Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0015980 | OGI:07053930 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:19672355-19675557 | ||||||||
| Gene Symbol | GATA23, OsGATA23, OsGATA23a, OsGATA23b | ||||||||||
| DNA seq | tcagaaggggctatacaaaactacaatgaaccatatactaaagttttctcttgtacatagacgtccggccgcaggttcttgaattatgtcctgcttggtggcatgtgtggtaaaacctacgaggaaaaggcatttcatccgcatgatcattgtcttggttttcttcttcaacggaatcaccctcatttgctgctttactcttttcactccttcttttcttcttttcatgctggcagcctcaccgccagatttatacctattcacttttggccttcctctgcttctctttctcacgggtggaagtacatcaccagtattatctccactctcttcctcactcgacatatcatatacactgtcgacgtcagcagcgccaacatcttcatttccatcttcggataataccgttggccttgatatttgtctagttgctcgctttggggctgctccactattgtcatcgtcatccaaagataaccgacttttcatgtcttccaaaagttgattcatgactgtcattgccatcttaaatgtctgcacatctttgtttgcaacactagccacctccacagactttttattcagcattacatgtctataactcctcgattgtgaagcatcgacatcatctttgtatccatgtagatgaggtggaacagaatcccgtgcattcttcgtccatcttttcaatatgtacctatctggaatttttgacaacccatactgaacaagcacctaacaggacaaaacaatgaattacaaaataatcaagaatagttcaataaaagttgcaaaggaagaaacatatacccttaaaacgtggctgcacagtatccccttatgctcaaacatcttgcagacgcatgaaaattcctctctttccacatcatagtacacctgatattccttccgaaggaatgagctagactcttctgtgcacattcgtacaacttgcactgtactttcgtcctccctaggtttcaccatgtatgataaactatcagttaactcctcagagaacaactgaaaaacagctctagtatatacttgggaagcatgaatctctatcggtgagcttgttttaatttcaaccttgtcctgcaccgagtgacaccaaaagatgattataataatcaattaaataagaacaacaaaaatgccaaaatggatacttacgttactagtttggaattcctctgagtcgtccttttgcagtttctcattgaaaaaccggtcatacctcttaacaaacctgttcatagaactagagggtttcacaaacattttgaacacatggtttgcagactcacttctttgcgtagtagtcatcccagcaaagaacctatgggcaaaatatacaaacgcccattggcgccttatgtcccaaatgtgacgcaaatatacactgttttctagttggtaatcactaatcagtttgtgccaagcagcttcaaactcctcctctgtcagtgtctgcgtgagaaccttgtgaaatgctttcttgaatgatcgacgcttcgagtagatgttccccataaattcttttgctttcttcagaacgtgccacttgcacacacgatggattgtgttgggaaatacctttcgaatggcagctgccattgaaggacagttgtctgcaataaaaaggtcaaatacttacaataagcatagtaaactttgaaatcctatcgaactctgaaaacgaccaaatacgcgcatacctgttaaaattccaataggttccttcccattcatgcactctttgaatgtctcgaacaaccatgcaaacgattctttggtctcttctctcagcagggcacacccaaagaaggtactctgaaagtgattgtttaccccaacaaatggtgcaaatggcatattatacctatttgtcttgtacgtagtatcaaatgtaatgacatcaccaaaatgctcataattcaatctagacacagcatgagaccagaatatgttcttcacacggcaagcctcgtcgagctgtatactataaaagaaattcttactccttttttgcaaatccttcaggacatttagtgttttttacatgtcgtcgctgcactcatcccgcctaattgcatacgctagcctatccatagcttttctcgtgaatggaacaatggaagctccgccatgcatgccagacaacaaaccatacatatttgtcagactcatgctattgtccaccatctcttcaataataccccgagtcccctcatctatttgattgtgtgaatgataattctttgtaacccctatactctttttcattggatagttgtgtgcagcgacgaccttagttactgtccagcttcctgcacctttcgacctatttatcttgatcattgctgggcatccaattcgaatagaaggttctttggtatttgtgttcttcccctgcagggatcaattacaaattaacacatactccatcacaaaaaactatcagttcattgccacaacaaacatactgtcataaatgttggtacctggtgtgaacaacaaatctgtcgcattgttctctgcttattaacattaaggcgctctttattcagacggatcccaaatcctttactaacagcataaacattataaaaattaaaggtatctctctcagtcttaaatctttgccccaatgcgggagcaagaatattaggatcagcatactccggaggaatggcagcactactgtcaacattatctactaccattctgaaaagattgtattcattcagtcttcagaacataccaccaacaacatgccattaaaatcaaataaagtgaaaagaaatcaacatgagatccaaacctttccatcggtatccctgccccctctttttcagctgggtttccttcagtccaatctagtgaaggagcatacttctgtaatagagacagaaaaggattttatactactcaattccaaagtatatgatcaactgacaactatgccaagaaagataccttgtcaccggagttccatgacctgaatcatgcgagccaaccgtcaatgacacgtcctcctccatggctacaggactgcagaacacaactcaatatgcatcagtatcggccgattatttctacaattcagaaaatatggtatcttgatctcaccttgtctggacaccatgtgggattgaatcaccatcaggtatgccgaaggaagggttgcattcatccat
