Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsCMeo_07g0018030		OGI:07059420 \| 16/16			CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)			Chr07:20812844-20816385		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		aatgcaacttcaagtgggcgaatttgcaaacattcccgggcgagccggtcatgtttgactccacacttgcgcactcaatccggcatacgtagctatcggcacagcggcgctagctagctaggccatctttagtgcaaaccatggcgccgttcgttaagggtagaaacctctctctccccatctgctgcgccgatgctcgccggctatgtctacggtggtggcatcctcgccgtcgttctcgccgtcgtcgtcgtcacgctgccgctgccggccacggcggctccggtcgctgaatgcgaccccggtgtcgccaacacgaacgtgaccggcaacagcgctttcgacaggaacctgggcctcctcgccgcggcgctcgccgccaacgcctctgccgccggcgccccgggcttcgccgtccgcaccgccggcgcggcgcccgaccaggtctacgcgctggcgctctgccgcggcgacgtgaacgcctcggcttgccgcgcgtgcgtcgcggcggcgttcgtcgacgcgaagggcgtctgccccggcggcatctccctgtacgaggacgcctgcttgatccgcttcaccggccagagcttcatggatttcctcaggccggacaagtggcaggtctcccagatgacgtactgaactattctatatataaatccgaccatttcttcctaaccatatccatggtggaatcagagaaactgatttgctcctcgtcctaaacagttggattcccggccaagcctcggggaacgtcaaggtgccggaggtcggctggttcaacgccgccgtggcaaagatcctcgccgccctggtcgagcacgcctgggccacgacgacgacgacgacgacgggcaacaactcgaccaccaccatcaagtatttcgccacgggtgaggagagcttcaaccccaagatctacgggttcgcgcagtgcgtgccggtcctgacgccggagcagtgcaaggaatgccttaggagcctccacgataatgcgaaaacggtgtacatgggcaacagcctccggtgggttggtatctattcggtgtggtgcaggctgatgtatagcgtgcggccgttctacggaggccgggcgacgctgcagctctcgccgccgccaccaccggtcgtcgagactccggttgaggctggagcaggtatgacccagggttttcaatttcgaaattggttttttttgctggggggaccgaaattttttggccgaaattagttgaaattttgactgttttttaatgaatttgaataaaatttgaccaaattcacaaaaaattgcaaaaaaccgaaaattttgggtgagatgtgagcttgctgggggggcaaaattaccgaaatttcgaaccgtaatttcaaaccctagtatgatgaacaggagcgtgcaatttagttatgttccaacaaataaatatgactcgatcaaggttgtgcgaatataaagagttcatgttttgtttgagcagggaagaaaaagagtgcagcaggagtcgctgcaggcctggcttgttcagttttggtactgttgatccttgcagtttttgcattcgttcggttcaagaggaggaccaaggctgtcgaggctgaccaccgtgagtagcatacagtctctgctcagtttctggaatttgctgttccctgacgtaatttttcttgtcaaatggcaacagcattgaagaagataacaagagcacaatgcatgatttttgatctgcctacgctgcaagaggcaactgagaacttctcggagaacaataaactgggagaaggtggttttggttcagtatacaaggtaagttatatgcatgaaaaatagcttcagatgccattgatcattcggtagaggactatatattgttcattctctgaataataatctgttcagggagtactctcagatggacaagaagtagcagtcaagaaacttttaggaacaagtgggcatggattagatcagctacacaatgaggttctgttattggcagagcttcagcataagaaccttgttcggctacatggattttgcttgcatcagggggagacattactggtttatgaatacatcaagaacgggagcctggacaacttcctattcggtaattttacttcccattcaaacatatcttatttttttacacttcttgaggagataccaaaaggtataatatctttcagtgtagattttggtgcccctaccaataattaaatattaaaaattatggtatcaactgacaactgtacctcctcatggaccatttaatcacacatttctttagagtggagtatctaaatctataacactgcgattagaaatattttacttcagacaaagtatgtggaacaatattaagaaaaagcattaagtactgtagcaaatatggcaaacaagttacatgcttaagaacagaatttgcactttctgaattgtattataggtgagtgattttgattaagttgaacatttcgtcacattagatatcaataggggaaatgcattaaactgggagcaacaatacaacatcattcttggaattgccaagggaatattgtatctacacgaggactcgagcttgaggatcattcaccgggacctaaaatcgaacaacattttacttggtgaggatatggaaccgaaaattgcagattttggattggcaaggctgctaggagaaggccatactcatactaggacgactagagttgttggaacattgtaagttcatctgcataataaaaccttcactcacgactaatcacacatatattgatcaatgtatgtttccaagcctaatgctgataacttctgcagcggttatatggcacccgagtatgcaatagatggaaatgtgtcaaccaagatcgatatttttagctttggtgtgttggtcctcgaaatagtaacgaggagaaggaactgcaattctgatgatcatgatcttgtgaatctccttagtgatgtaagtgctgagtaatgctgacataccttactccagtatatatgcttccatttttattgcatttgcatactgaaactagtcatgatttcaaatctgaaagtactctcaaacaagtttccgattaacaaactcatgtcaatccgtctaacaggtctggaattgctggacaaaagggacggtttcccaaatgattgaccaatcgcttcacggatattctcaaagccaagcactgcgatgcatccacattgcgctgttgtgcgtccagtcagaccctaacgatagacctcagatatcatctgtcattttcatgttgacccgagaaaacatggagcttcagccaccagcacaacctgcattcttctttgggggaggatcagcttcctcttctccttcatttgggcaacgcagctatgtgtatgaccgatgtggttttgataacatttctgtaaacggtgttacactcactgagccatatcctagatgactagtatgtcatactagggcacatttttaatgggtaataaatcatggaaccttaccatgtccatgcaatgatgcaattaa More
CDS seq		atgctcgccggctatgtctacggtggtggcatcctcgccgtcgttctcgccgtcgtcgtcgtcacgctgccgctgccggccacggcggctccggtcgctgaatgcgaccccggtgtcgccaacacgaacgtgaccggcaacagcgctttcgacaggaacctgggcctcctcgccgcggcgctcgccgccaacgcctctgccgccggcgccccgggcttcgccgtccgcaccgccggcgcggcgcccgaccaggtctacgcgctggcgctctgccgcggcgacgtgaacgcctcggcttgccgcgcgtgcgtcgcggcggcgttcgtcgacgcgaagggcgtctgccccggcggcatctccctgtacgaggacgcctgcttgatccgcttcaccggccagagcttcatggatttcctcaggccggacaagtggcaggtctcccagatgacagaaactgatttgctcctcgtcctaaacagttggattcccggccaagcctcggggaacgtcaaggtgccggaggtcggctggttcaacgccgccgtggcaaagatcctcgccgccctggtcgagcacgcctgggccacgacgacgacgacgacgacgggcaacaactcgaccaccaccatcaagtatttcgccacgggtgaggagagcttcaaccccaagatctacgggttcgcgcagtgcgtgccggtcctgacgccggagcagtgcaaggaatgccttaggagcctccacgataatgcgaaaacggtgtacatgggcaacagcctccggtgggttgggaagaaaaagagtgcagcaggagtcgctgcaggcctggcttgttcagttttggtactgttgatccttgcagtttttgcattcgttcggttcaagaggaggaccaaggctgtcgaggctgaccacccattgaagaagataacaagagcacaatgcatgatttttgatctgcctacgctgcaagaggcaactgagaacttctcggagaacaataaactgggagaaggtggttttggttcagtatacaagggaatattgtatctacacgaggactcgagcttgaggatcattcaccgggacctaaaatcgaacaacattttacttggtgaggatatggaaccgaaaattgcagattttggattggcaaggctgctaggagaaggccatactcatactaggacgactagagttgttggaacattcggttatatggcacccgagtatgcaatagatggaaatgtgtcaaccaagatcgatatttttagctttggtgtgttggtcctcgaaatagtaacgaggagaaggaactgcaattctgatgatcatgatcttgtgaatctccttagtgatgtctggaattgctggacaaaagggacggtttcccaaatgattgaccaatcgcttcacggatattctcaaagccaagcactgcgatgcatccacattgcgctgttgtgcgtccagtcagaccctaacgatagacctcagatatcatctgtcattttcatgttgacccgagaaaacatggagcttcagccaccagcacaacctgcattcttctttgggggaggatcagcttcctcttctccttcatttgggcaacgcagctatgtgtatgaccgatgtggttttgataacatttctgtaaacggtgttacactcactgagccatatcctagatga More
