Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsGoSa_07g0017960 | OGI:07059240 | 5/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr07:21953727-21954833 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ctaccatggcaatgaataagagatgcatctgtactgcacactttgtagatcagctagAaaaaaaaaggggttCAAcaacacatcagagtcagtggtggcataggagacgccatttttgcaagcgtagtgataaccctttctcttcctcgccgtcgtcgtcgtcgccgccactgccactgttttttcaacagtacctggtccgattaaaacaagagcaaCccctgcaacctcaattgcatcctggatgtaagtggttaaactaaagattagatggacgaaaaagagttcaacataatattatgaaaagctcgaaagctacagaaattaatgaatttgcaaatttcacattaattagattagaaaagctcgaaaggtacagttgcatggattccattaagagactgaaacatctgaaatgaaaacatctgaaatgaaatgaaatgaaaactggccgcagcaccagacatcttggaagcggctttggcaatctcctcctttgcttccccaagataacgaagaagaatctcaaaagattggttatcctgatcaccgagcctaactatctcattcgcagtgctttgcaaaacattatgcctgaatactcttgcctgggccatcccaacatcatctggaaaggtcccaaggtgtgctgggatagagtcacgagctttcttggtccatcgcatcattaatatggcattgaggaatagtacgcacgcccagatgtagcataacctgcaaaaatacattttgccattccgatgaaagtcaagttaattctacttgcaagtgaggcaagatgttttactaaaaattatggtaaataactgacacttatcgcatgacatcagagaatgccaaagtactcactcaaaccacactcgcacgtttaactctgacatgtgttatgaagaatcacactgtacgtcgttttgcaccattttTCCCTATCAATTTGATCAAAAAGAAGAAGAATGTTATGTAAACGTTAATATCTATCCACCAGTAGCACATCTAATGTTATTTACAGCATAATCAACTAATGTTTTGACATAATAACCACCAGTAGCACATTTCAGCAGCCTCATCCTCGCTGGGCAACCACAT
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CDS seq | ATGTGGTTGCCCAGCGAGGATGAGGCTGCTGAAATgttatgctacatctgggcgtgcgtactattcctcaatgccatattaatgatgcgatggaccaagaaagctcgtgactctatcccagcacaccttgggacctttccagatgatgttgggatggcccaggcaagagtattcaggcataatgttttgcaaagcactgcgaatgagatagttaggctcggtgatcaggataaccaatcttttgagattcttcttcgttatcttggggaagcaaaggaggagattgccaaagccgcttccaagatgtctggtgctgcggccagttttcatttcatttcatttcagatgttttcatttcagatgtttcagtctcttaatggaatccatgcaactgatgcaattgaggttgcagggGttgctcttgttttaatcggaccaggtactgttgaaaaaacagtggcagtggcggcgacgacgacgacggcgaggaagagaaagggttatcactacgcttgcaaaaatggcgtctcctatgccaccactgactctgatgtgttgTTGaaccccttttttttTctagctgatctacaaagtgtgcagtacagatgcatctcttattcattgccatggtag
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Protein seq | MWLPSEDEAAEMLCYIWACVLFLNAILMMRWTKKARDSIPAHLGTFPDDVGMAQARVFRHNVLQSTANEIVRLGDQDNQSFEILLRYLGEAKEEIAKAASKMSGAAASFHFISFQMFSFQMFQSLNGIHATDAIEVAGVALVLIGPGTVEKTVAVAATTTTARKRKGYHYACKNGVSYATTDSDVLLNPFFFLADLQSVQYRCISYSLPW |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsGoSa_07g0017960 | OsGoSa_07g0017960.01 | Chr07 | 21953727 | 21954833 | - | NAM | ||
CDS seq | ATGTGGTTGCCCAGCGAGGATGAGGCTGCTGAAATgttatgctacatctgggcgtgcgtactattcctcaatgccatattaatgatgcgatggaccaagaaagctcgtgactctatcccagcacaccttgggacctttccagatgatgttgggatggcccaggcaagagtattcaggcataatgttttgcaaagcactgcgaatgagatagttaggctcggtgatcaggataaccaatcttttgagattcttcttcgttatcttggggaagcaaaggaggagattgccaaagccgcttccaagatgtctggtgctgcggccagttttcatttcatttcatttcagatgttttcatttcagatgtttcagtctcttaatggaatccatgcaactgatgcaattgaggttgcagggGttgctcttgttttaatcggaccaggtactgttgaaaaaacagtggcagtggcggcgacgacgacgacggcgaggaagagaaagggttatcactacgcttgcaaaaatggcgtctcctatgccaccactgactctgatgtgttgTTGaaccccttttttttTctagctgatctacaaagtgtgcagtacagatgcatctcttattcattgccatggtag
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Protein seq | MWLPSEDEAAEMLCYIWACVLFLNAILMMRWTKKARDSIPAHLGTFPDDVGMAQARVFRHNVLQSTANEIVRLGDQDNQSFEILLRYLGEAKEEIAKAASKMSGAAASFHFISFQMFSFQMFQSLNGIHATDAIEVAGVALVLIGPGTVEKTVAVAATTTTARKRKGYHYACKNGVSYATTDSDVLLNPFFFLADLQSVQYRCISYSLPW
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.000000 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0541600 | RBH | 0.0 | 0.0 | 1.317325 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35720 | RBH | 0.0 | 0.0 | 0.365048 |
Nipponbare | IRGSP 1.0 | RAP-db | Os07g0541600 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0016050 | SBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0015980 | SBH | 0.0 | 0.0 | 0.107935 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0015940 | SBH | 0.0 | 0.0 | 0.336946 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018050 | RBH | 0.0 | 0.070205 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0015930 | SBH | 0.0 | 0.0 | 1.106420 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0016410 | SBH | 0.0 | 0.0 | 0.000000 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0329000 | SBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017930 | RBH | 0.000000 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015850 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018250 | SBH | 0.000000 | 0.000000 | 0.000000 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0015880 | SBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015840 | SBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0015750 | SBH | 0.0 | 0.0 | 0.835461 |