Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0541600 | OGI:07059240 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:21391503-21393560 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATATTAAAATAGCATTCTATAAATTTTGTGGATCATAAATGTTACTTTCATCGTATTGTCATGATGAGCCCAAATTCATTAACAAGATATACTTTGCTAGAGAGATGAAGAACAACAGCACCAGACACGGCTACTACCATGGCAATGAATAAGAGATGCATCTGTACTGCACACTTTGTAGATCAGCTAGAAAAAAAAAGGGGTTCAACAACACATCAGAGTCAGTGGTGGCATAGGAGACGCCATTTTTGCAAGCGTAGTGATAACCCTTTCTCTTCCTCGCCGTCGTCGTCGTCGCCGCCACTGCCACTGTTTTTTCAACAGTACCTGGTCCGATTAAAACAAGAGCAACCCCTGCAACCTCAATTGCATCCTGGATGTAAGTGGTTAAACTAAAGATTAGATGGACGAAAAAGAGTTCAACATAATATTATGAAAAGCTCGAAAGCTACAGAAATTAATGAATTTGCAAATTTCACATTAATTAGATTAGAAAAGCTCGAAAGGTACAGTTGCATGGATTCCATTAAGAGACTGAAACATCTGAAATGAAAACATCTGAAATGAAATGAAATGAAAACTGGCCGCAGCACCAGACATCTTGGAAGCGGCTTTGGCAATCTCCTCCTTTGCTTCCCCAAGATAACGAAGAAGAATCTCAAAAGATTGGTTATCCTGATCACCGAGCCTAACTATCTCATTCGCAGTGCTTTGCAAAACATTATGCCTGAATACTCTTGCCTGGGCCATCCCAACATCATCTGGAAAGGTCCCAAGGTGTGCTGGGATAGAGTCACGAGCTTTCTTGGTCCATCGCATCATTAATATGGCATTGAGGAATAGTACGCACGCCCAGATGTAGCATAACCTGCAAAAATACATTTTGCCATTCCGATGAAAGTCAAGTTAATTCTACTTGCAAGTGAGGCAAGATGTTTTACTAAAAATTATGGTAAATAACTGACACTTATCGCATGACATCAGAGAATGCCAAAGTACTCACTCAAACCACACTCGCACGTTTAACTCTGACATGTGTTATGAAGAATCACACTGTACGTCGTTTTGCACCATTTTTCCCTATCAATTTGATCAAAAAGAAGAAGAATGTTATGTAAACGTTAATATCTATCCACCAGTAGCACATCTAATGTTATTTACAGCATAATCAACTAATGTTTTGACATAATAACCACCAGTAGCACATTTCAGCAGCCTCATCCTCGCTGGGCAACCACATCTTCTGGTTTAATCTGGTTTACCCTGCAGAATTCAATTTAATCTTTTAACTCTTCTTCTTAATTTTTTTTGAACTTAACAGCTTACAAAAATGTAATACAGAAAAGAGGGGATCAAGATTTTTATAAAATGCGTCGCTGTCTGATTCTAAAGGACTAGTCGTTCTCTCAGAAGAACTATCTGCTACTTTCTCAGACATAGCCTCAAAGAAAACTTCTCTCCTTTCAGTGGAAGCTTTCCTGAGAGTGGAACATTACAGAAAGTTTCAGGACAAGGTCGAAAGAAACTAAATCATATATAAGAACAAAAAAAAGTGCATTTACAAACATAACTCATTCTGTAACCTACACTCGCTTAACCGTTGGTTCACAAGAATCTGGAGCAGTAAACCGAGATCTGCTTCTACCTCGTGTGAAGAATGGATAAAAATGTTCGAATCCTCCTCGGCCAAGTAATAAAAATCATATCAACACCAACGGTAGACATAACGAAAAAATCCCTGAAAAATTTTTTTACAAAAGGAAAGGTAGTTGTTCTAGATCTATGGAACATTGAAACTTGAAAGTTTAAAAAATGTACCGACGACCTTGGGCTTGGCGGCTGCCGTTGGCGCAACAGAGAAGCGGAGCGGCGCGTGCGCGGCCATGGGGCTGGCCCGCGCGTCGTCGAGGTCACGGGCGGAGCTGTAGACCGCGCGGCGGAGCCACCCGTTGGATCTCGCCCGCCGCCTGTCCCACTCCGTGGCGGCGCCGACGAGGGAGTCGTTCGGCATCGCGTACATTTCGCCTCCATCTCTATTGTGTTTGATTCGATGAGAT
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| CDS seq | ATGTATTTTTGCAGGTTATGCTACATCTGGGCGTGCGTACTATTCCTCAATGCCATATTAATGATGCGATGGACCAAGAAAGCTCGTGACTCTATCCCAGCACACCTTGGGACCTTTCCAGATGATGTTGGGATGGCCCAGGCAAGAGTATTCAGGCATAATGTTTTGCAAAGCACTGCGAATGAGATAGTTAGGCTCGGTGATCAGGATAACCAATCTTTTGAGATTCTTCTTCGTTATCTTGGGGAAGCAAAGGAGGAGATTGCCAAAGCCGCTTCCAAGATGTCTGGTGCTGCGGCCAGTTTTCATTTCATTTCATTTCAGATGTTTTCATTTCAGATGTTTCAGTCTCTTAATGGAATCCATGCAACTGTACCTTTCGAGCTTTTCTAA |
