Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0537300 | OGI:07058990 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:21121289-21125139 | ||||||||
| Gene Symbol | AGP, OsAGP | ||||||||||
| DNA seq | ACCCACAGGTGACGAGTGACGACGGGTCTCCGCGGTCATGGCGCGCCACCGCGTACGCTGCCTCCTCGCCGCCGCGCTCCTCCTCGTCGCGCCGATGGCGGCGGCCCAGCCGTGGCAGTTCTGCGGGCAGAGCGGCAACTTCTCGGCGAACAGCGCGTACCAGTCCAACCTCCGCCAGCTCTCCGCCACCCTCCCCAAGAACGCCTCCGCCGCCCTCTTCGCGGCCGGTAGCCTCGGCACCGTCCCGGACATCGTCTACGCGCTCGCGCTCTGCCGCGGCGACGCCAACGCCTCCGCCTGCGAGTCCTGCGTCGACAACGCCTTCCAGGGGGGCCAGCAGCTGTGCCCCTACAACAAGGACGTGTTCATCGTCTACGACCTCTGCTACCTCCGCTTCACCAACCGCAACCTCCTCGCCTCCGCCACGGACAACGGGAGCCCCATGATGCTCATGAACGCGCAGAACGCGAGCGCGACGGCGGAGGTGTTCGACGCCGCCGCCGCCACCCTCCTCAACGCCACCAGCGGCTACGCGGCGGCGAACTCGTCCAGGCGGTTCGCCACGGGGGAGGAGGCCTTCGATGCCGCCGACCCCACCATCTACGGGCTGTCCCAGTGCACGCCGGACATGTCGCCGGACGACTGCCGGAGCTGCCTCGGGGGCATAATCGCGTTGATACCTCAGTACTTCGGCCGGAAGAGGGGCGCGAGGGTTATCGGGACGCGCTGCAACTACAGGTACGAGGTGTATCCTTTCTTCGCCGGAGGCTCGATGCTGCGGCTCCCGGCGCCGGCGGCGCCGGCGGCGCCTCCGCCTGCACCTGGACCAGCAAACATGACCCCACCGGCGCACACCGGAGGTGAGTTGCAGATTTGCGGTCAAAAATCAGTTTCGTTTGGAGTAAATTTATAGCACTCCCTCCATTTTTCAAATTACTTGTCGTTTTACCTTTGTTGTTAGTCAAAAATTTGTATATTTAAGCATCGATGTGTAGAAAATCATATAGTTTAACATCACACTATTTATGTTTTTAAGATTTACCATGAGAAATACTTTCATAATATATATAATTCACATGTTAAATTATATGAATTTCTAAAAGTTAATGGTGAAAGATAAATGTTTAACTTAAAATAAAGCTAGAACGATGAGTAATTTAAAACAGATGGGGTGTTGGTATTTAGCACAATAACAACTCCTCATAATTAGTTTTCCATCAATTTTGAGAAAACTAGGAAAAAAAATTTACCGAAGATACCAATATAGTAGTAGTTTTGAGTAGAGAAAGAGAGAAACTTACAATCAGTTCGAAGAAAAAGGAAGAAAGAACCCCTAAACTAATTTGCATGTCTTTAAATTGTTTTGTGCTGTCTAGGTTAGAAATGCTACTGCGTTAAGAATTGTGGCTGCTCTGCAGTAGGGCTGAATTGCAAATTTTTTAGGTAAAGACAAAAATGTCTTTATCAGGGAAATTGGTTGCATGGGGATTACTGAACATTGGTCAGAGAAATCTGGTTGCTATGACATATTAATATAGATAACCCTGTGCTCTTTTTGCCCTTTTTTGGATAGATCTGACATTTCTGTTGTCCTGTTTCTTCACACATTTATTCCATGTAGAATTGGTAATAACTGCATTTCCATTATGCAATATATATGTGCCTTAAACATGTAAAGTTCAACAACGATTTTGGTTTCCTCCATGTATTGCCATTTAAGTAGGAAAAAACATGAGAAGATGAAACCATATTCTAAAATGCCATTTTTTTACAGTGAAGAAAGCCCTGTATAATATATTGAAAAGTTTGCGATGTGCTGTACAGGTCAAAAACTGAAAAGTGTTGAACTGTAGCATGTACCTTTTTGAACAGAAACTTAATTATAGTGGAAATGTATCATCATATTTAGGTTATGAATTAGTCTCGTTAAGTTCATATCTGTCTGAAATTGAAATCACTTGCTTGCAGAAAGAAAGAAAAATAAAAGTGGAACAGCTCTAGCCATTGCACTGCCCCTAGTTGTTGTATTGCTGGCTATGGTTGCCATTTGTTTTTCTGTTCAGAGGCGGAGAAAAAGATCAAGGTCAAAACAGCAACATTCATGTAAGTTCAGTAACAATTTTGATTATTATTATAGGGAAATAGTGATTCCCTTTGACAATTCGAATTTTATTCTTCCCTACAATTTTTAGTTGGAAATGACGTCACATTTATTTCAGTTACATCGCATCAAAATTTTGTTGCCCTCTTTTGATAGATTCAATGCAAATGGGGGAGGACATTGAAAGCGTAGATTCACTTTTTATCGATCTATCAACGCTGCGTGCTGCGACAGGTAACTTTTCCGAGACAAATAGGCTTGGTGAAGGAGGATTTGGTTCGGTTTATAAGGTACAATCATATATATCTCTCACTTCATGTAATTATGTTCGCGTTCTGCTTCAATAAGTGAGTGCCTACACTTATATGCAGGGTGTCCTTCCTAATGGTGAAGAGATAGCTGTAAAGAGGCTCTCTATGAGTTCAGGACAAGGAATAGAAGAGCTAAAGAATGAGCTTGTTTTGGTCGCCAAACTTCAGCACAAGAATCTTGTTAGGCTTGTTGGTGTTTGCTTGCAAGAACATGAGAAATTGCTTGTGTATGAATACATGCCCAATAGAAGTATCGACACCATTCTATTTGGTACTATTCTCTACTCAGAATTCAACAAATTACTGGTAAAACTGTGGTTTACTAATGGTATTTCTTGTTCAACTGGCAGATCTTGACAAAAGGAGGGAACTAGACTGGGGAAAAAGATTTAGGATAATAAACGGAATTGCTCGAGGATTACAATATCTTCAAGAAGATTCTCAGCTGAGAATAATTCACCGGGACCTCAAAGCAAGCAATGTTCTATTGGACTCCGACTATACTCCTAAGATTTCGGATTTTGGTTTGGCAAGGCTATTTGGGGGTGATCAAACAAGGGAGATCACACGCCATGTTGTCGGAACGTAGTAAGTATTGTCCATATTAACCCAATCAGATACAAATATAGTATGTCAGCATGAGTAATTTTATTCTCTTACTGCAGCGGATATATGGCGCCAGAATATGCGATGCGTGGGCACTATTCTGTAAAGTCAGATGTCTTTAGCTTTGGCATATTGATGATAGAAATTGTGACAGGAAGGAGAAGCAGTGGTTCACTCAGCTTTGATCAATCAAACGATCTCCTAAGTCTTGTGAGTCCTTGCTCATTTCCTGGACTCTTCTACAAATTTAAGTAGCTTACTTCTTCTTGCAAAAATCTGAATCATCTTTGCCAATATGAATATATGATGCAGGTATGGGAGCACTGGACCATGGGAACAATTTTGGAGATGATGGATCCCTCTCTTACAAGCCATGCTCCTCGAGACCAGATGCTCAAGTGTATTCACATTGGGCTACTGTGTGTTCAAGATAACCCAGCAGATAGACCTATGATGTCAACAGTGAATGTCATGCTTAGCAGCAGCACAGTGTCTCTTCAATCTCCATCCAAGCCATCATTTTTCATTCCCAAAAGTGACACAGACTCAAATATATACTCGGAATCACACCCACTAACTTCCCAATCGACTGCCTCGACCGGTAGGTCGGGAGGGATGTCAGTTAATGATGTGTCAATTACAGAGCTTGAACCAAGATAAGGAAACCAAATCCTTCGAATTTAAGATAAGAAAATCAGTGACAACGGTAATTGAATTGTTACTTTTAAGAAACAAACTTCAGGGAGAAGGCCATAAACTTGTAGGAGAAGCATTGAATTCTGAGTGCATTTCTCCATTGGCTGAGTCAATATTTTGGTTGGTTTTGTTTGTTC
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| CDS seq | ATGGCGCGCCACCGCGTACGCTGCCTCCTCGCCGCCGCGCTCCTCCTCGTCGCGCCGATGGCGGCGGCCCAGCCGTGGCAGTTCTGCGGGCAGAGCGGCAACTTCTCGGCGAACAGCGCGTACCAGTCCAACCTCCGCCAGCTCTCCGCCACCCTCCCCAAGAACGCCTCCGCCGCCCTCTTCGCGGCCGGTAGCCTCGGCACCGTCCCGGACATCGTCTACGCGCTCGCGCTCTGCCGCGGCGACGCCAACGCCTCCGCCTGCGAGTCCTGCGTCGACAACGCCTTCCAGGGGGGCCAGCAGCTGTGCCCCTACAACAAGGACGTGTTCATCGTCTACGACCTCTGCTACCTCCGCTTCACCAACCGCAACCTCCTCGCCTCCGCCACGGACAACGGGAGCCCCATGATGCTCATGAACGCGCAGAACGCGAGCGCGACGGCGGAGGTGTTCGACGCCGCCGCCGCCACCCTCCTCAACGCCACCAGCGGCTACGCGGCGGCGAACTCGTCCAGGCGGTTCGCCACGGGGGAGGAGGCCTTCGATGCCGCCGACCCCACCATCTACGGGCTGTCCCAGTGCACGCCGGACATGTCGCCGGACGACTGCCGGAGCTGCCTCGGGGGCATAATCGCGTTGATACCTCAGTACTTCGGCCGGAAGAGGGGCGCGAGGGTTATCGGGACGCGCTGCAACTACAGGTACGAGGTGTATCCTTTCTTCGCCGGAGGCTCGATGCTGCGGCTCCCGGCGCCGGCGGCGCCTCCGCCTGCACCTGGACCAGCAAACATGACCCCACCGGCGCACACCGGAGGTGAGTTGCAGATTTGCGGTCAAAAATCAGTTTCGTTTGGAGTAAATTTATAG
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| Protein seq | MARHRVRCLLAAALLLVAPMAAAQPWQFCGQSGNFSANSAYQSNLRQLSATLPKNASAALFAAGSLGTVPDIVYALALCRGDANASACESCVDNAFQGGQQLCPYNKDVFIVYDLCYLRFTNRNLLASATDNGSPMMLMNAQNASATAEVFDAAAATLLNATSGYAAANSSRRFATGEEAFDAADPTIYGLSQCTPDMSPDDCRSCLGGIIALIPQYFGRKRGARVIGTRCNYRYEVYPFFAGGSMLRLPAPAAPPPAPGPANMTPPAHTGGELQICGQKSVSFGVNL |
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| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0537300 | OsNip_07t0537300-00 | Chr07 | 21121304 | 21122602 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGCGCCACCGCGTACGCTGCCTCCTCGCCGCCGCGCTCCTCCTCGTCGCGCCGATGGCGGCGGCCCAGCCGTGGCAGTTCTGCGGGCAGAGCGGCAACTTCTCGGCGAACAGCGCGTACCAGTCCAACCTCCGCCAGCTCTCCGCCACCCTCCCCAAGAACGCCTCCGCCGCCCTCTTCGCGGCCGGTAGCCTCGGCACCGTCCCGGACATCGTCTACGCGCTCGCGCTCTGCCGCGGCGACGCCAACGCCTCCGCCTGCGAGTCCTGCGTCGACAACGCCTTCCAGGGGGGCCAGCAGCTGTGCCCCTACAACAAGGACGTGTTCATCGTCTACGACCTCTGCTACCTCCGCTTCACCAACCGCAACCTCCTCGCCTCCGCCACGGACAACGGGAGCCCCATGATGCTCATGAACGCGCAGAACGCGAGCGCGACGGCGGAGGTGTTCGACGCCGCCGCCGCCACCCTCCTCAACGCCACCAGCGGCTACGCGGCGGCGAACTCGTCCAGGCGGTTCGCCACGGGGGAGGAGGCCTTCGATGCCGCCGACCCCACCATCTACGGGCTGTCCCAGTGCACGCCGGACATGTCGCCGGACGACTGCCGGAGCTGCCTCGGGGGCATAATCGCGTTGATACCTCAGTACTTCGGCCGGAAGAGGGGCGCGAGGGTTATCGGGACGCGCTGCAACTACAGGTACGAGGTGTATCCTTTCTTCGCCGGAGGCTCGATGCTGCGGCTCCCGGCGCCGGCGGCGCCTCCGCCTGCACCTGGACCAGCAAACATGACCCCACCGGCGCACACCGGAGGTGAGTTGCAGATTTGCGGTCAAAAATCAGTTTCGTTTGGAGTAAATTTATAG
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| Protein seq | MARHRVRCLLAAALLLVAPMAAAQPWQFCGQSGNFSANSAYQSNLRQLSATLPKNASAALFAAGSLGTVPDIVYALALCRGDANASACESCVDNAFQGGQQLCPYNKDVFIVYDLCYLRFTNRNLLASATDNGSPMMLMNAQNASATAEVFDAAAATLLNATSGYAAANSSRRFATGEEAFDAADPTIYGLSQCTPDMSPDDCRSCLGGIIALIPQYFGRKRGARVIGTRCNYRYEVYPFFAGGSMLRLPAPAAPPPAPGPANMTPPAHTGGELQICGQKSVSFGVNL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0537300 | OsNip_07t0537300-01 | Chr07 | 21121289 | 21125139 | + | IsoSeq | ||
