Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0539700 | OGI:07059420 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:21265863-21269388 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGGGCGAATTTGCAAACATTCCCGGGCGAGCCGGTCATGTTTGACTCCACACTTGCGCACTCAATCCGGCATACGTAGCTATCGGCACAGCGGCGCTAGCTAGCTAGGCCATCTTTAGTGCAAACCATGGCGCCGTTCGTTAAGGGTAGAAACCTCTCTCTCCCCATCTGCTGCGCCGATGCTCGCCGGCTATGTCTACGGTGGTGGCATCCTCGCCGTCGTTCTCGCCGTCGTCGTCGTCACGCTGCCGCTGCCGGCCACGGCGGCTCCGGTCGCTGAATGCGACCCCGGTGTCGCCAACACGAACGTGACCGGCAACAGCGCTTTCGACAGGAACCTGGGCCTCCTCGCCGCGGCGCTCGCCGCCAACGCCTCTGCCGCCGGCGCCCCGGGCTTCGCCGTCCGCACCGCCGGCGCGGCGCCCGACCAGGTCTACGCGCTGGCGCTCTGCCGCGGCGACGTGAACGCCTCGGCTTGCCGCGCGTGCGTCGCGGCGGCGTTCGTCGACGCGAAGGGCGTCTGCCCCGGCGGCATCTCCCTGTACGAGGACGCCTGCTTGATCCGCTTCACCGGCCAGAGCTTCATGGATTTCCTCAGGCCGGACAAGTGGCAGGTCTCCCAGATGACGTACTGAACTATTCTATATATAAATCCGACCATTTCTTCCTAACCATATCCATGGTGGAATCAGAGAAACTGATTTGCTCCTCGTCCTAAACAGTTGGATTCCCGGCCAAGCCTCGGGGAACGTCAAGGTGCCGGAGGTCGGCTGGTTCAACGCCGCCGTGGCAAAGATCCTCGCCGCCCTGGTCGAGCACGCCTGGGCCACGACGACGACGACGACGACGGGCAACAACTCGACCACCACCATCAAGTATTTCGCCACGGGTGAGGAGAGCTTCAACCCCAAGATCTACGGGTTCGCGCAGTGCGTGCCGGTCCTGACGCCGGAGCAGTGCAAGGAATGCCTTAGGAGCCTCCACGATAATGCGAAAACGGTGTACATGGGCAACAGCCTCCGGTGGGTTGGTATCTATTCGGTGTGGTGCAGGCTGATGTATAGCGTGCGGCCGTTCTACGGAGGCCGGGCGACGCTGCAGCTCTCGCCGCCGCCACCACCGGTCGTCGAGACTCCGGTTGAGGCTGGAGCAGGTATGACCCAGGGTTTTCAATTTCGAAATTGGTTTTTTTTGCTGGGGGGACCGAAATTTTTTGGCCGAAATTAGTTGAAATTTTGACTGTTTTTTAATGAATTTGAATAAAATTTGACCAAATTCACAAAAAATTGCAAAAAACCGAAAATTTTGGGTGAGATGTGAGCTTGCTGGGGGGGCAAAATTACCGAAATTTCGAACCGTAATTTCAAACCCTAGTATGATGAACAGGAGCGTGCAATTTAGTTATGTTCCAACAAATAAATATGACTCGATCAAGGTTGTGCGAATATAAAGAGTTCATGTTTTGTTTGAGCAGGGAAGAAAAAGAGTGCAGCAGGAGTCGCTGCAGGCCTGGCTTGTTCAGTTTTGGTACTGTTGATCCTTGCAGTTTTTGCATTCGTTCGGTTCAAGAGGAGGACCAAGGCTGTCGAGGCTGACCACCGTGAGTAGCATACAGTCTCTGCTCAGTTTCTGGAATTTGCTGTTCCCTGACGTAATTTTTCTTGTCAAATGGCAACAGCATTGAAGAAGATAACAAGAGCACAATGCATGATTTTTGATCTGCCTACGCTGCAAGAGGCAACTGAGAACTTCTCGGAGAACAATAAACTGGGAGAAGGTGGTTTTGGTTCAGTATACAAGGTAAGTTATATGCATGAAAAATAGCTTCAGATGCCATTGATCATTCGGTAGAGGACTATATATTGTTCATTCTCTGAATAATAATCTGTTCAGGGAGTACTCTCAGATGGACAAGAAGTAGCAGTCAAGAAACTTTTAGGAACAAGTGGGCATGGATTAGATCAGCTACACAATGAGGTTCTGTTATTGGCAGAGCTTCAGCATAAGAACCTTGTTCGGCTACATGGATTTTGCTTGCATCAGGGGGAGACATTACTGGTTTATGAATACATCAAGAACGGGAGCCTGGACAACTTCCTATTCGGTAATTTTACTTCCCATTCAAACATATCTTATTTTTTTACACTTCTTGAGGAGATACCAAAAGGTATAATATCTTTCAGTGTAGATTTTGGTGCCCCTACCAATAATTAAATATTAAAAATTATGGTATCAACTGACAACTGTACCTCCTCATGGACCATTTAATCACACATTTCTTTAGAGTGGAGTATCTAAATCTATAACACTGCGATTAGAAATATTTTACTTCAGACAAAGTATGTGGAACAATATTAAGAAAAAGCATTAAGTACTGTAGCAAATATGGCAAACAAGTTACATGCTTAAGAACAGAATTTGCACTTTCTGAATTGTATTATAGGTGAGTGATTTTGATTAAGTTGAACATTTCGTCACATTAGATATCAATAGGGGAAATGCATTAAACTGGGAGCAACAATACAACATCATTCTTGGAATTGCCAAGGGAATATTGTATCTACACGAGGACTCGAGCTTGAGGATCATTCACCGGGACCTAAAATCGAACAACATTTTACTTGGTGAGGATATGGAACCGAAAATTGCAGATTTTGGATTGGCAAGGCTGCTAGGAGAAGGCCATACTCATACTAGGACGACTAGAGTTGTTGGAACATTGTAAGTTCATCTGCATAATAAAACCTTCACTCACGACTAATCACACATATATTGATCAATGTATGTTTCCAAGCCTAATGCTGATAACTTCTGCAGCGGTTATATGGCACCCGAGTATGCAATAGATGGAAATGTGTCAACCAAGATCGATATTTTTAGCTTTGGTGTGTTGGTCCTCGAAATAGTAACGAGGAGAAGGAACTGCAATTCTGATGATCATGATCTTGTGAATCTCCTTAGTGATGTAAGTGCTGAGTAATGCTGACATACCTTACTCCAGTATATATGCTTCCATTTTTATTGCATTTGCATACTGAAACTAGTCATGATTTCAAATCTGAAAGTACTCTCAAACAAGTTTCCGATTAACAAACTCATGTCAATCCGTCTAACAGGTCTGGAATTGCTGGACAAAAGGGACGGTTTCCCAAATGATTGACCAATCGCTTCACGGATATTCTCAAAGCCAAGCACTGCGATGCATCCACATTGCGCTGTTGTGCGTCCAGTCAGACCCTAACGATAGACCTCAGATATCATCTGTCATTTTCATGTTGACCCGAGAAAACATGGAGCTTCAGCCACCAGCACAACCTGCATTCTTCTTTGGGGGAGGATCAGCTTCCTCTTCTCCTTCATTTGGGCAACGCAGCTATGTGTATGACCGATGTGGTTTTGATAACATTTCTGTAAACGGTGTTACACTCACTGAGCCATATCCTAGATGACTAGTATGTCATACTAGGGCACATTTTTAATGGGTAATAAATCATGGAACCTTACCATGTCCATGCAATGATGCAAT
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| CDS seq | ATGCTCGCCGGCTATGTCTACGGTGGTGGCATCCTCGCCGTCGTTCTCGCCGTCGTCGTCGTCACGCTGCCGCTGCCGGCCACGGCGGCTCCGGTCGCTGAATGCGACCCCGGTGTCGCCAACACGAACGTGACCGGCAACAGCGCTTTCGACAGGAACCTGGGCCTCCTCGCCGCGGCGCTCGCCGCCAACGCCTCTGCCGCCGGCGCCCCGGGCTTCGCCGTCCGCACCGCCGGCGCGGCGCCCGACCAGGTCTACGCGCTGGCGCTCTGCCGCGGCGACGTGAACGCCTCGGCTTGCCGCGCGTGCGTCGCGGCGGCGTTCGTCGACGCGAAGGGCGTCTGCCCCGGCGGCATCTCCCTGTACGAGGACGCCTGCTTGATCCGCTTCACCGGCCAGAGCTTCATGGATTTCCTCAGGCCGGACAAGTGGCAGGTCTCCCAGATGACTTGGATTCCCGGCCAAGCCTCGGGGAACGTCAAGGTGCCGGAGGTCGGCTGGTTCAACGCCGCCGTGGCAAAGATCCTCGCCGCCCTGGTCGAGCACGCCTGGGCCACGACGACGACGACGACGACGGGCAACAACTCGACCACCACCATCAAGTATTTCGCCACGGGTGAGGAGAGCTTCAACCCCAAGATCTACGGGTTCGCGCAGTGCGTGCCGGTCCTGACGCCGGAGCAGTGCAAGGAATGCCTTAGGAGCCTCCACGATAATGCGAAAACGGTGTACATGGGCAACAGCCTCCGGTGGGTTGGTATCTATTCGGTGTGGTGCAGGCTGATGTATAGCGTGCGGCCGTTCTACGGAGGCCGGGCGACGCTGCAGCTCTCGCCGCCGCCACCACCGGTCGTCGAGACTCCGGTTGAGGCTGGAGCAGGGAAGAAAAAGAGTGCAGCAGGAGTCGCTGCAGGCCTGGCTTGTTCAGTTTTGGTACTGTTGATCCTTGCAGTTTTTGCATTCGTTCGGTTCAAGAGGAGGACCAAGGCTGTCGAGGCTGACCACCCATTGAAGAAGATAACAAGAGCACAATGCATGATTTTTGATCTGCCTACGCTGCAAGAGGCAACTGAGAACTTCTCGGAGAACAATAAACTGGGAGAAGGTGGTTTTGGTTCAGTATACAAGGGAGTACTCTCAGATGGACAAGAAGTAGCAGTCAAGAAACTTTTAGGAACAAGTGGGCATGGATTAGATCAGCTACACAATGAGGTTCTGTTATTGGCAGAGCTTCAGCATAAGAACCTTGTTCGGCTACATGGATTTTGCTTGCATCAGGGGGAGACATTACTGGTTTATGAATACATCAAGAACGGGAGCCTGGACAACTTCCTATTCGATATCAATAGGGGAAATGCATTAAACTGGGAGCAACAATACAACATCATTCTTGGAATTGCCAAGGGAATATTGTATCTACACGAGGACTCGAGCTTGAGGATCATTCACCGGGACCTAAAATCGAACAACATTTTACTTGGTGAGGATATGGAACCGAAAATTGCAGATTTTGGATTGGCAAGGCTGCTAGGAGAAGGCCATACTCATACTAGGACGACTAGAGTTGTTGGAACATTCGGTTATATGGCACCCGAGTATGCAATAGATGGAAATGTGTCAACCAAGATCGATATTTTTAGCTTTGGTGTGTTGGTCCTCGAAATAGTAACGAGGAGAAGGAACTGCAATTCTGATGATCATGATCTTGTGAATCTCCTTAGTGATGTCTGGAATTGCTGGACAAAAGGGACGGTTTCCCAAATGATTGACCAATCGCTTCACGGATATTCTCAAAGCCAAGCACTGCGATGCATCCACATTGCGCTGTTGTGCGTCCAGTCAGACCCTAACGATAGACCTCAGATATCATCTGTCATTTTCATGTTGACCCGAGAAAACATGGAGCTTCAGCCACCAGCACAACCTGCATTCTTCTTTGGGGGAGGATCAGCTTCCTCTTCTCCTTCATTTGGGCAACGCAGCTATGTGTATGACCGATGTGGTTTTGATAACATTTCTGTAAACGGTGTTACACTCACTGAGCCATATCCTAGATGA
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| Protein seq | MLAGYVYGGGILAVVLAVVVVTLPLPATAAPVAECDPGVANTNVTGNSAFDRNLGLLAAALAANASAAGAPGFAVRTAGAAPDQVYALALCRGDVNASACRACVAAAFVDAKGVCPGGISLYEDACLIRFTGQSFMDFLRPDKWQVSQMTWIPGQASGNVKVPEVGWFNAAVAKILAALVEHAWATTTTTTTGNNSTTTIKYFATGEESFNPKIYGFAQCVPVLTPEQCKECLRSLHDNAKTVYMGNSLRWVGIYSVWCRLMYSVRPFYGGRATLQLSPPPPPVVETPVEAGAGKKKSAAGVAAGLACSVLVLLILAVFAFVRFKRRTKAVEADHPLKKITRAQCMIFDLPTLQEATENFSENNKLGEGGFGSVYKGVLSDGQEVAVKKLLGTSGHGLDQLHNEVLLLAELQHKNLVRLHGFCLHQGETLLVYEYIKNGSLDNFLFDINRGNALNWEQQYNIILGIAKGILYLHEDSSLRIIHRDLKSNNILLGEDMEPKIADFGLARLLGEGHTHTRTTRVVGTFGYMAPEYAIDGNVSTKIDIFSFGVLVLEIVTRRRNCNSDDHDLVNLLSDVWNCWTKGTVSQMIDQSLHGYSQSQALRCIHIALLCVQSDPNDRPQISSVIFMLTRENMELQPPAQPAFFFGGGSASSSPSFGQRSYVYDRCGFDNISVNGVTLTEPYPR |
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| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0539700 | OsNip_07t0539700-01 | Chr07 | 21265863 | 21269388 | + | RAP2018-11-26 | ||
| CDS seq | ATGCTCGCCGGCTATGTCTACGGTGGTGGCATCCTCGCCGTCGTTCTCGCCGTCGTCGTCGTCACGCTGCCGCTGCCGGCCACGGCGGCTCCGGTCGCTGAATGCGACCCCGGTGTCGCCAACACGAACGTGACCGGCAACAGCGCTTTCGACAGGAACCTGGGCCTCCTCGCCGCGGCGCTCGCCGCCAACGCCTCTGCCGCCGGCGCCCCGGGCTTCGCCGTCCGCACCGCCGGCGCGGCGCCCGACCAGGTCTACGCGCTGGCGCTCTGCCGCGGCGACGTGAACGCCTCGGCTTGCCGCGCGTGCGTCGCGGCGGCGTTCGTCGACGCGAAGGGCGTCTGCCCCGGCGGCATCTCCCTGTACGAGGACGCCTGCTTGATCCGCTTCACCGGCCAGAGCTTCATGGATTTCCTCAGGCCGGACAAGTGGCAGGTCTCCCAGATGACTTGGATTCCCGGCCAAGCCTCGGGGAACGTCAAGGTGCCGGAGGTCGGCTGGTTCAACGCCGCCGTGGCAAAGATCCTCGCCGCCCTGGTCGAGCACGCCTGGGCCACGACGACGACGACGACGACGGGCAACAACTCGACCACCACCATCAAGTATTTCGCCACGGGTGAGGAGAGCTTCAACCCCAAGATCTACGGGTTCGCGCAGTGCGTGCCGGTCCTGACGCCGGAGCAGTGCAAGGAATGCCTTAGGAGCCTCCACGATAATGCGAAAACGGTGTACATGGGCAACAGCCTCCGGTGGGTTGGTATCTATTCGGTGTGGTGCAGGCTGATGTATAGCGTGCGGCCGTTCTACGGAGGCCGGGCGACGCTGCAGCTCTCGCCGCCGCCACCACCGGTCGTCGAGACTCCGGTTGAGGCTGGAGCAGGGAAGAAAAAGAGTGCAGCAGGAGTCGCTGCAGGCCTGGCTTGTTCAGTTTTGGTACTGTTGATCCTTGCAGTTTTTGCATTCGTTCGGTTCAAGAGGAGGACCAAGGCTGTCGAGGCTGACCACCCATTGAAGAAGATAACAAGAGCACAATGCATGATTTTTGATCTGCCTACGCTGCAAGAGGCAACTGAGAACTTCTCGGAGAACAATAAACTGGGAGAAGGTGGTTTTGGTTCAGTATACAAGGGAGTACTCTCAGATGGACAAGAAGTAGCAGTCAAGAAACTTTTAGGAACAAGTGGGCATGGATTAGATCAGCTACACAATGAGGTTCTGTTATTGGCAGAGCTTCAGCATAAGAACCTTGTTCGGCTACATGGATTTTGCTTGCATCAGGGGGAGACATTACTGGTTTATGAATACATCAAGAACGGGAGCCTGGACAACTTCCTATTCGATATCAATAGGGGAAATGCATTAAACTGGGAGCAACAATACAACATCATTCTTGGAATTGCCAAGGGAATATTGTATCTACACGAGGACTCGAGCTTGAGGATCATTCACCGGGACCTAAAATCGAACAACATTTTACTTGGTGAGGATATGGAACCGAAAATTGCAGATTTTGGATTGGCAAGGCTGCTAGGAGAAGGCCATACTCATACTAGGACGACTAGAGTTGTTGGAACATTCGGTTATATGGCACCCGAGTATGCAATAGATGGAAATGTGTCAACCAAGATCGATATTTTTAGCTTTGGTGTGTTGGTCCTCGAAATAGTAACGAGGAGAAGGAACTGCAATTCTGATGATCATGATCTTGTGAATCTCCTTAGTGATGTCTGGAATTGCTGGACAAAAGGGACGGTTTCCCAAATGATTGACCAATCGCTTCACGGATATTCTCAAAGCCAAGCACTGCGATGCATCCACATTGCGCTGTTGTGCGTCCAGTCAGACCCTAACGATAGACCTCAGATATCATCTGTCATTTTCATGTTGACCCGAGAAAACATGGAGCTTCAGCCACCAGCACAACCTGCATTCTTCTTTGGGGGAGGATCAGCTTCCTCTTCTCCTTCATTTGGGCAACGCAGCTATGTGTATGACCGATGTGGTTTTGATAACATTTCTGTAAACGGTGTTACACTCACTGAGCCATATCCTAGATGA
