Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_07g0017960 OGI:07059240 | 5/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr07:21953727-21954833
Gene Symbol -
DNA seq

ctaccatggcaatgaataagagatgcatctgtactgcacactttgtagatcagctagAaaaaaaaaggggttCAAcaacacatcagagtcagtggtggcataggagacgccatttttgcaagcgtagtgataaccctttctcttcctcgccgtcgtcgtcgtcgccgccactgccactgttttttcaacagtacctggtccgattaaaacaagagcaaCccctgcaacctcaattgcatcctggatgtaagtggttaaactaaagattagatggacgaaaaagagttcaacataatattatgaaaagctcgaaagctacagaaattaatgaatttgcaaatttcacattaattagattagaaaagctcgaaaggtacagttgcatggattccattaagagactgaaacatctgaaatgaaaacatctgaaatgaaatgaaatgaaaactggccgcagcaccagacatcttggaagcggctttggcaatctcctcctttgcttccccaagataacgaagaagaatctcaaaagattggttatcctgatcaccgagcctaactatctcattcgcagtgctttgcaaaacattatgcctgaatactcttgcctgggccatcccaacatcatctggaaaggtcccaaggtgtgctgggatagagtcacgagctttcttggtccatcgcatcattaatatggcattgaggaatagtacgcacgcccagatgtagcataacctgcaaaaatacattttgccattccgatgaaagtcaagttaattctacttgcaagtgaggcaagatgttttactaaaaattatggtaaataactgacacttatcgcatgacatcagagaatgccaaagtactcactcaaaccacactcgcacgtttaactctgacatgtgttatgaagaatcacactgtacgtcgttttgcaccattttTCCCTATCAATTTGATCAAAAAGAAGAAGAATGTTATGTAAACGTTAATATCTATCCACCAGTAGCACATCTAATGTTATTTACAGCATAATCAACTAATGTTTTGACATAATAACCACCAGTAGCACATTTCAGCAGCCTCATCCTCGCTGGGCAACCACAT

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CDS seq

ATGTGGTTGCCCAGCGAGGATGAGGCTGCTGAAATgttatgctacatctgggcgtgcgtactattcctcaatgccatattaatgatgcgatggaccaagaaagctcgtgactctatcccagcacaccttgggacctttccagatgatgttgggatggcccaggcaagagtattcaggcataatgttttgcaaagcactgcgaatgagatagttaggctcggtgatcaggataaccaatcttttgagattcttcttcgttatcttggggaagcaaaggaggagattgccaaagccgcttccaagatgtctggtgctgcggccagttttcatttcatttcatttcagatgttttcatttcagatgtttcagtctcttaatggaatccatgcaactgatgcaattgaggttgcagggGttgctcttgttttaatcggaccaggtactgttgaaaaaacagtggcagtggcggcgacgacgacgacggcgaggaagagaaagggttatcactacgcttgcaaaaatggcgtctcctatgccaccactgactctgatgtgttgTTGaaccccttttttttTctagctgatctacaaagtgtgcagtacagatgcatctcttattcattgccatggtag

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Protein seq

MWLPSEDEAAEMLCYIWACVLFLNAILMMRWTKKARDSIPAHLGTFPDDVGMAQARVFRHNVLQSTANEIVRLGDQDNQSFEILLRYLGEAKEEIAKAASKMSGAAASFHFISFQMFSFQMFQSLNGIHATDAIEVAGVALVLIGPGTVEKTVAVAATTTTARKRKGYHYACKNGVSYATTDSDVLLNPFFFLADLQSVQYRCISYSLPW

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_07g0017960 OsGoSa_07g0017960.01 Chr07 21953727 21954833 - NAM
CDS seq

ATGTGGTTGCCCAGCGAGGATGAGGCTGCTGAAATgttatgctacatctgggcgtgcgtactattcctcaatgccatattaatgatgcgatggaccaagaaagctcgtgactctatcccagcacaccttgggacctttccagatgatgttgggatggcccaggcaagagtattcaggcataatgttttgcaaagcactgcgaatgagatagttaggctcggtgatcaggataaccaatcttttgagattcttcttcgttatcttggggaagcaaaggaggagattgccaaagccgcttccaagatgtctggtgctgcggccagttttcatttcatttcatttcagatgttttcatttcagatgtttcagtctcttaatggaatccatgcaactgatgcaattgaggttgcagggGttgctcttgttttaatcggaccaggtactgttgaaaaaacagtggcagtggcggcgacgacgacgacggcgaggaagagaaagggttatcactacgcttgcaaaaatggcgtctcctatgccaccactgactctgatgtgttgTTGaaccccttttttttTctagctgatctacaaagtgtgcagtacagatgcatctcttattcattgccatggtag

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Protein seq

MWLPSEDEAAEMLCYIWACVLFLNAILMMRWTKKARDSIPAHLGTFPDDVGMAQARVFRHNVLQSTANEIVRLGDQDNQSFEILLRYLGEAKEEIAKAASKMSGAAASFHFISFQMFSFQMFQSLNGIHATDAIEVAGVALVLIGPGTVEKTVAVAATTTTARKRKGYHYACKNGVSYATTDSDVLLNPFFFLADLQSVQYRCISYSLPW

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0541600 RBH 0.0 0.0 1.317325
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g35720 RBH 0.0 0.0 0.365048
Nipponbare | IRGSP 1.0 | RAP-db Os07g0541600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0016050 SBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0015980 SBH 0.0 0.0 0.107935
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0015940 SBH 0.0 0.0 0.336946
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0018050 RBH 0.0 0.070205 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0015930 SBH 0.0 0.0 1.106420
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0016410 SBH 0.0 0.0 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0329000 SBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0017930 RBH 0.000000 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0015850 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0018250 SBH 0.000000 0.000000 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0015880 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G015840 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0015750 SBH 0.0 0.0 0.835461
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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