Protein seq		MLAGYVYGGGILAVVLAVVVVTLPLPATAAPVAECDPGVANTNVTGNSAFDRNLGLLAAALAANASAAGAPGFAVRTAGAAPDQVYALALCRGDVNASACRACVAAAFVDAKGVCPGGISLYEDACLIRFTGQSFMDFLRPDKWQVSQMTETDLLLVLNSWIPGQASGNVKVPEVGWFNAAVAKILAALVEHAWATTTTTTTGNNSTTTIKYFATGEESFNPKIYGFAQCVPVLTPEQCKECLRSLHDNAKTVYMGNSLRWVGKKKSAAGVAAGLACSVLVLLILAVFAFVRFKRRTKAVEADHPLKKITRAQCMIFDLPTLQEATENFSENNKLGEGGFGSVYKGILYLHEDSSLRIIHRDLKSNNILLGEDMEPKIADFGLARLLGEGHTHTRTTRVVGTFGYMAPEYAIDGNVSTKIDIFSFGVLVLEIVTRRRNCNSDDHDLVNLLSDVWNCWTKGTVSQMIDQSLHGYSQSQALRCIHIALLCVQSDPNDRPQISSVIFMLTRENMELQPPAQPAFFFGGGSASSSPSFGQRSYVYDRCGFDNISVNGVTLTEPYPR
Function		Cysteine-rich receptor-like protein kinase 19 [UniProtKB/Swiss-Prot:Q8GWJ7]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsCMeo_07g0018030	OsCMeo_07g0018030.01	Chr07	20812844	20816385	+	NAM
CDS seq	atgctcgccggctatgtctacggtggtggcatcctcgccgtcgttctcgccgtcgtcgtcgtcacgctgccgctgccggccacggcggctccggtcgctgaatgcgaccccggtgtcgccaacacgaacgtgaccggcaacagcgctttcgacaggaacctgggcctcctcgccgcggcgctcgccgccaacgcctctgccgccggcgccccgggcttcgccgtccgcaccgccggcgcggcgcccgaccaggtctacgcgctggcgctctgccgcggcgacgtgaacgcctcggcttgccgcgcgtgcgtcgcggcggcgttcgtcgacgcgaagggcgtctgccccggcggcatctccctgtacgaggacgcctgcttgatccgcttcaccggccagagcttcatggatttcctcaggccggacaagtggcaggtctcccagatgacagaaactgatttgctcctcgtcctaaacagttggattcccggccaagcctcggggaacgtcaaggtgccggaggtcggctggttcaacgccgccgtggcaaagatcctcgccgccctggtcgagcacgcctgggccacgacgacgacgacgacgacgggcaacaactcgaccaccaccatcaagtatttcgccacgggtgaggagagcttcaaccccaagatctacgggttcgcgcagtgcgtgccggtcctgacgccggagcagtgcaaggaatgccttaggagcctccacgataatgcgaaaacggtgtacatgggcaacagcctccggtgggttgggaagaaaaagagtgcagcaggagtcgctgcaggcctggcttgttcagttttggtactgttgatccttgcagtttttgcattcgttcggttcaagaggaggaccaaggctgtcgaggctgaccacccattgaagaagataacaagagcacaatgcatgatttttgatctgcctacgctgcaagaggcaactgagaacttctcggagaacaataaactgggagaaggtggttttggttcagtatacaagggaatattgtatctacacgaggactcgagcttgaggatcattcaccgggacctaaaatcgaacaacattttacttggtgaggatatggaaccgaaaattgcagattttggattggcaaggctgctaggagaaggccatactcatactaggacgactagagttgttggaacattcggttatatggcacccgagtatgcaatagatggaaatgtgtcaaccaagatcgatatttttagctttggtgtgttggtcctcgaaatagtaacgaggagaaggaactgcaattctgatgatcatgatcttgtgaatctccttagtgatgtctggaattgctggacaaaagggacggtttcccaaatgattgaccaatcgcttcacggatattctcaaagccaagcactgcgatgcatccacattgcgctgttgtgcgtccagtcagaccctaacgatagacctcagatatcatctgtcattttcatgttgacccgagaaaacatggagcttcagccaccagcacaacctgcattcttctttgggggaggatcagcttcctcttctccttcatttgggcaacgcagctatgtgtatgaccgatgtggttttgataacatttctgtaaacggtgttacactcactgagccatatcctagatga More
Protein seq	MLAGYVYGGGILAVVLAVVVVTLPLPATAAPVAECDPGVANTNVTGNSAFDRNLGLLAAALAANASAAGAPGFAVRTAGAAPDQVYALALCRGDVNASACRACVAAAFVDAKGVCPGGISLYEDACLIRFTGQSFMDFLRPDKWQVSQMTETDLLLVLNSWIPGQASGNVKVPEVGWFNAAVAKILAALVEHAWATTTTTTTGNNSTTTIKYFATGEESFNPKIYGFAQCVPVLTPEQCKECLRSLHDNAKTVYMGNSLRWVGKKKSAAGVAAGLACSVLVLLILAVFAFVRFKRRTKAVEADHPLKKITRAQCMIFDLPTLQEATENFSENNKLGEGGFGSVYKGILYLHEDSSLRIIHRDLKSNNILLGEDMEPKIADFGLARLLGEGHTHTRTTRVVGTFGYMAPEYAIDGNVSTKIDIFSFGVLVLEIVTRRRNCNSDDHDLVNLLSDVWNCWTKGTVSQMIDQSLHGYSQSQALRCIHIALLCVQSDPNDRPQISSVIFMLTRENMELQPPAQPAFFFGGGSASSSPSFGQRSYVYDRCGFDNISVNGVTLTEPYPR More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsCMeo_07g0018030	OsCMeo_07g0018030.02	Chr07	20812999	20816366	+	IsoSeq
