Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0023530 | OGI:07071680 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:25318942-25326185 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatctgtcttggtgcctgagctcgccccgtctctggtggaactggagccggcccgttaggttcatggccgacccaccgtagccgcgggccggatgcactaagcgtctgagccaccgtgtccagtgaatggttgactggctgtgttaatgtgttatgagtgaaccattaaagcaagtagctatacgtcaattcaattatacaagattcaaaaataatatgaacaatcattttatattaaactgatatcatttttgtactatactgattttatataagtcagatatcaagtgaaataaggaaaaaaaaacacatacactagcatgatatctgaacacatactaacatactagaaatttcggttgtgcgaagcaaatcaacagcactacagcaaaacaaataaataatcaaaaactataccagaacacactgtatacccaatgcaaacattccgaaatgacttaatcttttgcattcaaaagtacaaacatcaatcactgggtactggcacccagttcaattaaaactaagtacatgcatgtactcatatcattcacaaaaatcgatttgaacaacccaaatatccggttcattacattgagatcaaacaaaatgcagctttccaagatcaaagtgggcatcatttggcattccctagcttgcactgttcattgaatcacctaggtctagattctgcaggttaacatgatggagagatcgaatgatcatggtataatgacaggaagaaaatatacaataattgttttaaaaaggtaataacctgcaatatctctcagaaaaagaaatggtgcatttatgttttatgggcaacaactgaatcaagacatgagcatatgcagacagacagaggaatcaaggcagtaggtgttctaagcatttgagtatttgacatataaaacatgcttgaaaaacagaagtaatatgcagtcactgtcacgcccggaatttctatccaaaattccaaacgcttacatgtgtgtgaaccctcgtccaggaatcagccgaggcacacaataacaaattgataatagagtacaattattactctaattaataagcgaataaaatgtcattacagaggtagatagtccctctcaatcaataaagatctaagcagcggaaaaataagataaacggcgcagacgactccactccacaggcagcttgaccagggctacacctaatcctccacaccatcagcatcactgtagagatcttcctctgatgaatgattgcaaggtgagtatatgacatactcagcaagccacgcagcaaatatgcaagtgcacaaggataccaaagaatggcataatatagggctcatttgcaaaagcagcctttagcaaacattggagaattataaaacagtagagtaattaatcatcaattttaattaacactgaacagcacacccatgctgcacaggcccaaccatcctgaacaaccatacccggctgcacagatctatctccaaaccaggaatataccattccaaaccaggagctaaacaaatcattacccgttatagcatcttttattatggtgagaagtgtgaaactaatcacgaaagacattgttagacccgcccataaccgcgggcacggctattcgaatagttttactctggccagaggtgtaccactgtacccacaagacacagccccacaacatgtcaccatgcgcctcaataccaccatggtacctcggaaaggagctgtgacagtacccctcgcacaacacaatccaccacagcgcaccgttcctggatcataatcacccccttataaacaaggcatggactccccagcgacccccgtgggcttatctccgccacttctcagtctggtgctccgcaatgaaccatgctatacaaaaggtaaagtcgttgcccacgctgacttgtggttggcacggttaatatttcacaaccgaaactcgtgaaccggtccttaattgtcatgagcacgactctcaaaaccatgtgctcacaacccaccattatcaagttttagttggcaagtaattaattaaccaatcacgattgaccatcgtgaactatcattaagccatgattaagtaataagttatcccaatagtgtgctaatgtttctaagcatggctaagcaatcatatctaatatctagctgaaccaatatataaagcccaactagtcaagttataataacccaaggtatcaaggaataaagtaatcaagaacaaaagggctataacaaacaataggttaattccacccaatgacatttgaaaataaatgcaatagttgaatagaaacaatagctttaaacgggatcaacatgttcaaagggttgtttgggatctgtgtgacttgccttgctggccttggaactcttcaaattcttctcctgcgaaaacgaactctccggaaacgtcggaatctaaacagaaaagagcaaaaacaccaaaacagcacataaacaagcatgaacagtacatgtggatatttttaacatgtagatctcaattttagaaaaatttagagacttgaaccaactaaatccgagctaagatgaattagttatgaatttttaaagattaaatcggattaaatcacttatatggattttaattgaattatgacacaataatgaattatttttgaaaaggaaaaaggaattattgcgtcagcggctagggttcgcggtggaccgggtgcacggcggcggctcacggaaacgaacggccgagatcgattcatcaaaaacgaacggccgagatcgaccggtccacggccggaccaagggagacaacgacgacgatgacgtcaacggtgacgtcaccaccggcggcggctcgggcgtgcatgctcgccggcgtacgacggcgcgacggcacgaacggagggcaccagcacgtagagggcgacgcggcgaactcaccggtgaccaaaacaacggcggaagatcaacggacggcgacggcgtcgaggaagaagcggcggcgaccttcggcttgacgacgacggcggtgttccggcggtcgacagcgacggcggaggggcggacaaggacggcgacgcgacggcgaccacgatggcgacctccccgagcgacggcgacgactggagcgacggcggcgcacggctggagcggcggcgatgacggcggcgcgaggctacacggtgctagggcgctacagtcgacgagagatgaaggcaagggtggcgacgggtggcggcgggcttgggggtccttttataggggttggaaggcggcgacgaaggcccacggcgaccggcgacgagaaggaaagattagggttcggaggagagagatcgatccgaatcgaactcgaatccacggatttccaaacgattttagccgacgattccaaaagagaaaaggtagaggggatcccgaagatcatttcccctctattgatttcaccggaaacggaaaggggcggctggatttggaaggagatgacggcggcgcggcgctagggttcgggcggcggccggccggaggaagacaacggccctgacaggtgggccccacctgtcagcgggcggacgcgcgcgcgcgagcaggcggctcggctgcgggccggattgggccaggagagagagaaggttttgggccgactttcggcccaaagccaaaagaggattttaaaaacctttttcaatttaaattattcatgaaatgcaattctatttattaaaaatacttccttagctcaaataaatcccagaaaaatctaggaattatagagttaagcaaagtatttaatgaaattttatctggccccattttatattggaattgattaattaaaattagatcttctcttctaggctttttaaaataaattctaataattccaattaaacaacaatttatatatttaggatttttagggtgtgacagtcacccaatagtattcacaatcagagattaaggaatacaagaatcatctaacaggtgctacacaaatttgtagattttactaattttcttcatttatctagcagtagtgcagtacagtctatttttaggctattgttttatttcagaaaggagagcattgcaataccagaaatgaggcttattccttttgtacatctagagcttctcatatgttgtaaaagagttgaactagctcagattataaatagtataatacaaattcatgatagattactaaccatcaatatccagatcctttgtttgggcattcacaagcttccaccatcctgtccatccatggaatcctccaggtccaggttctatagataaagatgaatacatgatagagacattgaaacttcatattccaattttacagaaagctagcaagtaggacagcaaacccatataggcattgttcaatactggataaatagaaagagaaaagctggaagagatcttgcaagcaatcaagcaaatactgaataaatagacatttttctctttcagaaaattaaatagacagatgataagaagagcacaagcaatttactaaccacaaaattatcactgtagttgatttcatttactgagctcacatttatgttaggacctagcaatcaaaacataaaaataaattagttttagcaagataaatactagaagtaaatgaacgagggtagtcgtgtataccgacagaagctcgaaaccaatcttggaggcagataagcacctcaactgaatccattgtaaggctacatctgaaatcgctgatcactctagatcttgtgctgaatgcggactcagatgcaactgttgaagcaggccatgctagcacatcctgtgctatgcaagcgagagttggatactttgagcgattggtcttctaccaatttagaatgtcaaatttgtttccaaattcctgaataggattctctttgaggtagatatccaattcagtatcaacttgctcacttaattgtttagagatgtgttgaacccaatcagccataggatcattttcagagatagccatcacatgtttagcttggcgcagtgggttagcattgctatccttgagtttatcagagtactccttaaacaacatgttcattctcttcttaactttgtcaatcctctctttagcattttcaccaaaggcttgcccaagccgaaattccacaaacttgaatttgaatcttgggtcaaaaatgacaggaatgcacagatatttgtaagacttaagccaatacttgtcaaatttgtccttcatctttttaaccatacttgccacttcagtgtcattgttagagcgttccttgtccaagaccaatttgattttccacatctcatggaaataaaggtttgatgttggatataaagatccagacaccaccatagttgcatcataaagcaccttcaaaattccagagactatggttgctctttcccactgatcaggagagggtgcatatttgtaatttttttcttgaacagccaatgaagcataagccctcatgaaagggaaggctgcattgagcattagatatgtggagttccaacgagtacatacatccacagtaggatgcaactcgcatgtgatcccttcttgggcaatgatctcctcaaacttttctttgcgagatggggaactatccatgtacttcacactttcacgaatgttgcaaacaatagaatcaataaccttcaacccatctttggctatgagattgatgacatgtgctacacatcggttgtgaagtagcttccctcctgctggtatagttttcttagctttcaaattgcactttaacaacttagccattgaatcattggctcaagcattatccaaagtaacactgaatatcttgtctgcgatattccaatcttgaatgcagctgagcatagcattgaacatctgcactccagtatgaggtgtctttactccaaagaactttataatcctcttctgtactctccaatctgtgtcaatgaaatgacatgtcacacacatgtatcccattgtttggttcgaagtccacatatctgcagtcaatgagaacctacaatttgcacccttgaacatgtccttcattgctaacttttgctctttaaaagcagcgatgcaatcattccttatagttgttctcgaaataatcttgaagtaggggttaagactagcagcaaaacttctaaatccatcatactccacaaactggaagggcaactcatgtaatacaatcattcgcatgagctcttttctagaaacttcaggatcaaagctccaattctttaaccttacactattaggagacataagtgtagagtcaagattccccacaatcttaagagcactaattcgcttcttgcatcttgtcaaatgcttcctcaatgaacttgttcccgctccacgctttgcacggatctctgtatcacagtgcttacattttcctgcaccaacttcattatcaatgagtatcggcacaaactctttccaagcctcatatctgaatttccttgttaaagcttgtattactggattcacatgctcatctacaggaccaacttgttcagagtcactatcaccatcacccatctcaatatcttcatcactgttagtgccaagtccaaaaaatgcgttgggtgtccgcatttcctcacttgaaacaaagcaacgaacaacacaaatgtatcatttgccatctaaaataattttctatcacataatgtatggaaaggaaattttggtgtaaaaatctgcacaacagcatgttgtcagcagcatgcaaaaatgctacttattcagtgtttcgttcagtatatcctgaatattgagaaaatccaggttatacaaagacaaagtaaaagaccatctattttacacaaggcagtaggaaactttaaattagcagtaactgaaactttctcctgaatggcatgaaagcaaaattaaactttctcctggcatacaaatctgggcctagcaaaatggcatgaaagcctagctataacagttactgaaactttttcctaaatgagacactatatatacaaatcaaaccaaaaccgagcaagacagatgaacaagacagggttcatggaggaaatcatacctgtgctcacgagggagagaaacccagctggacgaaggtggcgatgtggccgggtgtcctccgaaaccctcgccgttgctgccgatggagtgtcctccggagcacctcgccggttggccaccaagtaggtagccgccgcccgccggtgcctccatccgccgccga
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| CDS seq | atggaggcaccggcgggcggcggctacctacttggtggccaaccggcgaggtgctccggaggacactccatcggcagcaacggcgagggtttcggaggacacccggccacatcgccaccttcgtccagctgggtttctctccctcgtgagcacagccagtcaaccattcactggacacggtggctcagacgcttagtgcatccggcccgcggctacggtgggtcggccatgaacctaacgggccggctccagttccaccagagacggggcgagctcaggcaccaagacagatag |
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| Protein seq | MEAPAGGGYLLGGQPARCSGGHSIGSNGEGFGGHPATSPPSSSWVSLPREHSQSTIHWTRWLRRLVHPARGYGGSAMNLTGRLQFHQRRGELRHQDR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0023530 | OsNaBo_07g0023530.01 | Chr07 | 25318942 | 25326185 | - | NAM | ||
| CDS seq | atggaggcaccggcgggcggcggctacctacttggtggccaaccggcgaggtgctccggaggacactccatcggcagcaacggcgagggtttcggaggacacccggccacatcgccaccttcgtccagctgggtttctctccctcgtgagcacagccagtcaaccattcactggacacggtggctcagacgcttagtgcatccggcccgcggctacggtgggtcggccatgaacctaacgggccggctccagttccaccagagacggggcgagctcaggcaccaagacagatag
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| Protein seq | MEAPAGGGYLLGGQPARCSGGHSIGSNGEGFGGHPATSPPSSSWVSLPREHSQSTIHWTRWLRRLVHPARGYGGSAMNLTGRLQFHQRRGELRHQDR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0621400 | RBH | 0.272201 | 0.533457 | 2.292063 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43120 | RBH | 0.0 | 0.000000 | 0.059377 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0621400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023890 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023750 | RBH | 0.000000 | 3.008880 | 1.659967 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023680 | RBH | 0.000000 | 0.020610 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023790 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024300 | RBH | 0.187715 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0434400 | RBH | 0.106769 | 2.8915175 | 0.6327325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023710 | RBH | 0.511774 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023810 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
