Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0676900 | OGI:07078280 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:28660188-28661792 | ||||||||
| Gene Symbol | prx109, POX-2 | ||||||||||
| DNA seq | AGGCCATTGCATACACACACAGAGTTGTTTGCATTGTAGATTGACAATGGCCTCTTGTCTGTCAGTCCTGTTGCTCTTGTGTCTAGCACTTGCAGGTTCAGTCTCCGGGCAACAACTGTCGGCTACATTCTATTCGAGGTCGTGCCCGAGAGCTCTGGCCATCATCAGGGCCGGCGTGAGAGCTGCGGTGGCGCAGGAGCCTCGCATGGGGGCGTCACTGCTCAGGCTTCACTTCCATGACTGCTTTGTCCAAGCAAGTCGTGCATTTCCACACTACTTGACTTACATTTTTATATCCATCAGTCAATTACATTGTGGTCGCAGCCTTTGCAGTTTCAGTTCTTTACACTCTTTCAGTCTCTCTTCCAGTTTAATGTGCTGCGTCAGAACAGAATGGACTCGTAGCACTGTGTTGACGTTGGATTAGAGAGACTATGGCCACCGAATTTGCTCTCAAGTCATACTAGTTCCTACTACTACTCTGAATTAACCTGAAAAAATTAACTCAACGTGCTAATTGTGTGTTGTGCATCGTGGGTGACATGGATCAGGGGTGCGACGCGTCCGTACTGCTGAACGACACGGCCAACTTCACCGGCGAGCAGGGGGCGAACCCCAACGTCGGATCCATCAGAGGATTCAACGTCGTCGACAACATCAAGGCGCAGGTCGAGGCCGCGTGCAAGCAGACCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCCGTCGTCGCCGTAAGATCATGCCCATCCTTGAGCGCGCAGCTATACGTACTATACGGCGAGCGGCGAACTGAACTTGTGTGTGTGCAGTTGGGTGGGCCGTCATGGAGGGTTCTTCTCGGGAGGCGTGACTCGACGACGGCGAGCTTGGCGCTGGCGAACAGCGACCTGCCACCTCCGTCCTTCGACGTCGCCAACCTCACCGCCTCGTTCGCCGCCAAGGGGCTGAGCCAAGCCGACATGGTGGCGCTCTCCGGCGCGCACACGGTCGGGCAGGCGCAGTGCCAAAACTTCCGCGACAGGCTCTACAACGAGACCAACATCGACGCCGCCTTCGCGGCGGCGCTCAAGGCCAGCTGCCCGCGGCCGACGGGCAGCGGCGACGGCAACCTGGCGCCGCTGGACACGACGACGCCCACCGCGTTCGACAACGCCTACTACACCAACCTGCTGTCGAACAAGGGGCTCCTGCACTCCGACCAGGTGCTCTTCAACGGCGGCGCCGTCGACGGCCAGGTCCGGTCGTACGCGTCCGGGCCGTCGAGGTTCAGAAGGGACTTCGCGGCGGCCATGGTGAAGATGGGGAACATCGCCCCGTTGACGGGAACGCAGGGACAAATCAGGCTCGTCTGCTCCAAGGTGAATTAATTAGCGGTGATCATCAACGAAAATTCTGAGTGCATGAGGGGACAATAATAAGGCTATATATGCCACTGAAATCGATATTTGTGCTTTGCACTGATCAGTGATCATGTTCACGCTTTCTTGGATCAAATTGTGTCCGAGAAAGTGGCGTGTTTGCAAGAATTTGATCGTGTACACTGAATTCTGAAGAGCCCTCATGCAAATGCCCGCGAGATTAACTCCCTTGCCT
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| CDS seq | ATGGCCTCTTGTCTGTCAGTCCTGTTGCTCTTGTGTCTAGCACTTGCAGGTTCAGTCTCCGGGCAACAACTGTCGGCTACATTCTATTCGAGGTCGTGCCCGAGAGCTCTGGCCATCATCAGGGCCGGCGTGAGAGCTGCGGTGGCGCAGGAGCCTCGCATGGGGGCGTCACTGCTCAGGCTTCACTTCCATGACTGCTTTGTCCAAGGGTGCGACGCGTCCGTACTGCTGAACGACACGGCCAACTTCACCGGCGAGCAGGGGGCGAACCCCAACGTCGGATCCATCAGAGGATTCAACGTCGTCGACAACATCAAGGCGCAGGTCGAGGCCGCGTGCAAGCAGACCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCCGTCGTCGCCTTGGGTGGGCCGTCATGGAGGGTTCTTCTCGGGAGGCGTGACTCGACGACGGCGAGCTTGGCGCTGGCGAACAGCGACCTGCCACCTCCGTCCTTCGACGTCGCCAACCTCACCGCCTCGTTCGCCGCCAAGGGGCTGAGCCAAGCCGACATGGTGGCGCTCTCCGGCGCGCACACGGTCGGGCAGGCGCAGTGCCAAAACTTCCGCGACAGGCTCTACAACGAGACCAACATCGACGCCGCCTTCGCGGCGGCGCTCAAGGCCAGCTGCCCGCGGCCGACGGGCAGCGGCGACGGCAACCTGGCGCCGCTGGACACGACGACGCCCACCGCGTTCGACAACGCCTACTACACCAACCTGCTGTCGAACAAGGGGCTCCTGCACTCCGACCAGGTGCTCTTCAACGGCGGCGCCGTCGACGGCCAGGTCCGGTCGTACGCGTCCGGGCCGTCGAGGTTCAGAAGGGACTTCGCGGCGGCCATGGTGAAGATGGGGAACATCGCCCCGTTGACGGGAACGCAGGGACAAATCAGGCTCGTCTGCTCCAAGGTGAATTAA
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| Protein seq | MASCLSVLLLLCLALAGSVSGQQLSATFYSRSCPRALAIIRAGVRAAVAQEPRMGASLLRLHFHDCFVQGCDASVLLNDTANFTGEQGANPNVGSIRGFNVVDNIKAQVEAACKQTVSCADILAVAARDSVVALGGPSWRVLLGRRDSTTASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQCQNFRDRLYNETNIDAAFAAALKASCPRPTGSGDGNLAPLDTTTPTAFDNAYYTNLLSNKGLLHSDQVLFNGGAVDGQVRSYASGPSRFRRDFAAAMVKMGNIAPLTGTQGQIRLVCSKVN |
