Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0018000 | OGI:07058990 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:20944859-20948628 | ||||||||
| Gene Symbol | AGP, OsAGP, RLCK237, OsRLCK237 | ||||||||||
| DNA seq | atggccacctttgcgcgccaccgcgtcctcctcctctgccgcctcgccgcggcgctcctcctcgcgccggtggcggcggcccagccgtggcagttctgcgggcagggcggcaactactcggcgaacggcacctaccagtccaacctcgccgggctctccgccaccctccccaagaacgcctccgcgtcccggacgctcttcgccaaggacagcctcggcgccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacgtcgccaacgccaccgcctgcgagtcctgcgtcgccacggcgttccaggacgcgcagcagctgtgcccctacgacaaggacgcgttcatcgtctacgacctctgctacctcgccttctccaacaggaacatcctcgccgccgccgccgacgacgacgggagccccaggttcctgatgaacacgcagaacgcgagcgcgccggcggaggtgttcgacgccgccgtcgccaccctcctcaacgccaccagcagctacgccgcggagaactcgtccaggcggttcgccacgggggaggaggccttcgatgccgccgctactccgaccatctacgggctgtcccagtgcacgccggacatgtcgccggacgactgccggagctgcctcgggcgcataatcgcgctgatccctcggtacctcagccggaggaagggcgggagggctatcgggatgcgctgcaatttcaggtacgaggtgggtcctttcttcgccggaggctcgatgctgcggctcccggcgccggcgaactcgacgccgacggcgccaaccggaggtgtgttgcagacaaaggggatccacttcttttgcagtaatttatcttggtatttaattagcgcgacaacatctgctcataattaattttccatcaattttgacaaaatgaagacaaccaaacgactattgaagaagaaaactctaaacaaacttgtactatgtgtttaaattgtttctgctgtttaggtaaaaaatgttaccgcgttaagaattgtggtttgctttgcagtactgttgaattgcaaaaataacaaaaaaaaatgtggggaaatataaaaatatctcaatcatggcaactggttgcatggggattactggtcaaagcagcctggtacgctggtagctatcacatattataaccctgtacacttttcttccttttttgggttgatcttgacatttctttagtcctgtttctatcggattcttgaccagaaatggcgaaaagcacgtcttactcaacatttccaactgcaatgcatttatttaccaataaataatactagtatgatgttttcaggaatacttttagaagtacttttccttatcacttgatcacgtctccttcactttccataaatttccccacaatctttcatatttttatttgtattcaattatcctggttgtctactttgccgagatttgtggataccaccagtaataataaaaagaattgtagatctgatcactccagcgccagagctaggtgaatatggtttcatcttctcgtgtcttttccaattgagcctgattacttggtcagttcacacatttattccaatgtagtgttggtaattaactgcacttccattatgcaacttgtatgtatgtgctttacatgtaaagttcaacaatgattttggtttcctccatgttttcccgtttaattaggaaaagacacgagaagatgaaaccatattctaaaataccttttttaacagtcaaaatagtcctttataatatattgaaaagtgcttgactttattagctttgcggtgtgctgtataggtcaaagtgttgacctgcactaaataagtttctggtgtgacttcgtagcatgtacctttttgaacagaaactttaattatagtggatatgtgtcatcatatttaggttatgaattagtcttgttaagttctatacttctatatgtctgtcttcgcaacaaaaacaagttttatctgtctgaagctgaaatcacttgcctgcaggaagaaagaaaaataaaagtggcacagctctagccattgcactgcccctagttgttatattgttggctacggttgccatttgtctttctgttcagtggtggagaagaagatcaaggtcaaaacagcaaccttcaagtaagttcaccaacaattttgattatagttagagggaaacagtgattccctttgattatctgaatatttttattccctagaaatgaaaaagggtttcatagttggaaatgacgtcatatttcaggaaaacttaatatttcagttaaatcgcatcataatgtgttgttgcccttttttgatagattcaattcaaatggctgaggacattgaaaacacggattcactttttatcgatctatcaacactgcgtgctgcaacgggtaacttttctgagagcaataggattggtgaaggaggatttggttcagtttataaggtaccaatcatatatcattcactttattttagtgcataactatgaacatgctctgcttcagtaagtgagtgcttgcacttatgcagggcgtccttcctagtggtgaagagatagctgtaaagaggctctctatgagttcaagacaaggaatagaagagctaaaaaatgagcttgttttggttgccaaacttcagcagaagaatcttgttaggcttgttggtgtctgcttgcaagaacatgagaaattgcttgtgtatgaatacatgcccaatagaagtatcgacaccattctatttggtactattttctactcagaattcaacaattgcacaagcactactagatctgaactgtacatttccttgccaaaatgtgtttctttaccccccccccccaccttcttgaatcaggtcttcaacccaagccaaacacttggaattcacatgcacttgtcatcatgaatatatcttagtggtaaaactgtggtttactaagacatttcttgttcaattgacagatcttgagaaaaggaaggagttagactggggaaaaagatttaggataataaatggaattgctcgcgcattacagtatcttcatgaagattctcaactgagaataattcaccgagacctcaaagcaagcaatgttctattagactccgattatacccctaagatttcagattttggcttggcaagactatttgggggtgatcaaacaagggaagtcacgagccgtgtagtaggaacatagtaagtattgtctaaactaacccaatcagatacaaatagtatgctggcatgagtaactttattctcttactgcagcggatatatggcaccagaatatgcgatgcgtggccactattctgtaaagtcagacgtctttagctttggcatattgatgatagaaattgtgacaggaagaagaagcagtggttcatatagctttgatcaatcatatgatctcctaagccgtgttagtcctttttcctggactattctacaaagctaatcagaatgatctcctaacttgttacaaaaattctgaatcatctttgccaatatgatgcaggtatgggagcactggaccatgggaacaattttggagatgatggatccctctcttacaagccatgctcctcgagaccagatgctcaagtgtattcacattgggctactgtgtgttcaagataacccagcagatcgacctatgatgtcaacagtgaatatcatgcttagcagcaacacagtgtctcttcaatccccatccaaaccatcattttt
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| CDS seq | atggccacctttgcgcgccaccgcgtcctcctcctctgccgcctcgccgcggcgctcctcctcgcgccggtggcggcggcccagccgtggcagttctgcgggcagggcggcaactactcggcgaacggcacctaccagtccaacctcgccgggctctccgccaccctccccaagaacgcctccgcgtcccggacgctcttcgccaaggacagcctcggcgccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacgtcgccaacgccaccgcctgcgagtcctgcgtcgccacggcgttccaggacgcgcagcagctgtgcccctacgacaaggacgcgttcatcgtctacgacctctgctacctcgccttctccaacaggaacatcctcgccgccgccgccgacgacgacgggagccccaggttcctgatgaacacgcagaacgcgagcgcgccggcggaggtgttcgacgccgccgtcgccaccctcctcaacgccaccagcagctacgccgcggagaactcgtccaggcggttcgccacgggggaggaggccttcgatgccgccgctactccgaccatctacgggctgtcccagtgcacgccggacatgtcgccggacgactgccggagctgcctcgggcgcataatcgcgctgatccctcggtacctcagccggaggaagggcgggagggctatcgggatgcgctgcaatttcaggtacgaggtgggtcctttcttcgccggaggctcgatgctgcggctcccggcgccggcgaactcgacgccgacggcgccaaccggaggaagaaagaaaaataaaagtggcacagctctagccattgcactgcccctagttgttatattgttggctacggttgccatttgtctttctgttcagtggtggagaagaagatcaaggtcaaaacagcaaccttcaaattcaattcaaatggctgaggacattgaaaacacggattcactttttatcgatctatcaacactgcgtgctgcaacgggtaacttttctgagagcaataggattggtgaaggaggatttggttcagtttataagggcgtccttcctagtggtgaagagatagctgtaaagaggctctctatgagttcaagacaaggaatagaagagctaaaaaatgagcttgttttggttgccaaacttcagcagaagaatcttgttaggcttgttggtgtctgcttgcaagaacatgagaaattgcttgtgtatgaatacatgcccaatagaagtatcgacaccattctatttggtatgggagcactggaccatgggaacaattttggagatgatggatccctctcttacaagccatgctcctcgagaccagatgctcaagtgtattcacattgggctactgtgtgttcaagataa
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| Protein seq | MATFARHRVLLLCRLAAALLLAPVAAAQPWQFCGQGGNYSANGTYQSNLAGLSATLPKNASASRTLFAKDSLGAVPDIVYALALCRGDVANATACESCVATAFQDAQQLCPYDKDAFIVYDLCYLAFSNRNILAAAADDDGSPRFLMNTQNASAPAEVFDAAVATLLNATSSYAAENSSRRFATGEEAFDAAATPTIYGLSQCTPDMSPDDCRSCLGRIIALIPRYLSRRKGGRAIGMRCNFRYEVGPFFAGGSMLRLPAPANSTPTAPTGGRKKNKSGTALAIALPLVVILLATVAICLSVQWWRRRSRSKQQPSNSIQMAEDIENTDSLFIDLSTLRAATGNFSESNRIGEGGFGSVYKGVLPSGEEIAVKRLSMSSRQGIEELKNELVLVAKLQQKNLVRLVGVCLQEHEKLLVYEYMPNRSIDTILFGMGALDHGNNFGDDGSLSYKPCSSRPDAQVYSHWATVCSR |
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| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0018000 | OsLiXu_07g0018000.01 | Chr07 | 20944859 | 20948628 | + | NAM | ||