CDS seq	atgcgaccccggtgtcgccaacacgaacgtgaccggcaacagcgctttcgacaggaacctgggcctcctcgccgcggcgctcgccgccaacgcctctgccgccggcgccccgggcttcgccgtccgcaccgccggcgcggcgcccgaccaggtctacgcgctggcgctctgccgcggcgacgtgaacgcctcggcttgccgcgcgtgcgtcgcggcggcgttcgtcgacgcgaagggcgtctgccccggcggcatctccctgtacgaggacgcctgcttgatccgcttcaccggccagagcttcatggatttcctcaggccggacaagtggcaggtctcccagatgacttggattcccggccaagcctcggggaacgtcaaggtgccggaggtcggctggttcaacgccgccgtggcaaagatcctcgccgccctggtcgagcacgcctgggccacgacgacgacgacgacgacgggcaacaactcgaccaccaccatcaagtatttcgccac More
Protein seq	MRPRCRQHERDRQQRFRQEPGPPRRGARRQRLCRRRPGLRRPHRRRGARPGLRAGALPRRRERLGLPRVRRGGVRRREGRLPRRHLPVRGRLLDPLHRPELHGFPQAGQVAGLPDDLDSRPSLGERQGAGGRLVQRRRGKDPRRPGRARLGHDDDDDDGQQLDHHHQVFRH

Event Type	Chromosome	Start	End	Strand	Alternative mRNAs	Total mRNAs	Source
A3	Chr07	20813484	20813579	+	OsCMeo_07g0018030.01	OsCMeo_07g0018030.01,OsCMeo_07g0018030.02	All
A5	Chr07	20813886	20814331	+	OsCMeo_07g0018030.02	OsCMeo_07g0018030.01,OsCMeo_07g0018030.02	All

Expression

	Leaf	Root	Panicle
FPKM	0.390673	1.121582	1.139391

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0539700	RBH	1.807035	0.323168	0.385955
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g35540	RBH	1.204829	0.214301	0.097955
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0539700	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0018120	RBH	0.919784	2.928725	0.424692
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0018050	RBH	0.114372	0.0	0.863869
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0017960	RBH	0.000000	4.019771	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0017920	RBH	0.109377	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0018050	RBH	0.347667	1.252696	2.195870
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0346800	RBH	2.1183005	30.0820495	0.4533895
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0018550	RBH	0.121958	0.328451	0.116357
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0358400	SBH	1.1841445	13.820534	1.580925
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0017810	RBH	0.000000	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0017960	RBH	0.000000	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0017840	RBH	0.472402	2.524319	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0018130	RBH	0.000000	0.000000	0.133223
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0017910	RBH	0.120184	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G017860	RBH	0.0	0.441035	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0017850	RBH	0.220737	9.852653	0.499125

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.