Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0107800 | OGI:08001040 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:381307-383986 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAAATCCAGATGAATATAGGATAGTGATAAATGTTTTTGTTTGGATCATAGTATAAGGATAAGAGAGCAGTACTAACATTTCATAGAAAGCTAACAAAGGAAACAAAATTAGAGAACTATAATAGGAATTGGGTTATTTTTACTTCTCCGGAGTTCATATACAGTGTAACAAGAGTGCTCTTCATACCTACAATCCCCACATAAGAAACAAAAAACGATCCCCACAGCAGGCAGCCAGGCAGTATCATCAAAGAGCCTGGGATTTCACACAGGACGATATTTTTCAGGATAAACTTTATATGTTGAACGTGTCTCCCACATGAAACCAGCACAATCAGCAGCTCAGCCTACGACTCTTCAGGGGGAAGTTCTCTTGATTAATTTTAGAGAATGGAGAGGTAATCCCCAGCCTTGCATACCTGCTCTTTGTGAAGTAACTTAGTACAGCCACTCTTCTCCATATGAAGAAATAAATCATCCAATTCTTCTAGCAACCCTTGTTTTACAACATTTTCTATCATTAACCAGTAGGTCACAACATTTGTCACTAAACCATTGGTCGAGAGAGCAGCAAACAAATCCTCAGCGTCATCATTTCTATTCTCAATCTGTAAATCCATCAAACACGGTTCTGAACCATTGGAGGGAATCTGAGGTGCAACTATTTTGGCAAAGTACCAGACTGATTATGTTGCAAGTGCTAAATTCAAACCGTATCCCACTTAATCATCCTGAGATAGAGTTCTTTTGCAGCTACAGTTCTTCCAGCCTGGAATAACCCTTGCAGCAGCATCTCATATGTAACAATGCCAGGATTCACACCCTTGCCATCCATCTCTCTCAAAAGAGTAAGTCCATCCTCTATCCTACCATTTTGAGAGTAACCATTAATAATGGTATTATAGGTAACGTCACTAGGTTTTACCCCATTGAACACCATAACTCCAAGTAGTTTCATTGCTTCATCCATCTTACCATCTAAGCAATATCCATCAATGAGTGTATTGTATGTATTAGTATTAGGTTCAATACCTATGCGCACCATCAAGTCAAACAAGTTTTTGGCTTCTATAACCCTTCCTTTTTTGCATAGGTTGCCCATTATTGCATTGAAGAAAATTGTGTCAAGACAGATGCCGCGATCGATCATTTCGAAAGCTAGCTCCTCAACCTTGTCCCATTTGTCACAGGTACACAGGCCATGAATTAGGGTGGTAAAAACAACAATGTTAGGAGCAAGTCCTTCAGATTTGAGGCTGTTGAATTGAGACAAAGCATCATCCACTCTGCCTGCTGTACAAAGTATGTCTAATACTGTTCCATAGTTGACTATATCAGGGTTCAATCCTTGCTGCCTCATATTGCTAAATACAAGCAAGGCCTCATCTACCTTGTTATGTTTAGCATATGCGCCCATTATCATGTTAAAGATATGATGACCAAGTTGCATACCTTTCTTCATCATCAAATCCAAAAGATCATGCATCTCAACAAGAGCTCCTTCAGTAGCATAGCCATGAAGCAGAGTACCATAGGTAGTGCTATCAGGCTTGTGTCCCCTCTTGACCAAAGAATCAAAAATCTTTCTAGCTTCTGTGCTTTTCCCATTCTTGCATAGATAGTCCATCAGCGCAGTATAAGTAACGACATCGGGTTCAACACCATGTCTGCACATCTTTTTGAAAATCCCAATGGCCTCTTTGGGCTTTCCTGAAGAGCAATATCCATGCACAAGACTAGTATACATGATGCAATCAGGCATAACACCGTTCTTAACCATCCTAGTAAAGACTTGTGTGGCCTTGTCCATTGCTTGAGTCTTGGATAGGGCACTGATAATCGAGCTGTAAGTCACAACATCTGGTGATGGCCCTCGATCCAGCATTGCATCAAACAGGGAATAAGCTTTGTCCAGCTGACCCTCCCTAAGCAAGCCATTGATGACAGTGGTATACGCCACCACATCGAGTGGGCAGCGCCCTTTATGATCAGCCATGATATGGAGCAAGTCGAGAGCTTGTTGACTTGTCTTGTCATCACAGAGACCCTTGAGAAGAATGGTGTAGGAGAAGAGATCTGGCTTGCAACCTAGCTCGGGCATTCGTCGCAGCACAATGTCCATCGCATCGCTCGTCCTCCTGCGGTCACAGAGGCCCTTGAGAAGAGGACTGAAGAGGATTGGGCTCATCCTCAACCCCGTCGTGATGACACGGCCGACGGTGGCGAAAGCGAGGTCCAAGCGGCCGAGGCGGCGGCAGCAGCCAATGACGATGCCGTAGGTGGCGATATTGGGAGCCGCACTGGTGGCGCCGGCTCTGGGCATGCGGTTGAAGAGGGAGATGGCGACGGCGGGGCTGGCACGCGCGACGTCGGAGAGGGCGCGGTTGAGGTCGAAGATGGAGGCACGGTCGCCTCGCTTGAGCAATCTGTCGAACACCTGGTGTGCGTCCCCGGGCTCGGTCGCTCTCTGCCTCCCTCCTTGCTTCGTGCGCTTGGCCCCACCCCGTCCTCCTTGCTTCGTGCGCTTGGAGCTGGAGGCCCCAGCCCGTCCCAGCGCGCTTCCACCGCCGCGGACTCCCATGGCCAGCCTCTCCAACTCCGGCGACGCCGCTCGGCCGCCGCCGCCGCGTCGTCCAGAGAGAGAGGAGAGTTCTGAGCTGGTGGGCTGAGAAACTGGAAT
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| CDS seq | ATGGGAGTCCGCGGCGGTGGAAGCGCGCTGGGACGGGCTGGGGCCTCCAGCTCCAAGCGCACGAAGCAAGGAGGACGGGGTGGGGCCAAGCGCACGAAGCAAGGAGGGAGGCAGAGAGCGACCGAGCCCGGGGACGCACACCAGGTGTTCGACAGATTGCTCAAGCGAGGCGACCGTGCCTCCATCTTCGACCTCAACCGCGCCCTCTCCGACGTCGCGCGTGCCAGCCCCGCCGTCGCCATCTCCCTCTTCAACCGCATGCCCAGAGCCGGCGCCACCAGTGCGGCTCCCAATATCGCCACCTACGGCATCGTCATTGGCTGCTGCCGCCGCCTCGGCCGCTTGGACCTCGCTTTCGCCACCGTCGGCCGTGTCATCACGACGGGGTTGAGGATGAGCCCAATCCTCTTCAGTCCTCTTCTCAAGGGCCTCTGTGACCGCAGGAGGACGAGCGATGCGATGGACATTGTGCTGCGACGAATGCCCGAGCTAGGTTGCAAGCCAGATCTCTTCTCCTACACCATTCTTCTCAAGGGTCTCTGTGATGACAAGACAAGTCAACAAGCTCTCGACTTGCTCCATATCATGGCTGATCATAAAGGGCGCTGCCCACTCGATGTGGTGGCGTATACCACTGTCATCAATGGCTTGCTTAGGGAGGGTCAGCTGGACAAAGCTTATTCCCTGTTTGATGCAATGCTGGATCGAGGGCCATCACCAGATGTTGTGACTTACAGCTCGATTATCAGTGCCCTATCCAAGACTCAAGCAATGGACAAGGCCACACAAGTCTTTACTAGGATGGTTAAGAACGGTGTTATGCCTGATTGCATCATGTATACTAGTCTTGTGCATGGATATTGCTCTTCAGGAAAGCCCAAAGAGGCCATTGGGATTTTCAAAAAGATGTGCAGACATGGTGTTGAACCCGATGTCGTTACTTATACTGCGCTGATGGACTATCTATGCAAGAATGGGAAAAGCACAGAAGCTAGAAAGATTTTTGATTCTTTGGTCAAGAGGGGACACAAGCCTGATAGCACTACCTATGGTACTCTGCTTCATGGCTATGCTACTGAAGGAGCTCTTGTTGAGATGCATGATCTTTTGGATTTGATGATGAAGAAAGGTATGCAACTTGGTCATCATATCTTTAACATGATAATGGGCGCATATGCTAAACATAACAAGGTAGATGAGGCCTTGCTTGTATTTAGCAATATGAGGCAGCAAGGATTGAACCCTGATATAGTCAACTATGGAACAGTATTAGACATACTTTGTACAGCAGGCAGAGTGGATGATGCTTTGTCTCAATTCAACAGCCTCAAATCTGAAGGACTTGCTCCTAACATTGTTGTTTTTACCACCCTAATTCATGGCCTGTGTACCTGTGACAAATGGGACAAGGTTGAGGAGCTAGCTTTCGAAATGATCGATCGCGGCATCTGTCTTGACACAATTTTCTTCAATGCAATAATGGGCAACCTATGCAAAAAAGGAAGGGTTATAGAAGCCAAAAACTTGTTTGACTTGATGGTGCGCATAGGTATTGAACCTAATACTAATACATACAATACACTCATTGATGGATATTGCTTAGATGGTAAGATGGATGAAGCAATGAAACTACTTGGAGTTATGGTGTTCAATGGGGTAAAACCTAGTGACGTTACCTATAATACCATTATTAATGGTTACTCTCAAAATGGTAGGATAGAGGATGGACTTACTCTTTTGAGAGAGATGGATGGCAAGGGTGTGAATCCTGGCATTGTTACATATGAGATGCTGCTGCAAGGGTTATTCCAGGCTGGAAGAACTGTAGCTGCAAAAGAACTCTATCTCAGGATGATTAAGTGGGATACGGTTTGA