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| Protein seq | MYFCRLCYIWACVLFLNAILMMRWTKKARDSIPAHLGTFPDDVGMAQARVFRHNVLQSTANEIVRLGDQDNQSFEILLRYLGEAKEEIAKAASKMSGAAASFHFISFQMFSFQMFQSLNGIHATVPFELF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0541600 | OsNip_07t0541600-02 | Chr07 | 21391503 | 21393262 | - | RAP2018-11-26 | ||
| CDS seq | ATGTATTTTTGCAGGTTATGCTACATCTGGGCGTGCGTACTATTCCTCAATGCCATATTAATGATGCGATGGACCAAGAAAGCTCGTGACTCTATCCCAGCACACCTTGGGACCTTTCCAGATGATGTTGGGATGGCCCAGGCAAGAGTATTCAGGCATAATGTTTTGCAAAGCACTGCGAATGAGATAGTTAGGCTCGGTGATCAGGATAACCAATCTTTTGAGATTCTTCTTCGTTATCTTGGGGAAGCAAAGGAGGAGATTGCCAAAGCCGCTTCCAAGATGTCTGGTGCTGCGGCCAGTTTTCATTTCATTTCATTTCAGATGTTTTCATTTCAGATGTTTCAGTCTCTTAATGGAATCCATGCAACTGTACCTTTCGAGCTTTTCTAA
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| Protein seq | MYFCRLCYIWACVLFLNAILMMRWTKKARDSIPAHLGTFPDDVGMAQARVFRHNVLQSTANEIVRLGDQDNQSFEILLRYLGEAKEEIAKAASKMSGAAASFHFISFQMFSFQMFQSLNGIHATVPFELF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0541600 | OsNip_07t0541600-01 | Chr07 | 21392000 | 21393560 | - | RAP2018-11-26 | ||
| CDS seq | GTGTTATGCTACATCTGGGCGTGCGTACTATTCCTCAATGCCATATTAATGATGCGATGGACCAAGAAAGCTCGTGACTCTATCCCAGCACACCTTGGGACCTTTCCAGATGATGTTGGGATGGCCCAGGCAAGAGTATTCAGGCATAATGTTTTGCAAAGCACTGCGAATGAGATAGTTAGGCTCGGTGATCAGGATAACCAATCTTTTGAGATTCTTCTTCGTTATCTTGGGGAAGCAAAGGAGGAGATTGCCAAAGCCGCTTCCAAGATGTCTGGTGCTGCGGCCAGTTTTCATTTCATTTCATTTCAGATGTTTTCATTTCAGATGTTTCAGTCTCTTAATGGAATCCATGCAACTGTACCTTTCGAGCT
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| Protein seq | VLCYIWACVLFLNAILMMRWTKKARDSIPAHLGTFPDDVGMAQARVFRHNVLQSTANEIVRLGDQDNQSFEILLRYLGEAKEEIAKAASKMSGAAASFHFISFQMFSFQMFQSLNGIHATVPFE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.317325 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35720 | RBH | 0.0 | 0.0 | 0.365048 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0541600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0016050 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0015980 | RBH | 0.0 | 0.0 | 0.107935 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0015940 | RBH | 0.0 | 0.0 | 0.336946 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018050 | RBH | 0.0 | 0.070205 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0015930 | RBH | 0.0 | 0.0 | 1.106420 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0016410 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0329000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017930 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015850 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017960 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018250 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0015880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015840 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0015750 | RBH | 0.0 | 0.0 | 0.835461 |
