Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0247600 | OGI:08025640 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:9001801-9005304 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGACTGCAACCTCTCAACCTCCTTACTCTAACCATGGCAATCAAGAGGACATGGCAACTTTGGTTGCTCTCTCTTCTCACACATGCCATCCTATTGTTCACAGCCAGCTCTCAGTCCATCAATGGAGATGACCTCTCAGCACTCCTGTCATTCAAATCCCTCATAAGGAACGACCCAAGAGAGGTGCTGTCCTCGTGGGACACCAGCAGCAACACTACCAACATGACAGCACCTGTCTTCTGCCGATGGACCGGCATTTCCTGCAACGATCGCCGGCATCCAGGTCGTGTTACCACCCTCAATCTGAGCGATGCCGGCCTAGTCGGCACCATATCCCAGCAGCTTGGAAACCTGACCCACCTCCGTGTCCTTGATCTGTCAACCAACAGTCTTGATGGAGATATCCCAATCAGCCTTGGCGGTTGCCCAAAGCTTCATGCCATGAACTTGAGCATGAACCATCTGTCAGGTAACATCCCTGCTGATCTTGGACAGTTATCAAAGCTTGTGGTTTTCAGTGTCGGCCACAACAATCTTACCGGTGATATTCCCCAAGTCACTCTCCAACGTCAAGAGGAACTTCATCCATGGCCAAGATTTGAGTTGGATGGGCAACCTCACATCATTGAGAGACTTTATTCTTGAAGGCAACATTTTCACTGGTAACATCCCTGAAACTTTTGGTAAGATACTTAACCTTACTTACTTCAGTGTCCAAAATAATCAATTGGAAGGCCATGTTCCTCTATCAATCTTCAATATTTCTTCCATAAGAATCTTGGATCTTGGCTTCAATAGACTGTCAGGATCACATCCACTCGATATCGGCATTAAACTTCCTAGGATAAGTCGTTTTAACACAATTAATAACCGTTTCGAGGGTATAATACCACCCACCTTGTCAAATGCATCTGCACTTGAAGTATTGCTTCTTCATGGAAACAACTACCATGGCATTATTCCTAGGGAAATTGGCATCCATGGTAACCTGAAGGTATTTGTGTTAGGATACAACGCGCTCCAAGCCACACGATCTAGTGATTGGGAATTTATGACATCACTGACCAACTGTAGCAGCTTAACAAGGCTAGATGTTGCACACAAAAACCTCGTTGGTGAAATGCCAATTAACATTGCCAACCTGAGCAAAGAGCTCATAGGGATTTACCTAAGTGAAAACCAAATAACTGGGACCATACCTGAAGATTTATGGAAGCTCAATAAACTTACTTCTCTCAACCTGTCCTGCAACCTCTTCACAGGAACCTTACCTCCTGATATTGGCCGCCTTCCAATAATCAATTCTATCTTTATGTCACATAATAGAATCACTGGGCAGATTCCACAACCATTAGGCAATATCTCACAGTTGATCTTTCTATCTCTGTCTAATAATCTTCTGGATGGCAGCATTCCAATTAGCCTTGGGAACCTCACAAAACTTAATCTCTTGGATCTTTCCAGTAATGCCTTGATGGGCCAAATCCCACAAGAGATACTTACAATACCTTCCCTTACCTTACTTCTCAGCCTCTCCAACAATGCTCTAAGTGGCTCCATTCCAACACAGATTGGGCACTTGAACAACCTCATCAAAATGGACCTCTCAATGAATAAGCTATCTGGTGAAATCCCAAAAGCTATTGGCAGCTGTGTCCAATTGAGTTTCCTAAATTTTTATAGAAACCTTCTCCAAGGACAAATCCCAGAAAGCCTGAACAATTTGAGGAGCCTTGAAACCCTTGATCTGTCTAACAACAACTTGGCAGGTCCTGTACCTTTATTTCTTGCAAACTTCACGCTCCTAACTAATCTAAACCTCTCCTTCAACAAACTGTCAGGTCCTGTTCCAAATATAGGGATTTTTTGTAATGCCACTATAGTGTCAATCTCAGGTAATAGAATGCTATGAGGTGGCCCTCCATACTTGCAGTTCCCTTCATGCTCATCTGAAGATTCTAACCATGCTTCAGTGCATCGACTACATGTCTTAATCTTTTGCATTGCTGGAACGTTGATTTTCTCTTTGTTTTGTATGACTGCATATTGCTTCATTAAGACAAGGATGAAACCTAACATCGTTGATAATGAAAACCCATTTCTTTATGAGACGAATGAGAGGATATCTTATGCCGAACTACAAGCAGCAACCGAGTCATTCTCACCGGCAAATTTGATTGGTTCTGGAAGCTTCGGCAATGTATACATTGGAAATCTAATTATTGATCAGAATCTAGTGCCTGTTGCAATCAAAGTTCTTAATCTTGACCAAAGAGGAGCCAGCAGAAGTTTCCTGAGCGAGTGTGATGCTCTTAGGAGAATTCGACACCGGAAACTTGTCAAGGTGATCACTGTCTGCAGTGGCTTAGACCAAAATGGTGATGAATTCAAGGCACTTGTCCTAGAATTCATTTGCAATGGAAGTTTGGATGAGTGGCTGCATGCAACAAGTACAACAACCAGCACAAGCTACAGAAAGCTAAATATGGTGGAAAGGCTGCATATTGCTGTTGATGTTGCAGAGGCATTGGAATATCTTCACCATCATATTGTGCCGCCGATAGTTCACTGTGATATTAAACCAGGCAACATTCTTCTAGATGACGACATGGTGGCACATGTTACCGACTTTGGTCTAGCAAAGATAATGCATTCTGAACCACGCATACAAAGCAGCTCATTAGTAATTAAAGGAACAATTGGATATGTCCCACCAGGTAAATGATTATTATTTAACTAAACTATGGCCACAGTGAAAATTCTTTCCACTCTAAATTGTACTAGTTTCATAAAAATGATAGTATGGTATTTTAATGTGACCTAAAGATGCTAAAAGAATTAAAATGTGATACTGATCTTCTATTTGACTGAAAAATTGTAGTGTGAAATCCACCTTTTATCCCTACTTATTAGTAGCAACTAAAACATTCATTTATATACACAGAATATGGAGCGGGATCTCAAGTATCCATGGATGGTGACATATATAGCTACGGGGTGTTGTTACTGGAAATATTTACTGGAAGAAGACCAACTGACAATTTTATCAATGGTATAACAAGTCTTGTTGACTATGTTAAGATGGCCTATCCTAACAATCTACTGGAAATATTGGATGCTAGCGCAACCTACAATGGAAACACTCAAGAATTGGTAGAACTAGTTATTTATCCTATATTTCGACTTGGTCTAGGATGCTGCAAGGAATCACCAAGGGAAAGAATGAAGATGGATGATGTAGTCAAAGAATTGATTGCTATAAAGAAGGCATGCACAGCTATGCCTAAATGAAATTCGAGCAACCAAGTAATCTGGGTAAGCAATTATATGTAACTAAATTTGGTTATGTCTGCTCAAAAAGTTGTCACAGAAGTATGCTTTTGGTGTATCTGAAGTCCATTATATTGTTGTCACTACTGTTTATTTCATTTTCATCTTGTATTTCTTTGTATCCCTTTTGTTTCTGTATTTTGGGGGTGCTATCTATATATGGTTTTAAAGAGT
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| CDS seq | ATGGCAATCAAGAGGACATGGCAACTTTGGTTGCTCTCTCTTCTCACACATGCCATCCTATTGTTCACAGCCAGCTCTCAGTCCATCAATGGAGATGACCTCTCAGCACTCCTGTCATTCAAATCCCTCATAAGGAACGACCCAAGAGAGGTGCTGTCCTCGTGGGACACCAGCAGCAACACTACCAACATGACAGCACCTGTCTTCTGCCGATGGACCGGCATTTCCTGCAACGATCGCCGGCATCCAGGTCGTGTTACCACCCTCAATCTGAGCGATGCCGGCCTAGTCGGCACCATATCCCAGCAGCTTGGAAACCTGACCCACCTCCGTGTCCTTGATCTGTCAACCAACAGTCTTGATGGAGATATCCCAATCAGCCTTGGCGGTTGCCCAAAGCTTCATGCCATGAACTTGAGCATGAACCATCTGTCAGGTAACATCCCTGCTGATCTTGGACAGTTATCAAAGCTTGTGGTTTTCAGTGTCGGCCACAACAATCTTACCGGTGATATTCCCCAAGTCACTCTCCAACGTCAAGAGGAACTTCATCCATGGCCAAGATTTGAGTTGGATGGGCAACCTCACATCATTGAGAGACTTTATTCTTGA
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| Protein seq | MAIKRTWQLWLLSLLTHAILLFTASSQSINGDDLSALLSFKSLIRNDPREVLSSWDTSSNTTNMTAPVFCRWTGISCNDRRHPGRVTTLNLSDAGLVGTISQQLGNLTHLRVLDLSTNSLDGDIPISLGGCPKLHAMNLSMNHLSGNIPADLGQLSKLVVFSVGHNNLTGDIPQVTLQRQEELHPWPRFELDGQPHIIERLYS |