| CDS seq | CCACAGGTGACGAGTGACGACGGGTCTCCGCGGTCATGGCGCGCCACCGCGTACGCTGCCTCCTCGCCGCCGCGCTCCTCCTCGTCGCGCCGATGGCGGCGGCCCAGCCGTGGCAGTTCTGCGGGCAGAGCGGCAACTTCTCGGCGAACAGCGCGTACCAGTCCAACCTCCGCCAGCTCTCCGCCACCCTCCCCAAGAACGCCTCCGCCGCCCTCTTCGCGGCCGGTAGCCTCGGCACCGTCCCGGACATCGTCTACGCGCTCGCGCTCTGCCGCGGCGACGCCAACGCCTCCGCCTGCGAGTCCTGCGTCGACAACGCCTTCCAGGGGGGCCAGCAGCTGTGCCCCTACAACAAGGACGTGTTCATCGTCTACGACCTCTGCTACCTCCGCTTCACCAACCGCAACCTCCTCGCCTCCGCCACGGACAACGGGAGCC
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| Protein seq | PQVTSDDGSPRSWRATAYAASSPPRSSSSRRWRRPSRGSSAGRAATSRRTARTSPTSASSPPPSPRTPPPPSSRPVASAPSRTSSTRSRSAAATPTPPPASPASTTPSRGASSCAPTTRTCSSSTTSATSASPTATSSPPPRTTGA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.107789 | 0.445112 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0537000 | SBH | 1.724079 | 1.268597 | 1.709922 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35290 | RBH | 0.068280 | 0.490753 | 0.116840 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0537300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017990 | SBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017870 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017860 | SBH | 0.103705 | 1.116436 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017780 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017880 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0343800 | SBH | 0.286414 | 7.1279885 | 0.537814 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018370 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0358400 | SBH | 1.1841445 | 13.820534 | 1.580925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017620 | SBH | 0.020201 | 0.093346 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017780 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017720 | SBH | 0.0 | 3.643550 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018000 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017790 | SBH | 0.0 | 1.885295 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017760 | SBH | 1.442547 | 0.0 | 0.836613 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017630 | SBH | 0.466285 | 10.423672 | 0.741305 |