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| Protein seq | MGVRGGGSALGRAGASSSKRTKQGGRGGAKRTKQGGRQRATEPGDAHQVFDRLLKRGDRASIFDLNRALSDVARASPAVAISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMIKWDTV |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0107800 | OsNip_08t0107800-01 | Chr08 | 381307 | 383986 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGAGTCCGCGGCGGTGGAAGCGCGCTGGGACGGGCTGGGGCCTCCAGCTCCAAGCGCACGAAGCAAGGAGGACGGGGTGGGGCCAAGCGCACGAAGCAAGGAGGGAGGCAGAGAGCGACCGAGCCCGGGGACGCACACCAGGTGTTCGACAGATTGCTCAAGCGAGGCGACCGTGCCTCCATCTTCGACCTCAACCGCGCCCTCTCCGACGTCGCGCGTGCCAGCCCCGCCGTCGCCATCTCCCTCTTCAACCGCATGCCCAGAGCCGGCGCCACCAGTGCGGCTCCCAATATCGCCACCTACGGCATCGTCATTGGCTGCTGCCGCCGCCTCGGCCGCTTGGACCTCGCTTTCGCCACCGTCGGCCGTGTCATCACGACGGGGTTGAGGATGAGCCCAATCCTCTTCAGTCCTCTTCTCAAGGGCCTCTGTGACCGCAGGAGGACGAGCGATGCGATGGACATTGTGCTGCGACGAATGCCCGAGCTAGGTTGCAAGCCAGATCTCTTCTCCTACACCATTCTTCTCAAGGGTCTCTGTGATGACAAGACAAGTCAACAAGCTCTCGACTTGCTCCATATCATGGCTGATCATAAAGGGCGCTGCCCACTCGATGTGGTGGCGTATACCACTGTCATCAATGGCTTGCTTAGGGAGGGTCAGCTGGACAAAGCTTATTCCCTGTTTGATGCAATGCTGGATCGAGGGCCATCACCAGATGTTGTGACTTACAGCTCGATTATCAGTGCCCTATCCAAGACTCAAGCAATGGACAAGGCCACACAAGTCTTTACTAGGATGGTTAAGAACGGTGTTATGCCTGATTGCATCATGTATACTAGTCTTGTGCATGGATATTGCTCTTCAGGAAAGCCCAAAGAGGCCATTGGGATTTTCAAAAAGATGTGCAGACATGGTGTTGAACCCGATGTCGTTACTTATACTGCGCTGATGGACTATCTATGCAAGAATGGGAAAAGCACAGAAGCTAGAAAGATTTTTGATTCTTTGGTCAAGAGGGGACACAAGCCTGATAGCACTACCTATGGTACTCTGCTTCATGGCTATGCTACTGAAGGAGCTCTTGTTGAGATGCATGATCTTTTGGATTTGATGATGAAGAAAGGTATGCAACTTGGTCATCATATCTTTAACATGATAATGGGCGCATATGCTAAACATAACAAGGTAGATGAGGCCTTGCTTGTATTTAGCAATATGAGGCAGCAAGGATTGAACCCTGATATAGTCAACTATGGAACAGTATTAGACATACTTTGTACAGCAGGCAGAGTGGATGATGCTTTGTCTCAATTCAACAGCCTCAAATCTGAAGGACTTGCTCCTAACATTGTTGTTTTTACCACCCTAATTCATGGCCTGTGTACCTGTGACAAATGGGACAAGGTTGAGGAGCTAGCTTTCGAAATGATCGATCGCGGCATCTGTCTTGACACAATTTTCTTCAATGCAATAATGGGCAACCTATGCAAAAAAGGAAGGGTTATAGAAGCCAAAAACTTGTTTGACTTGATGGTGCGCATAGGTATTGAACCTAATACTAATACATACAATACACTCATTGATGGATATTGCTTAGATGGTAAGATGGATGAAGCAATGAAACTACTTGGAGTTATGGTGTTCAATGGGGTAAAACCTAGTGACGTTACCTATAATACCATTATTAATGGTTACTCTCAAAATGGTAGGATAGAGGATGGACTTACTCTTTTGAGAGAGATGGATGGCAAGGGTGTGAATCCTGGCATTGTTACATATGAGATGCTGCTGCAAGGGTTATTCCAGGCTGGAAGAACTGTAGCTGCAAAAGAACTCTATCTCAGGATGATTAAGTGGGATACGGTTTGA
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| Protein seq | MGVRGGGSALGRAGASSSKRTKQGGRGGAKRTKQGGRQRATEPGDAHQVFDRLLKRGDRASIFDLNRALSDVARASPAVAISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMIKWDTV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.091099 | 0.186538 | 0.222656 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495400 | SBH | 0.828533 | 0.622825 | 0.833279 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01650 | RBH | 0.061606 | 0.125462 | 0.057316 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0107800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000540 | RBH | 0.144536 | 1.140030 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000550 | SBH | 0.0 | 0.157942 | 0.422831 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000560 | SBH | 0.274900 | 0.485085 | 0.778541 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0000540 | RBH | 0.053418 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0000520 | RBH | 1.176220 | 2.586586 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0006500 | RBH | 1.222288 | 2.276152 | 0.955963 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0000490 | RBH | 0.121913 | 0.240296 | 0.046159 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0006900 | RBH | 1.073596 | 1.524857 | 6.533917 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000610 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0000530 | RBH | 0.0 | 1.131479 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0000540 | RBH | 1.764591 | 4.627967 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0000540 | RBH | 0.0 | 0.089411 | 0.086221 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0000540 | RBH | 0.0 | 2.075686 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000540 | SBH | 0.034128 | 0.191041 | 0.115861 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000540 | SBH | 0.000000 | 1.718111 | 0.170857 |