| CDS seq | atggccacctttgcgcgccaccgcgtcctcctcctctgccgcctcgccgcggcgctcctcctcgcgccggtggcggcggcccagccgtggcagttctgcgggcagggcggcaactactcggcgaacggcacctaccagtccaacctcgccgggctctccgccaccctccccaagaacgcctccgcgtcccggacgctcttcgccaaggacagcctcggcgccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacgtcgccaacgccaccgcctgcgagtcctgcgtcgccacggcgttccaggacgcgcagcagctgtgcccctacgacaaggacgcgttcatcgtctacgacctctgctacctcgccttctccaacaggaacatcctcgccgccgccgccgacgacgacgggagccccaggttcctgatgaacacgcagaacgcgagcgcgccggcggaggtgttcgacgccgccgtcgccaccctcctcaacgccaccagcagctacgccgcggagaactcgtccaggcggttcgccacgggggaggaggccttcgatgccgccgctactccgaccatctacgggctgtcccagtgcacgccggacatgtcgccggacgactgccggagctgcctcgggcgcataatcgcgctgatccctcggtacctcagccggaggaagggcgggagggctatcgggatgcgctgcaatttcaggtacgaggtgggtcctttcttcgccggaggctcgatgctgcggctcccggcgccggcgaactcgacgccgacggcgccaaccggaggaagaaagaaaaataaaagtggcacagctctagccattgcactgcccctagttgttatattgttggctacggttgccatttgtctttctgttcagtggtggagaagaagatcaaggtcaaaacagcaaccttcaaattcaattcaaatggctgaggacattgaaaacacggattcactttttatcgatctatcaacactgcgtgctgcaacgggtaacttttctgagagcaataggattggtgaaggaggatttggttcagtttataagggcgtccttcctagtggtgaagagatagctgtaaagaggctctctatgagttcaagacaaggaatagaagagctaaaaaatgagcttgttttggttgccaaacttcagcagaagaatcttgttaggcttgttggtgtctgcttgcaagaacatgagaaattgcttgtgtatgaatacatgcccaatagaagtatcgacaccattctatttggtatgggagcactggaccatgggaacaattttggagatgatggatccctctcttacaagccatgctcctcgagaccagatgctcaagtgtattcacattgggctactgtgtgttcaagataa
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| Protein seq | MATFARHRVLLLCRLAAALLLAPVAAAQPWQFCGQGGNYSANGTYQSNLAGLSATLPKNASASRTLFAKDSLGAVPDIVYALALCRGDVANATACESCVATAFQDAQQLCPYDKDAFIVYDLCYLAFSNRNILAAAADDDGSPRFLMNTQNASAPAEVFDAAVATLLNATSSYAAENSSRRFATGEEAFDAAATPTIYGLSQCTPDMSPDDCRSCLGRIIALIPRYLSRRKGGRAIGMRCNFRYEVGPFFAGGSMLRLPAPANSTPTAPTGGRKKNKSGTALAIALPLVVILLATVAICLSVQWWRRRSRSKQQPSNSIQMAEDIENTDSLFIDLSTLRAATGNFSESNRIGEGGFGSVYKGVLPSGEEIAVKRLSMSSRQGIEELKNELVLVAKLQQKNLVRLVGVCLQEHEKLLVYEYMPNRSIDTILFGMGALDHGNNFGDDGSLSYKPCSSRPDAQVYSHWATVCSR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0537400 | RBH | 0.000000 | 0.0 | 0.473961 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35300 | RBH | 0.060834 | 0.0 | 0.075297 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0537400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017990 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017870 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017860 | RBH | 0.103705 | 1.116436 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017780 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017880 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0343800 | SBH | 0.286414 | 7.1279885 | 0.537814 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018370 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0358400 | RBH | 1.1841445 | 13.820534 | 1.580925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017620 | RBH | 0.020201 | 0.093346 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017780 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017720 | RBH | 0.0 | 3.643550 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017990 | RBH | 1.133148 | 0.598885 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017790 | SBH | 0.0 | 1.885295 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017760 | SBH | 1.442547 | 0.0 | 0.836613 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017630 | SBH | 0.466285 | 10.423672 | 0.741305 |
