Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0203100 | OGI:08015860 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:5982519-5985990 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATGCAGTGGCGGCGCTGAACGCGATCCTGGGGAGATGGGGAACGAATCCGCCCAAGACTTGGAACATCACCGGCGGCGACCCCTGCACCGGCACCGCCGTCGACGACACCAACATCGACGACAGCCCCGTCGTCAACCCCGGCATCAAGTGCGACTGCTCCTTCAACAACCGCACCGTCTGCCACATCACCAAGCTGTACGTGCACGCCTTTGACTGAACCTCTTGCTTCGACCGCAGGCCAGGTGTTCGACGGAATGCCTCAGAGGACAGAGGAAATTCTAGAGAGAGGCCATGGGGTCCTCCGATTTTTATTTTTATTTTTGGTCTGGTAGTTGCAAGAAGCATATAATTGCTCTTGGGATCAATTCACAAATCACGATGAATAGGATTTGGATACTTGCGAACACACAATCTTTTTAGTGCATTGTGTTTTTAGTTACTGTCGTCATGCAAGGGAGTTTTCTGACGTGATGTTTATGCAGGAGGGTGTACGCGTTGAATGTTGTCGGTACGATACCTGCGGAGCTGGAGAGTCTCAGATATCTGGCTAACTTGTATGGTTTCAAATTCTTATGCCTTAGAATTTTTTTTTATGATGATTGATGGAGCACTTTCTGTTGCACTGTCAAATAGTTGAACAGTATTTTTGCAGTAAATATTGATCCAATCCCATGTTTTGACTAATCAATTTTCAGTTAGCAGGAAAAAACTGGATTAATAGTAATCATACCTCGTGTGTTTGGCTAATTTGTTTGATGATTCTTGTGTTGTTTCAGGAACCTGCAGCAAAATTACTTGACTGGCCCTGTGCCATCATTCATTGGGAAGCTTACTTTCATGCAATACCTGTAAGAGTTTGATTTCAAGTTATATATTCTTCTACATCAGTCTGTTGGAGCTTTCTCTTAGACATCTTCTCTCCTTGTTATTTTTTCGTTTATGAAAAAAGGACCTTATCAATCAATTCGCTATCTGGGCCCCTTCCAAAGGAAATTGGGAATCTCACGGATCTTCGATCATTGTAAGAGATCTTCTTGCATGTCTTCTCATTCTCAACAATTGATTAGTGTCTGAAGTAAATTAATTGCATATATTCTCAAGGAGAAGTTCTAAAAAAACATTACTCATATGCAAGTCTTGTCGGTGCAATTTACCTTTTCCAAATGGTGTTCATAACCTTAATCCAAATGAAATCCTAAAAAGGTGAATATTATGGATCATCAGGAAAAGTTAATCCACTTTTCTGCTATTTTTAGTGCAGATAAACAAGTTATATCAATTCTAAACTATTTCCTTTTGTTTCAGAGGCATTGGCTCAAACAATTTTACTGGTGAACTTCCTGAAGAACTGGGCAACTTGACCAAACTCGAACAATTGTAAGATCCCCCGCCCACCCTCCCCCCCCCTCCCCCCCCCCTTAACCGCCAAATGCTACTCTAAATAACTAAAATTGTGACCAGTAATATCTGTATTGTTAAACATGATAATTACTATAATGTTTTGATAACAGGTACATTGATAGTTCTGGCTTCAGTGGTCCATTCCCTTCAACATTATCAAAACTTAAGAATCTGGAGAAGCTGTATGGTCAACAACAGAGCCATAGTAGTTATATTTGTTGTGCTTCATATGCTCAAATTGTATTTATGTTGTTGTTCTTGCAGGTGGGCATCAGATAATGATTTCACAGGGAAAATACCTGATTATTTAGGGACCTTGACAAAGTTGGTGGAACTGTAAGATTTATTGTTAACTTATCAGTTTAATTTATGTTATTTATCCTATACAGGATACAAATAGATCGATTGTGCAACATATCTGCTCTGCATATATTATTTTCATTTGAATTAGGAGAAATATTCATCAACACAGGCATCTGCATGGGCAATATGTTTTATTTTTGGTGGATCAGATATTTATTTATTTTTCTGTAGACTCTTTGTGTTTTTTGCATATTTGATCAGTATCTAACAAAAAATAGATTCTAACCATCCATGCCAAGCAGTTCATACATGTAGGCTTTCTTCAAATAGCTTTTGTGACTAACTCAAACTCCATCTCAATGTATGTGTGCATGGTGTTTTGAATATTTTCTTAGTTACTTATATTGGGGACTCAAGACACTTGTATAAATTTTAATAGAACTCAAACATATTTGTTAGGGTATCTGTGCAATACACCAATTAAGATATTGATCCTCTTCCTATCTAAAGGATATGCTGGTTAAATAGATTGGATTGTTAGGGTTTTTCTCCTTTTCTTGATTATTTTGCGAAATTTTGATTAATATAGGAATTTCTGCCCTTTTAGCTATCTACGAGTAACGTGGGGGTTTCTAAAAAAGGGTCCTGGAGTATAGTGTAAAGAAAGCCAAAGTTTCACTTTCCAGTTCTTGCTATCTTTTGCTTGAACTCTGAAATTTGTCATTCCAAGCTCTTTGAAATGCAGAGCATACTTCTTATGTTAATTTATTTAGCATATTCCTACCTTTTCTTAAAGTGTAAACTTGTAGGAGGTTCCAAGGAAATTCTTTTCAAGGCCCGATTCCAGCAAGTTTGTCTAATTTGTCCAACTTGACAAGCTTGTAAGTACTTCTTTCTTAGGTGACATTTTCCCCCTGATGGTTGGCAAGGCCAAGCTTGTCATGATAATTTGTGTTCTAAATACACATATGCAGACGAATTGGTGATATTGTAAACGGGAGCTCTTCGCTGGCCTTTATCAGTAACCTGACGTCTTTGAATATCCTGTATGTGACATGTTTTAAAGTTTTATTAAACATCTTACAGTTTTATACATTGAAAACTTGTTTCTAAGTTTGGATCTTTTGTTCTTTCAGAATATTGAGGAACTGCAAGATATCCGATAATCTCAGAACAGTAAATTTCTCTAAGCTTGGAAGATTAACCTTGTTGTAAGTTTTTCTTGACATAGTACCACGTTCTATTGCTATTGGTTATTATTTCTCGTAGTTTTATGTGTGTTTACTTAAGTAATATTGCTAAACGTATGCCATAGGGACTTGAGCTTTAATAATATCACAGGCGAAGTTCCTCAGTCCATCCTTAATCTGAACAACCTTGGATACTTGTAAGGAATTCTTTCTGAAGATTATTGCTGTTATAGAAACGCCTGTTAAGCTGACATCCATGTTTTGTCGTCTTGAATGGTGACTCAATTCAGGTTTCTCGGGAACAATAGCCTTACAGGAAGCCTGCCAGATGCGAAGAGCTCCTCCCTAACCAATTTGTATGGCTGCCAATTCAACATATATAGTATTATAGCCAAAATAGATTTCAGCATTGCAATGATATATTCATTTCATATGTTAGTAATCTTGGATTTTTGCAGAGATTTTTCATACAATCAACTCACGGGAAGCTTTCCTTCATGGGTTACCAATAACAATTTGCAATTGTAAGTTAAAATTTCTGATGAAAAATGGAAATAAAGACAGACTATGTTGTAT
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| CDS seq | AATGCAGTGGCGGCGCTGAACGCGATCCTGGGGAGATGGGGAACGAATCCGCCCAAGACTTGGAACATCACCGGCGGCGACCCCTGCACCGGCACCGCCGTCGACGACACCAACATCGACGACAGCCCCGTCGTCAACCCCGGCATCAAGTGCGACTGCTCCTTCAACAACCGCACCGTCTGCCACATCACCAAGCTGAGGGTGTACGCGTTGAATGTTGTCGGTACGATACCTGCGGAGCTGGAGAGTCTCAGATATCTGGCTAACTTGAACCTGCAGCAAAATTACTTGACTGGCCCTGTGCCATCATTCATTGGGAAGCTTACTTTCATGCAATACCTGACCTTATCAATCAATTCGCTATCTGGGCCCCTTCCAAAGGAAATTGGGAATCTCACGGATCTTCGATCATTAGGCATTGGCTCAAACAATTTTACTGGTGAACTTCCTGAAGAACTGGGCAACTTGACCAAACTCGAACAATTGTACATTGATAGTTCTGGCTTCAGTGGTCCATTCCCTTCAACATTATCAAAACTTAAGAATCTGGAGAAGCTGTATGGTCAACAACAGAGCCATAGTAGTTATATTTGTTGTGCTTCATATGCTCAAATTGTATTTATGTTGTTGTTCTTGCAGGTGGGCATCAGATAA
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| Protein seq | NAVAALNAILGRWGTNPPKTWNITGGDPCTGTAVDDTNIDDSPVVNPGIKCDCSFNNRTVCHITKLRVYALNVVGTIPAELESLRYLANLNLQQNYLTGPVPSFIGKLTFMQYLTLSINSLSGPLPKEIGNLTDLRSLGIGSNNFTGELPEELGNLTKLEQLYIDSSGFSGPFPSTLSKLKNLEKLYGQQQSHSSYICCASYAQIVFMLLFLQVGIR |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56130 [UniProtKB/Swiss-Prot:C0LGH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0203100 | OsNip_08t0203100-01 | Chr08 | 5982519 | 5985990 | + | RAP2018-11-26 | ||