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| Function | Peroxidase 70 [UniProtKB/Swiss-Prot:A5H452] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0676900 | OsNip_07t0676900-01 | Chr07 | 28660188 | 28661792 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCTCTTGTCTGTCAGTCCTGTTGCTCTTGTGTCTAGCACTTGCAGGTTCAGTCTCCGGGCAACAACTGTCGGCTACATTCTATTCGAGGTCGTGCCCGAGAGCTCTGGCCATCATCAGGGCCGGCGTGAGAGCTGCGGTGGCGCAGGAGCCTCGCATGGGGGCGTCACTGCTCAGGCTTCACTTCCATGACTGCTTTGTCCAAGGGTGCGACGCGTCCGTACTGCTGAACGACACGGCCAACTTCACCGGCGAGCAGGGGGCGAACCCCAACGTCGGATCCATCAGAGGATTCAACGTCGTCGACAACATCAAGGCGCAGGTCGAGGCCGCGTGCAAGCAGACCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCCGTCGTCGCCTTGGGTGGGCCGTCATGGAGGGTTCTTCTCGGGAGGCGTGACTCGACGACGGCGAGCTTGGCGCTGGCGAACAGCGACCTGCCACCTCCGTCCTTCGACGTCGCCAACCTCACCGCCTCGTTCGCCGCCAAGGGGCTGAGCCAAGCCGACATGGTGGCGCTCTCCGGCGCGCACACGGTCGGGCAGGCGCAGTGCCAAAACTTCCGCGACAGGCTCTACAACGAGACCAACATCGACGCCGCCTTCGCGGCGGCGCTCAAGGCCAGCTGCCCGCGGCCGACGGGCAGCGGCGACGGCAACCTGGCGCCGCTGGACACGACGACGCCCACCGCGTTCGACAACGCCTACTACACCAACCTGCTGTCGAACAAGGGGCTCCTGCACTCCGACCAGGTGCTCTTCAACGGCGGCGCCGTCGACGGCCAGGTCCGGTCGTACGCGTCCGGGCCGTCGAGGTTCAGAAGGGACTTCGCGGCGGCCATGGTGAAGATGGGGAACATCGCCCCGTTGACGGGAACGCAGGGACAAATCAGGCTCGTCTGCTCCAAGGTGAATTAA
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| Protein seq | MASCLSVLLLLCLALAGSVSGQQLSATFYSRSCPRALAIIRAGVRAAVAQEPRMGASLLRLHFHDCFVQGCDASVLLNDTANFTGEQGANPNVGSIRGFNVVDNIKAQVEAACKQTVSCADILAVAARDSVVALGGPSWRVLLGRRDSTTASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQCQNFRDRLYNETNIDAAFAAALKASCPRPTGSGDGNLAPLDTTTPTAFDNAYYTNLLSNKGLLHSDQVLFNGGAVDGQVRSYASGPSRFRRDFAAAMVKMGNIAPLTGTQGQIRLVCSKVN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0676900 | OsNip_07t0676900-02 | Chr07 | 28660188 | 28661792 | + | IsoSeq | ||
| CDS seq | ATGTTCACGCTTTCTTGGATCAAATTGTGTCCGAGAAAGTGGCGTGTTTGCAAGAATTTGATCGTGTACACTGAA |
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| Protein seq | MFTLSWIKLCPRKWRVCKNLIVYTE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 28660188 | 28660930 | + | OsNip_07t0676900-02 | OsNip_07t0676900-01,OsNip_07t0676900-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.705209 | 0.000000 | 1.845380 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0339300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47990 | RBH | 0.437273 | 0.000000 | 0.435053 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0676900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027640 | RBH | 2.869101 | 405.604462 | 1.475809 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027650 | SBH | 0.000000 | 18.986893 | 0.229096 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027470 | RBH | 1.305326 | 735.757629 | 6.387176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027240 | RBH | 1.349782 | 12.706379 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027540 | RBH | 2.323719 | 225.331573 | 1.255002 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0466900 | RBH | 4.4859615 | 45.2625655 | 0.0957705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028030 | RBH | 0.467455 | 21.708141 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0481000 | SBH | 2.2265265 | 0.7525525 | 0.3815175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027330 | SBH | 0.221365 | 0.326599 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027760 | RBH | 0.637116 | 90.985054 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027480 | RBH | 0.0 | 428.885162 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027810 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027350 | RBH | 0.837192 | 223.136719 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027430 | RBH | 0.902221 | 51.911198 | 1.349761 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027180 | RBH | 0.654701 | 156.280701 | 2.542739 |