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| Protein seq | MLAGYVYGGGILAVVLAVVVVTLPLPATAAPVAECDPGVANTNVTGNSAFDRNLGLLAAALAANASAAGAPGFAVRTAGAAPDQVYALALCRGDVNASACRACVAAAFVDAKGVCPGGISLYEDACLIRFTGQSFMDFLRPDKWQVSQMTWIPGQASGNVKVPEVGWFNAAVAKILAALVEHAWATTTTTTTGNNSTTTIKYFATGEESFNPKIYGFAQCVPVLTPEQCKECLRSLHDNAKTVYMGNSLRWVGIYSVWCRLMYSVRPFYGGRATLQLSPPPPPVVETPVEAGAGKKKSAAGVAAGLACSVLVLLILAVFAFVRFKRRTKAVEADHPLKKITRAQCMIFDLPTLQEATENFSENNKLGEGGFGSVYKGVLSDGQEVAVKKLLGTSGHGLDQLHNEVLLLAELQHKNLVRLHGFCLHQGETLLVYEYIKNGSLDNFLFDINRGNALNWEQQYNIILGIAKGILYLHEDSSLRIIHRDLKSNNILLGEDMEPKIADFGLARLLGEGHTHTRTTRVVGTFGYMAPEYAIDGNVSTKIDIFSFGVLVLEIVTRRRNCNSDDHDLVNLLSDVWNCWTKGTVSQMIDQSLHGYSQSQALRCIHIALLCVQSDPNDRPQISSVIFMLTRENMELQPPAQPAFFFGGGSASSSPSFGQRSYVYDRCGFDNISVNGVTLTEPYPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.807035 | 0.323168 | 0.385955 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0537300 | SBH | 0.107789 | 0.445112 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35540 | RBH | 1.204829 | 0.214301 | 0.097955 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0539700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018120 | RBH | 0.919784 | 2.928725 | 0.424692 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018050 | RBH | 0.114372 | 0.0 | 0.863869 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018030 | RBH | 0.390673 | 1.121582 | 1.139391 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017920 | RBH | 0.109377 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018050 | RBH | 0.347667 | 1.252696 | 2.195870 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0346800 | RBH | 2.1183005 | 30.0820495 | 0.4533895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018550 | RBH | 0.121958 | 0.328451 | 0.116357 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0358400 | SBH | 1.1841445 | 13.820534 | 1.580925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017810 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017960 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017720 | SBH | 0.0 | 3.643550 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018020 | SBH | 0.0 | 0.238302 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017910 | RBH | 0.120184 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017860 | RBH | 0.0 | 0.441035 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017850 | RBH | 0.220737 | 9.852653 | 0.499125 |