| CDS seq | AATGCAGTGGCGGCGCTGAACGCGATCCTGGGGAGATGGGGAACGAATCCGCCCAAGACTTGGAACATCACCGGCGGCGACCCCTGCACCGGCACCGCCGTCGACGACACCAACATCGACGACAGCCCCGTCGTCAACCCCGGCATCAAGTGCGACTGCTCCTTCAACAACCGCACCGTCTGCCACATCACCAAGCTGAGGGTGTACGCGTTGAATGTTGTCGGTACGATACCTGCGGAGCTGGAGAGTCTCAGATATCTGGCTAACTTGAACCTGCAGCAAAATTACTTGACTGGCCCTGTGCCATCATTCATTGGGAAGCTTACTTTCATGCAATACCTGACCTTATCAATCAATTCGCTATCTGGGCCCCTTCCAAAGGAAATTGGGAATCTCACGGATCTTCGATCATTAGGCATTGGCTCAAACAATTTTACTGGTGAACTTCCTGAAGAACTGGGCAACTTGACCAAACTCGAACAATTGTACATTGATAGTTCTGGCTTCAGTGGTCCATTCCCTTCAACATTATCAAAACTTAAGAATCTGGAGAAGCTGTATGGTCAACAACAGAGCCATAGTAGTTATATTTGTTGTGCTTCATATGCTCAAATTGTATTTATGTTGTTGTTCTTGCAGGTGGGCATCAGATAA
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| Protein seq | NAVAALNAILGRWGTNPPKTWNITGGDPCTGTAVDDTNIDDSPVVNPGIKCDCSFNNRTVCHITKLRVYALNVVGTIPAELESLRYLANLNLQQNYLTGPVPSFIGKLTFMQYLTLSINSLSGPLPKEIGNLTDLRSLGIGSNNFTGELPEELGNLTKLEQLYIDSSGFSGPFPSTLSKLKNLEKLYGQQQSHSSYICCASYAQIVFMLLFLQVGIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.118287 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0170300 | SBH | 0.074437 | 0.074055 | 1.276557 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10290 | SBH | 0.129179 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0203100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006650 | SBH | 2.053545 | 3.530581 | 8.296441 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006600 | SBH | 0.140585 | 1.337147 | 4.148973 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006720 | SBH | 1.894804 | 2.803652 | 8.249969 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006580 | SBH | 0.539574 | 0.064760 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006610 | SBH | 4.170760 | 1.612104 | 56.630119 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0091400 | SBH | 10.8169235 | 14.028789 | 0.731616 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006300 | SBH | 0.0 | 0.239443 | 0.078989 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0094100 | SBH | 7.2143315 | 14.259834 | 5.57544 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006250 | SBH | 0.020270 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006320 | SBH | 0.207751 | 5.179120 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006360 | SBH | 2.114534 | 3.288301 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006590 | SBH | 0.016456 | 0.100886 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006380 | SBH | 1.396480 | 1.157436 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006420 | SBH | 0.051513 | 0.727958 | 0.293259 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0006270 | SBH | 0.924928 | 16.056192 | 0.683328 |
