Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_08g0011720 | OGI:08041750 | 3/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr08:14369707-14378608 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gacgatcaaacctgtgaggattaatattcgtcctcatggagactagtcatgcaaactaaaattttcctgacaagcaagttgtaacgaaattttccagatggtttctggctgtcagggctagttgagtttgtggtagtgcatgtttagatcttgcttctttcttctctcccgtcgttggatctccagcctcttcttcatgggcaaccatccgatgaagacagcgaactagtcggcctcctccctcctccgccgaagcatagtggcacgctggtgcaggagctccagcgaggagggCtcctcccgacgcacgcgtataccgtcgatggatatgtcgctgtgctcgtgttgttcgcacaatgccagcattcaggcacccttcaccataaaccaaaattcctcgaaaattaaacctttttgtcacaaaagaaatagccgataatgATaattagtgcctatattagttataggctatagttgttaagaaagatgaaagatacgccaatgggaggtgcactagatctaacgtaatcagctactagaagttagtaaaattcttaaccttagTtttttttttttggttgttgtttgtcatggcgagggtcttaaaaattgctagaggtttaaaatttacccattcgacatatatccaagattgaacataagctgtcgaaagggcaaatttcaaaccaagattgaacataagctgtcgaaagggcaaatttcaaaccttgagtaaTttttaagacaccacggtattatcatgtatcatttaatttttgctgttaattctttcattatttagaatatatacgtacaatcatgtacaccactatgcatatgcacactcatataacagtgagagctagtgcaccctctttttttaacacacgataaagaggccgattccaataacaaatccatAaatatagctaaactctcattaaaaagagcatccatgtgtatagttgtgaacatcatttattgtatctccaggtgttatactaaagtaatactgggcctgttcggctgcactacgggggctacgatgctgcagcctcgcacagtattttatgtagcgcacactactagaaaaatagttttttataggcagtcaaaaacagttatcgcaggcgggggagacaaccgccgctatcctattgcctgtgaaaataggtgatttttgcacgcgggtccgcgacccAcctgcgaaaataatttcagggaaCaaaaaaaaaaaatccggcgctacccgcaggcgacgccgctggcgccagcatccccctctggccgacggctctccacctctgtccggcgccgctgcccgagggcgaggggagcgccgcctttgccgccactgccggctggctcccttctcagatctgggaggggagcggctggtgctgtctgtgccgccgcggccgtcggctcctcttccgccgctggcgtctagggggaacgaaaggagaggattagtgcccagagccgccgcctcctcctccttgcgtgcgccgagacgccgacggctgccggttgctcctctccttgcgcgcgccgaccaggccatcggttcctcctcctctgacgtcgccgcggtgtcacgccctgaagttccacctcccttgctttaaattcataaaataaatcgcctaaagaagttgcttcaaattaacctagagttgaatccttaattaataaatgcatttaataatcaaattcggcgtggtggaaTtttttttgagttccccatgctcaaatatattaacagaatttttagtggaattttcagagccttggaaataattttaaccaattaaaaatgagcatgtgcaatatttaatcctaggaaatccgttttctttttctccttttcttttcctcctttttCcctcttcttggGCTgtcggcccatcctttctcccgcacctctccctccttgctgggccggcccaactcccctcccctctctctagggtgccgacaggtggggcccacctgtcggtcatcccctacctccagccgcccgcgcccaagctggcaaccgccgcccAcgccgccgctttccccgcttCccgtgcctcactccgcccatgctccgcgcccacgtcgccgcccaccttccccacgccttgccgcctcctCGcgcgcgcccgagagggcgggattcgattttgaatccgCccctctctctctccaccccacgtcgccggcgccactcctcctccaaatccggccacctcccggcctcgcccgcttctcactcggctataaaacgccttccccgagctccctctctcgtttcccctactcgccgccttctcccgtgctctccaccgcgcccgcgccgctcgccccttgcgccgccgcctgccactgcactccggccgcgcgccgccgccgctagcgccgtcgccacgccacctgccgccgcctctagctccgccgacacaagggctacctcggccgccactcagttgccgcctactgccgcctccaaccgccactagccgtcgatagtgccgttgccgcgccgctccgttgccgccgttggcctcgcgggtccgagggccgcctcgtccatcccgcgcaccccgccgtccgccgcttgccgccggtgttcgccgtcgtcttcccccactccggccaactcacggtgaggcgctccctcctgctcgtttctcctccctctcccccctagcgccaggccgcgccgctgcttcgcccgtgcgccgtcgccttcggccgacgccgctgccacccgcgccgccggttgccatcgccggcgaccgctCGCcgccgccgccctcgccataaccggccagtcggccttgaggccaagccgagcccggccagcacctccctcccctcccctttgagccaccgcctggtgggacccacccgccaggcgcctcctcccctcttttggagccgctgccagtgggacccaccagccacacccccctataggtgtccaaacgggcggcacggcccggcccggcacgggcacgggtccggcacggcccgtttcggcacggcccgttaggcacggctgatgaaacgggccgtgccgtgccggcccacgtgccaagccgccggcccaagcacggcccgtggatggccgggccgtgcccgtgccggcacggcacgcctgcggcccacgggccgttcggggcacgacgttttttttAaaaaaaaaagcaaaggaaatgtataaggaaaaaaaaattaaaaatggaaataaaatgtttaaaaaaaagtaatgatttactaatgttaaaaaatgaaaaaatggtatttaaaaaatggaaataaaagttttttaaaaaagtaatgatttgctaatgttaaaaaaaagaaaaaatggtatttttttgttgtgttgaaaaatttAaaaatatagattgtgattcattattttgaaataatttaaagataaatccacacttgcgaaaatattgcaaaagaatttgttaaaaatagtaatgacctttattgatgtttatatcattacaggatacaatgatacatgctgcctcgttaaaaactttgtcatgtaaaaactcataggggaaaatgagaaaaccatgacaaagaaaagagtacagctcaaaggtcagaactacttctaacaaaattctactagggttggtctggatccaggtagagttgctcgaactgggcggccaattcttggttgtccgcagtgtattgggcatgttgtcgagcaagctcccagtctttaacgcttagtagcatttcgacgtggtcgctgcgcagagtcgtcctccggtcttcgatgattcggccgcatagactgaaggccgattcggaggacaccgtcgacacgggcaccgtcaacacatcccgtgctagttttgaaagcacatgatatgttatcttgtggtcattccaccacccgaggacgttgaaatcttgtgcttcgtggtggatggcgtcgctgtccaaataaccggacaactcttcggccacaacatgcgaagaggcgtctccacttgtagccgacgaactgccaccaccttggattgaacttgaagacgatccaccccaaatcctaccccactgtatcttcttcttacctgtagtggggataggagggggtctctgctggcgaacttcctgaaactttacttcatatcttccaaaaacctcatataatttacgtctaacctcagtataaaaagaactataatctacacctatagtatctccaacaagtgataaaatagcagacaatccccttaatttacacctaggatctaaaacaaagcaaaagcatacaacataggtatatttttccaatatttcaaatatttttgtttcatgtgaaagacaggttcagttagaacgtcatcattttcgtattctttaaataaagtagcaatttcaagaaggttgtgtattattagcagttggataataaacttgtgacaaagttagagtacaatcataaaaagtttctagaaattggtgaaatttttggacaattgcccaaacatgctcgttcagtactgaagacccgtcactgtttcttgggccaccacgtgactgaacaaaatcagaaagtaaactactataaggtaaaacaacttttaacattaaatacgttgcattccaccgatgctctgcatcggtggcaaacttacgagctttcacaccggccgcattgcaaaacctcttccatgcagcaatccgcgggttagaagcagttaaccacgcgattgcttgacgaacagcatcgatgtggtcacctaccctcttcatgccagtcttaacaatcaaattaattatatgacatgcacaacgctgatggagtagaaaagattgagcatacacacaaaataaaggttgcaatatttcaatagcctagaattagcagatgcattatctagggtgacagcaaatattttatcagcaagattaaattcattaattacttccctaattctttcagctatgttttctcctgtatgtgagacatctattaacctaagccctaaaactctcttttgtaattgccaatcatcacaaaaatgaacaactacgctaagataatcctctctagctactactccatatatctgaagtaacactaacagagaaagtacatgtactaaacagttccttaagtgcagtgcttccttgtgataaacattctctaaatctctagttgatgtttgcctactcacagctttaaacctagggttatgagattgctgaatgtaatgttcaaaagcaggggactccccaaagttcaggggtaaatcttgcctggcgattaaccggacaagagattcccgagcaaccatgggatcgtactcccaactgcgtaccgtaccgtctgggtttaccataagttgctgctgccggagttgtattccttgcttcttggcacacgactccgcatggcgcttgaggtgacctgtaccaccagaagaacgagcagataaaatttgcctacatattctacaacgggctttcgatacctcccttccgtggggcatgtttcctttatctcgtcgaagttttgccacacaacggaggttctcgatctcttcgagccggtgtgtgtcgaaacacttccgctcgcggttccggaaaatccttccgaagctgtcgcgcctgaaccggtacctcctcaacgacagccgtatgaaccggtacctcctccacagatggtggagttggagccgatccggaggtaccgtcaaaccccgacatgtagttggggtcgaatcacccaaggtgaacgacggcgactggtatggaaagttcggatccattctgaaaatttaaaccgacataaacaaattttcgaatatttattgaattcacaaacacaatacaaataatacacaaatttgaatattacttacatttccaaccgcgagctcttcaaacctctgcgatcaaactgttgaactacgaaactaattttgatttttgacaaaatttgagcaaattttgtcaaaatcaaaaaaaaatgcacacttgagaacaaagagagcacttaaaacacttgagagcacaagatgaggagtgtgggatgaggagaaatggctggggttcatgccctaTttatagggcgaaatttgagattttttggaaTtttttcgaaatttttatgaattttttagcctcccaacggttattttcaaatttgaacggtcaaatagccgttagtgccacgtggcgccttcccattcgaccgccacccaccctgtccgcgcctgacgggccgccggcgaaacgggccgtgccgtgccgcgggccgtgccgtgccgggcctgctacagtagtcgtgccgtgccgtgccggcccgcgggctcggccagcggcccaagcacggcacggctactcgtgccgtgccggcacggcccgttactgtagcaggccgtgccgggccgtgcctgctacaggttcggccgtgCcccgggccgcccgtttggcccggcccgtttggccacctctacacccccccccccccgccgctgaagtcagccctgggcaatattgcacaataaataattaatgacttttttcTtttatagtaaaaacacaaataatcttcttaaattcataactaactagccacatggttgcgctttgcgcaactctaaatacatgtttaagaacctgtgtcaatggcatccacccatacacaaacacaatcatctacgtggccaagacccctgagtaacaacttgatcctaagcatttatattgtgatgcgtagtagtacattataatgtacatgcccacaaaaaatttgatcccaaatctaataaaataacaaaaacaaatgtagtagctttgtgttcttccaccaaatgcatggtggtaCcgtggtattcacctggaaacataaaaaATataatctttttaagagcaaatcattgattagcaggaccagttgatttatgttcttccaccaaatgcacgttggtattcacccacaaaaacaaaaagtatgaaattcttatgagctaatctcatatgagaaggaccagtaaggacatagtctcatgtaaaaatgatagaaagatatgctcctcaatttgtacaatgattaatgagtatggaatactacagtattacagatatagataggtgtcatatgataatccaatatctaaagctctgccaaatattccaatagcagtatgcatggtattgcctttggattgataagaaatgcacctaggcctattaggacagtaaagaatctacgggttcgtggaaattaccataataccgttaattaaacttctaagcaagatttatgggtggagcataatcacaaagctagcaattaacgtattataattctttcttgtaaatatgccttgtttaattttaaacgagaacccattcttcctgtcgacacatcattcacacttctacacacacacaaaatatcattgaaactcattgctcttatagctcaattctatgcttgatcaagtagtctaagacattttactggcacttggaaaaataaggataggtgtaaatattacttaccgatggtctgtacagataatttatttctccctccgctgcgtacccaagcataaggccccaccactgatgtcgatgatttaattacaacgctgcagccgtgcagtgcctgctgatgcaaaataaaataggatcagaatgaagcatcctaatacgggccgatgttggccaaaactaCATcttgtgtgagttaaccttttttgtttaaacagttagggttatccctaaatcaacatgtgctactgaactttctactgttgcaggcgcagggaaaaaTaatttcagtcgagatgtcttcagtagcagcgatataaataacttctagaaaaaaattaaataataggaatcaggaaggctataccaactaaagctggtacccgaataattatcctttttaatagtagtgcacacaatttagcaagatagaagtgtatacattattgcagcccttatgtaaactgctgaaatcctttccatgagcaaatatttttctaagtcagtcataaatgaagatagtaatccactctccatgaatagattattagtgtaattaagcattggtgacttgagctgtacagtatatgcatctgtaaattaatactaactataatcgatttacatgagtctctaatttgtctggtccctctgaagctaaagctgggatttttcttttggtgtatttgTttgtgattcatgaaacatttagatacacttcatcatctgttgtgcgataccttagagaatcatttactttgagtataggtaaacagatctacattctacaaaataTttttatttgctgatacttgcagttctactcagttgtcccaaacttgattttctcaattgtaattatagccaatcatggagcctaaattgatacgatttttgggcttatgaaataaagcctaataaagataattaatattggaattcataaggtgcatacatataatacaaatcaatatagtagtatttgaaaggctaacatccaatcaacagtcaagaaaggaagatagagaaggaaacagagaatgaggaatagagaagagagtgaccttggttgttctgccctggataccgatttggtgaataggtgtggacgcagctcctgcggataccctcctcctcgccatcgctattcatctgtcatcccttgccccccttcttcagggtagcgggagattagaggtggatgtgatgcgccggtgccggtggggtatacggcggcggcaggggtgggatggagccgcggtgatgaggggatgagtaacgccggcaatggagacagagaggactagagggggaggtagcggcggcttgggagaagaggcggcgcgcggcggctgggcctcaggagcggagg
