 0.151206 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011720 | RBH | 0.446715 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0147400 | SBH | 0.006268 | 0 | 0.0020685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0256500 | SBH | 0 | 0 | 0.0069385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006020 | SBH | 0.117423 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006100 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006220 | SBH | 0.0 | 0.843899 | 0.164957 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006070 | SBH | 0.0 | 2.270802 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006070 | SBH | 0.122131 | 1.589484 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005960 | SBH | 0.275209 | 12.317497 | 0.911065 |