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| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0247600 | OsNip_08t0247600-01 | Chr08 | 9001801 | 9005304 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAATCAAGAGGACATGGCAACTTTGGTTGCTCTCTCTTCTCACACATGCCATCCTATTGTTCACAGCCAGCTCTCAGTCCATCAATGGAGATGACCTCTCAGCACTCCTGTCATTCAAATCCCTCATAAGGAACGACCCAAGAGAGGTGCTGTCCTCGTGGGACACCAGCAGCAACACTACCAACATGACAGCACCTGTCTTCTGCCGATGGACCGGCATTTCCTGCAACGATCGCCGGCATCCAGGTCGTGTTACCACCCTCAATCTGAGCGATGCCGGCCTAGTCGGCACCATATCCCAGCAGCTTGGAAACCTGACCCACCTCCGTGTCCTTGATCTGTCAACCAACAGTCTTGATGGAGATATCCCAATCAGCCTTGGCGGTTGCCCAAAGCTTCATGCCATGAACTTGAGCATGAACCATCTGTCAGGTAACATCCCTGCTGATCTTGGACAGTTATCAAAGCTTGTGGTTTTCAGTGTCGGCCACAACAATCTTACCGGTGATATTCCCCAAGTCACTCTCCAACGTCAAGAGGAACTTCATCCATGGCCAAGATTTGAGTTGGATGGGCAACCTCACATCATTGAGAGACTTTATTCTTGA
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| Protein seq | MAIKRTWQLWLLSLLTHAILLFTASSQSINGDDLSALLSFKSLIRNDPREVLSSWDTSSNTTNMTAPVFCRWTGISCNDRRHPGRVTTLNLSDAGLVGTISQQLGNLTHLRVLDLSTNSLDGDIPISLGGCPKLHAMNLSMNHLSGNIPADLGQLSKLVVFSVGHNNLTGDIPQVTLQRQEELHPWPRFELDGQPHIIERLYS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.164441 | 5.929903 | 0.637323 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0170300 | SBH | 0.074437 | 0.074055 | 1.276557 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g14950 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0247600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008530 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0008570 | SBH | 0.616447 | 0.0 | 0.077008 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008670 | SBH | 0.137900 | 0.0 | 0.664060 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0008540 | RBH | 1.243902 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008470 | RBH | 33.848236 | 0.0 | 2.667310 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0142500 | RBH | 4.240705 | 0.008641 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0008480 | RBH | 0.545056 | 0.0 | 0.386033 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0136300 | SBH | 0.895194 | 0.1415615 | 0.4255935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0008040 | SBH | 0.486234 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008240 | RBH | 0.0 | 0.952107 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0008080 | SBH | 2.314076 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008770 | RBH | 0.072970 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008230 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008490 | SBH | 0.100248 | 0.0 | 1.117267 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008290 | RBH | 0.0 | 5.549429 | 0.836763 |