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| CDS seq | atggatccgaactttccataccagtcgccgtcgttcaccttgggtgattcgaccccaactacatgtcggggtttgacggtacctccggatcggctccaactccaccatctgtggaggaggtaccggttcatacggctgtcgttgaggaggtaccggttcaggcgcgacagcttcggaaggattttccggaaccgcgagcggaagtgtttcgacacacaccggctcgaagagatcgagaacctccgttgtgtggcaaaacttcgacgagataaaggaaacatgccccacggaagggaggtatcgaaagcccgttgtagaatatgtaggcaaattttatctgctcgttcttctggtggtacaggtcacctcaagcgccatgcggagtcgtgtgccaagaagcaaggaatacaactccggcagcagcaacttatggtaaacccagacggtacggtacgcagttgggagtacgatcccatggttgctcgggaatctcttgtccggttaatcgccaggcaagatttacccctgaactttggggagtcccctgcttttgaacattacattcagcaatctcataaccctaggtttaaagctgtgagtaggcaaacatcaactagagatttagagaatgtttatcacaaggaagcactgcacttaaggaactgtttagtacatgtactttctctgttagtgttacttcagatatatggagtagtagctagagaggattatcttagcgtagttgttcatttttgtgatgattggcaattacaaaagagagttttagggcttaggttaatagatgtctcacatacaggagaaaacatagctgaaagaattagggaagtaattaatgaatttaatcttgctgataaaatatttgctgtcaccctagataatgcatctgctaattctaggctattgaaatattgcaacctttattttgtgtgtatgctcaatcttttctactccatcagcgttgtgcatgtc
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| Protein seq | MDPNFPYQSPSFTLGDSTPTTCRGLTVPPDRLQLHHLWRRYRFIRLSLRRYRFRRDSFGRIFRNRERKCFDTHRLEEIENLRCVAKLRRDKGNMPHGREVSKARCRICRQILSARSSGGTGHLKRHAESCAKKQGIQLRQQQLMVNPDGTVRSWEYDPMVARESLVRLIARQDLPLNFGESPAFEHYIQQSHNPRFKAVSRQTSTRDLENVYHKEALHLRNCLVHVLSLLVLLQIYGVVAREDYLSVVVHFCDDWQLQKRVLGLRLIDVSHTGENIAERIREVINEFNLADKIFAVTLDNASANSRLLKYCNLYFVCMLNLFYSISVVHV |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 1 [UniProtKB/Swiss-Prot:B9FJG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0011720 | OsCMeo_08g0011720.01 | Chr08 | 14369707 | 14378608 | - | NAM | ||
| CDS seq | atggcgaggaggagggtatccgcaggagctgcgtccacacctattcaccaaatcggtatccagggcagaacaaccaaggcactgcacggctgcagcgttgtaattaaatcatcgacatcagtggtggggccttatgcttgggtacgcagcggagggagaaataaattatctgtacagaccatcgggtgcctgaatgctggcattgtgcgaacaacacgagcacagcgacatatccatcgacggtatacgcgtgcgtcgggaggaGccctcctcgctggagctcctgcaccagcgtgccactatgcttcggcggaggagggaggaggccgactagttcgctgtcttcatcggatggttgcccatgaagaagaggctggagatccaacgacgggagagaagaaagaagcaagatctaaacatgcactaccacaaactcaactagccctgacagccagaaaccatctggaaaatttcgttacaacttgcttgtcaggaaaattttag
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| Protein seq | MARRRVSAGAASTPIHQIGIQGRTTKALHGCSVVIKSSTSVVGPYAWVRSGGRNKLSVQTIGCLNAGIVRTTRAQRHIHRRYTRASGGALLAGAPAPACHYASAEEGGGRLVRCLHRMVAHEEEAGDPTTGEKKEARSKHALPQTQLALTARNHLENFVTTCLSGKF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0011720 | OsCMeo_08g0011720.02 | Chr08 | 14369932 | 14378608 | - | NAM | ||
| CDS seq | atggcgaggaggagggtatccgcaggagctgcgtccacacctattcaccaaatcggtatccagggcagaacaaccaaggcactgcacggctgcagcgttgtaattaaatcatcgacatcagtggtggggccttatgcttgggtgaataccacgcacagcgacatatccatcgacggtatacgcgtgcgtcgggaggaGccctcctcgctggagctcctgcaccagcgtgccactatgcttcggcggaggagggaggaggccgactag
