Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0621400 | OGI:07071680 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:25680593-25682333 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTGTTGTCCAAAGCAAATCAACAATACTAAAAATGCAGTCTTACAGAATCAAATATCACTATAGAAATTTCTGTTGTGTAAAACAAATCAACACTAAAAGTGCAACCTTCAAGGATCAAATATCATCCACAAAATATGAAGTTAAACATCACAAATATCCAGGGCATCAAAGTGACAGACTAAAAATTAACGAAGCTAGAAAATATCTTCTATGCAATGATGATTACAGAACAGAGTATTTCAAAGGTCCATTCGTTTCATTGACTCGTCCAAGTTCTGTAAAAAAAAAATATAAATAGTTCAAATGATCAATATTTCTAAGCAAAAAAAAGATACATTTTTTCTAAAATAAAGCATTAATAAAGCTTTCTAAAATATTGAATTATTGGTGATGATAAATTTGTTTTCCATCAAGTGATTATCCAGAATTTGTAGGCCAAATTTTGGAGGTGTTAATTAAATATGATAGTTGATTATCTAGTTTGCCAGAATTTGCATAACTAAGATAGTACATACAGGAAACTGACGTAATTTGCATCAACTTTGCTGATAAACTATCAGATTTAGAAAAAAAAAACAAAAGAACACAAGAAATTTACTAACCATGGAATCATCAATAACCAGATCCTTCATTTGGACATCCATAAGCTTCCACAATCCATTGAATCCTCTAGGCCCAGGTTCTGTACATAAACATGTTAGAGAGATCAAATGGGTACATCAGCTCATCTAGTTCTGTAAGATGAACTAAATGCATATTAACAAATGCAAAGAAACATGCAGAGTAGTCCATCTAGTTCTAGAATAAAGATTCATCAGGTAAAATTTTACTCTACATAATACTGCTACTTAAATTAGATCCTCTCAACCTGAGATTGCTAATTTGCTCATCAAGCAAGCAAACAAAAGAGAGGTACTAAGCAATGACCGTTCAAGTCTCTTCCAGCCACAAGACTTAGTAGATGCAGAAAGTACAGATGGACAAGACTTAGGGTTTATGGAAGGAATCATATACCGGTGCTCACGGGCGAGAGAAACCCAGCTGGACGAAGGTGGCGATGTGGCTGGGTGTCCTCCGGAGCCCTCATCGTTGCTGCCGGTGGAGTGTCCTCCGGAACACCTCGCCGGTCACTGCTCCTCCGGTTGGCCATCAAGCAGATAGCCGCCGCCCACTGGTGCCTCCATCCGCCGCTGCCACAGGTAGAGCACCTCGTCGGTCACTGCTCCGCCGCCTGCAGGTAGAGTGCACACCGACGGTGGAGCACAGTGCCGCGTCGCCTGAAGTCGCCGCCGCTGCCGCGTGCGAGACGAGAGCACACCTAGGGTCAATCCACGTGGACCCTAGGGTTCACTGGGTGTCAGCCCTTTGTTCCCTAAAAATATATGGGCCAACCCAAGAACCTTTTGGTGCCAAATTTTTAGGGTCGGCCAGCGCACCTAATGGGTCGATCTGCCCCCTTTGCAGGCTGAGGTGTAGCATTATATAACACTAACTAAACAGAGACGATTTTGCTATATATTTGTCGACAAATTTTTCCCTAAAAATTTGACAGATGTAATTACAGTACAATCGTAGTGTAATTACACTATAACTTCTATGTAATCACACTGTAACTATAGTGTAACTTGTATGTAACTTTCAAAAATCTCTCCGTAATATGTTATTTCGGTAAAATGGAGGTCGTGGGAACAAATTCTTTCACATATGTGTGTGCTATGATTTGTTTTCTTCCTCACCAAA
More
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| CDS seq | CCGGCGAGGTGTTCCGGAGGACACTCCACCGGCAGCAACGATGAGGGCTCCGGAGGACACCCAGCCACATCGCCACCTTCGTCCAGCTGGGTTTCTCTCGCCCGTGAGCACCGAACCTGGGCCTAG |
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| Protein seq | PARCSGGHSTGSNDEGSGGHPATSPPSSSWVSLAREHRTWA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0621400 | OsNip_07t0621400-01 | Chr07 | 25680593 | 25682333 | - | RAP2018-11-26 | ||
| CDS seq | CCGGCGAGGTGTTCCGGAGGACACTCCACCGGCAGCAACGATGAGGGCTCCGGAGGACACCCAGCCACATCGCCACCTTCGTCCAGCTGGGTTTCTCTCGCCCGTGAGCACCGAACCTGGGCCTAG |
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| Protein seq | PARCSGGHSTGSNDEGSGGHPATSPPSSSWVSLAREHRTWA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.272201 | 0.533457 | 2.292063 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0822100 | RBH | 0.525793 | 0.492459 | 0.214415 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43120 | SBH | 0.0 | 0.000000 | 0.059377 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0621400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016420 | SBH | 0.0 | 0.000000 | 2.651084 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023890 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023750 | SBH | 0.000000 | 3.008880 | 1.659967 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023680 | SBH | 0.000000 | 0.020610 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0588700 | SBH | 1.396643 | 4.886403 | 6.4397155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0434400 | SBH | 0.106769 | 2.8915175 | 0.6327325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023550 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023710 | SBH | 0.511774 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023610 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023810 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G039460 | SBH | 0.447863 | 0.986764 | 0.711282 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023530 | RBH | 0.0 | 0.0 | 0.0 |