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| CDS seq | atggatgaatgcaacccttccttcggcatacctgatggtgattcaatcccacatggtgtccagacaagtcctgtagccatggaggaggacgtgtcattgacggttggctcgcatgattcaggtcatggaactccgaagtatgctccttcactagattggactgaaggaaacccagctgaaaaagagggggcagggataccgatggaaagactgaatgaatacaatcttttcagaatggtagtagataatgttgacagtagtgctgccattcctccggagtatgctgatcctaatattcttgctcccgcattggggcaaagatttaagactgagagagatacctttaatttttataatgtttatgctgttagtaaaggatttgggatccgtctgaataaagagcgccttaatgttaataagcagagaacaatgcgacagatttgttgttcacaccaggggaagaacacaaataccaaagaaccttctattcgaattggatgcccagcaatgatcaagataaataggtcgaaaggtgcaggaagctggacagtaactaaggtcgtcgctgcacacaactatccaatgaaaaagagtataggggttacaaagaattatcattcacacaatcaaatagatgaggggactcggggtattattgaagagatggtggacaatagcatgagtctgacaaatatgtatggtttgttgtctggcatgcatggcggagcttccattgttccattcacgagaaaagctatggataggctagcgtttgttaagaggtatgaccggtttttcaatgagaaactgcaaaaggacgactcagaggaattccaaactagtaacgaatatcaggtgtactatgatgtggaaagagaggaattttcatgcgtctgcaagatgtttgagcataaggggatactgtgcagccacgttttaagggtgcttgttcagtatgggttgtcaaaaattccagataggtacatattgaaaagatggacgaagaatgcacgggattctgttccacctcatctacatggatacaaagatgatgtcgatgcttcacaatcgaggagttatagacatgtaatgctgaataaaaagtctgtggaggtggctagtgttgcaaacaaagatgtgcagacatttaagatggcaatgacagtcatgaatcaacttttggaagacatgaaaagtcggttatctttggatgacgatgacaatagtggagcagccccaaagcgagcaactagacaaatatcaaggccaacggtattatccgaagatggaaatgaagatgttggcgctgctgacgtcgacagtgtatatgatatgtcgagtgaggaagagagtggagataatactggtgatgtacttccacccgtgagaaagagaagcagaggaaggccaaaagtgaataggtataaatctggcggtgaggctgccagcatgaaaagaagaaaagaaggagtgaaaagagtaaagcagcaaatgagggtgattccgttgaagaagaaaaccaagacaatgatcatgcggatgaaatgccttttcctcgtaggttttaccacacatgccaccaagcaggacataattcaagaacctgcggccggacgtctatgtacaagagaaaactttagtatatggttcattgtagttttgtatagccccttctga
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| Protein seq | MDECNPSFGIPDGDSIPHGVQTSPVAMEEDVSLTVGSHDSGHGTPKYAPSLDWTEGNPAEKEGAGIPMERLNEYNLFRMVVDNVDSSAAIPPEYADPNILAPALGQRFKTERDTFNFYNVYAVSKGFGIRLNKERLNVNKQRTMRQICCSHQGKNTNTKEPSIRIGCPAMIKINRSKGAGSWTVTKVVAAHNYPMKKSIGVTKNYHSHNQIDEGTRGIIEEMVDNSMSLTNMYGLLSGMHGGASIVPFTRKAMDRLAFVKRYDRFFNEKLQKDDSEEFQTSNEYQVYYDVEREEFSCVCKMFEHKGILCSHVLRVLVQYGLSKIPDRYILKRWTKNARDSVPPHLHGYKDDVDASQSRSYRHVMLNKKSVEVASVANKDVQTFKMAMTVMNQLLEDMKSRLSLDDDDNSGAAPKRATRQISRPTVLSEDGNEDVGAADVDSVYDMSSEEESGDNTGDVLPPVRKRSRGRPKVNRYKSGGEAASMKRRKEGVKRVKQQMRVIPLKKKTKTMIMRMKCLFLVGFTTHATKQDIIQEPAAGRLCTRENFSIWFIVVLYSPF |
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| Function | Protein FAR-RED ELONGATED HYPOCOTYL 3 [UniProtKB/Swiss-Prot:Q9LIE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0015980 | OsKeNa_07g0015980.01 | Chr07 | 19672355 | 19675557 | - | NAM | ||