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| Protein seq | MARRRVSAGAASTPIHQIGIQGRTTKALHGCSVVIKSSTSVVGPYAWVNTTHSDISIDGIRVRREEPSSLELLHQRATMLRRRREEAD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_08g0011720 | OsCMeo_08g0011720.03 | Chr08 | 14373176 | 14378608 | - | IsoSeq | ||
| CDS seq | atggatccgaactttccataccagtcgccgtcgttcaccttgggtgattcgaccccaactacatgtcggggtttgacggtacctccggatcggctccaactccaccatctgtggaggaggtaccggttcatacggctgtcgttgaggaggtaccggttcaggcgcgacagcttcggaaggattttccggaaccgcgagcggaagtgtttcgacacacaccggctcgaagagatcgagaacctccgttgtgtggcaaaacttcgacgagataaaggaaacatgccccacggaagggaggtatcgaaagcccgttgtagaatatgtaggcaaattttatctgctcgttcttctggtggtacaggtcacctcaagcgccatgcggagtcgtgtgccaagaagcaaggaatacaactccggcagcagcaacttatggtaaacccagacggtacggtacgcagttgggagtacgatcccatggttgctcgggaatctcttgtccggttaatcgccaggcaagatttacccctgaactttggggagtcccctgcttttgaacattacattcagcaatctcataaccctaggtttaaagctgtgagtaggcaaacatcaactagagatttagagaatgtttatcacaaggaagcactgcacttaaggaactgtttagtacatgtactttctctgttagtgttacttcagatatatggagtagtagctagagaggattatcttagcgtagttgttcatttttgtgatgattggcaattacaaaagagagttttagggcttaggttaatagatgtctcacatacaggagaaaacatagctgaaagaattagggaagtaattaatgaatttaatcttgctgataaaatatttgctgtcaccctagataatgcatctgctaattctaggctattgaaatattgcaacctttattttgtgtgtatgctcaatcttttctactccatcagcgttgtgcatgtc
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| Protein seq | MDPNFPYQSPSFTLGDSTPTTCRGLTVPPDRLQLHHLWRRYRFIRLSLRRYRFRRDSFGRIFRNRERKCFDTHRLEEIENLRCVAKLRRDKGNMPHGREVSKARCRICRQILSARSSGGTGHLKRHAESCAKKQGIQLRQQQLMVNPDGTVRSWEYDPMVARESLVRLIARQDLPLNFGESPAFEHYIQQSHNPRFKAVSRQTSTRDLENVYHKEALHLRNCLVHVLSLLVLLQIYGVVAREDYLSVVVHFCDDWQLQKRVLGLRLIDVSHTGENIAERIREVINEFNLADKIFAVTLDNASANSRLLKYCNLYFVCMLNLFYSISVVHV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr08 | 14369707 | 14377246 | - | OsCMeo_08g0011720.01 | OsCMeo_08g0011720.01,OsCMeo_08g0011720.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.446715 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0393150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g23920 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0393150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006400 | SBH | 0.110099 | 4.927837 | 1.164720 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006360 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006340 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006080 | SBH | 0.0 | 0.092984 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0240800 | RBH | 0 | 0.087685 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006050 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006100 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006230 | SBH | 0.0 | 0.768632 | 0.295667 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006070 | SBH | 0.0 | 2.270802 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