| CDS seq | atggatgaatgcaacccttccttcggcatacctgatggtgattcaatcccacatggtgtccagacaagtcctgtagccatggaggaggacgtgtcattgacggttggctcgcatgattcaggtcatggaactccgaagtatgctccttcactagattggactgaaggaaacccagctgaaaaagagggggcagggataccgatggaaagactgaatgaatacaatcttttcagaatggtagtagataatgttgacagtagtgctgccattcctccggagtatgctgatcctaatattcttgctcccgcattggggcaaagatttaagactgagagagatacctttaatttttataatgtttatgctgttagtaaaggatttgggatccgtctgaataaagagcgccttaatgttaataagcagagaacaatgcgacagatttgttgttcacaccaggggaagaacacaaataccaaagaaccttctattcgaattggatgcccagcaatgatcaagataaataggtcgaaaggtgcaggaagctggacagtaactaaggtcgtcgctgcacacaactatccaatgaaaaagagtataggggttacaaagaattatcattcacacaatcaaatagatgaggggactcggggtattattgaagagatggtggacaatagcatgagtctgacaaatatgtatggtttgttgtctggcatgcatggcggagcttccattgttccattcacgagaaaagctatggataggctagcgtttgttaagaggtatgaccggtttttcaatgagaaactgcaaaaggacgactcagaggaattccaaactagtaacgaatatcaggtgtactatgatgtggaaagagaggaattttcatgcgtctgcaagatgtttgagcataaggggatactgtgcagccacgttttaagggtgcttgttcagtatgggttgtcaaaaattccagataggtacatattgaaaagatggacgaagaatgcacgggattctgttccacctcatctacatggatacaaagatgatgtcgatgcttcacaatcgaggagttatagacatgtaatgctgaataaaaagtctgtggaggtggctagtgttgcaaacaaagatgtgcagacatttaagatggcaatgacagtcatgaatcaacttttggaagacatgaaaagtcggttatctttggatgacgatgacaatagtggagcagccccaaagcgagcaactagacaaatatcaaggccaacggtattatccgaagatggaaatgaagatgttggcgctgctgacgtcgacagtgtatatgatatgtcgagtgaggaagagagtggagataatactggtgatgtacttccacccgtgagaaagagaagcagaggaaggccaaaagtgaataggtataaatctggcggtgaggctgccagcatgaaaagaagaaaagaaggagtgaaaagagtaaagcagcaaatgagggtgattccgttgaagaagaaaaccaagacaatgatcatgcggatgaaatgccttttcctcgtaggttttaccacacatgccaccaagcaggacataattcaagaacctgcggccggacgtctatgtacaagagaaaactttagtatatggttcattgtagttttgtatagccccttctga
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| Protein seq | MDECNPSFGIPDGDSIPHGVQTSPVAMEEDVSLTVGSHDSGHGTPKYAPSLDWTEGNPAEKEGAGIPMERLNEYNLFRMVVDNVDSSAAIPPEYADPNILAPALGQRFKTERDTFNFYNVYAVSKGFGIRLNKERLNVNKQRTMRQICCSHQGKNTNTKEPSIRIGCPAMIKINRSKGAGSWTVTKVVAAHNYPMKKSIGVTKNYHSHNQIDEGTRGIIEEMVDNSMSLTNMYGLLSGMHGGASIVPFTRKAMDRLAFVKRYDRFFNEKLQKDDSEEFQTSNEYQVYYDVEREEFSCVCKMFEHKGILCSHVLRVLVQYGLSKIPDRYILKRWTKNARDSVPPHLHGYKDDVDASQSRSYRHVMLNKKSVEVASVANKDVQTFKMAMTVMNQLLEDMKSRLSLDDDDNSGAAPKRATRQISRPTVLSEDGNEDVGAADVDSVYDMSSEEESGDNTGDVLPPVRKRSRGRPKVNRYKSGGEAASMKRRKEGVKRVKQQMRVIPLKKKTKTMIMRMKCLFLVGFTTHATKQDIIQEPAAGRLCTRENFSIWFIVVLYSPF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.107935 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0541600 | RBH | 0.0 | 0.0 | 1.317325 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g32110 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0541600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0016050 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0010270 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0015940 | RBH | 0.0 | 0.0 | 0.336946 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0015870 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0015930 | RBH | 0.0 | 0.0 | 1.106420 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0310000 | SBH | 12.653452 | 16.474758 | 18.5724135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0016410 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0329000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0015680 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015850 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0015850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0016100 | RBH | 0.0 | 0.0 | 0.145911 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0015880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015840 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0015750 | RBH | 0.0 | 0.0 | 0.835461 |
