Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0587000 | OGI:06063770 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:22992411-22995912 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCATGTTTGGGCGTCTTGTCCTCAGGCATTGTTTGGCTTTGCCTATCCATTATCTTTATGATTCTACCAATAGCCATCAGTGATGAACATGAAAATGATCGTCAAGCTCTCCTATGCTTCAAGTCCCAGCTCTCAGGTCCACCGGGAGTACTAGCCTCATGGAGCAATGCGTCCCAGGAGTTCTGCAATTGGCATGGTGTCACTTGCAGCACACCATCTCCCCGTCGTGTCACTGCAATAGACTTGGCATCAGAAGGCATCTCTGGCTCCATATCACCTTGCATTGCCAACCTCACCTCTCTTACAATGTTGCAACTATCAAACAATAGCTTCAATGGCAGCATACCTTCAGTGCTCGGTCTACTCGGACAACTCAACAACCTCAACCTCAGCATGAACTCTCTAGAAGGTAACATCCCTTCTGAACTTTCTTCATGTTCCCAACTTGAAATCTTAGATTTGTCGAACAATTTCATCCAAGGTGAAATCCCAGCTAGCCTAAGTCAATGCAATCGTCTTAAAAAGATTCACCTCAGCAAGAACAAGCTCCAGGGGAGGATCCCTTATGCTTTTGGGAACCTTCCTAAGCTTGAAAAAGTTGTTCTTGCTAGCAATAGACTCACCGGCGACATACCAGCGTCTTTAGGAAGCAGCCTTTCGCTCACATATGTTAATCTCGAGAGCAATGCTCTCACAGGGAGCATACCACAGTCCTTACTGAATAGTTCATCCCTCAAAGTACTTGTCCTCACGAGAAATACCCTTACTGGAGAAATCCCAAAGCCTTTGTTCACCTCCTCAACTCTTACTGATATTTACCTTGATGAGAATAACTTTGTTGGTTCTATACCACATGTTACTGCCACCCCTCTCCCTTTACAGTATCTATATTTAGGGGGTAACAAACTATCAGGAACAATACCTTCCTCATTAGGAAATCTTTCCTCCCTACTTGATCTAAGTCTCACACGGAACAATTTAACCGGTAGCATACCAGATAGTTTAGGCCATATTCCAACACTAGAACTGTTGAATTTGAATGTAAACAAATTAACTGGGCATGTTCCATCATCCATCTTCAACTTGTCATCCCTGAAAAGTCTAGCCATGGCAAATAACTCACTCACAGGGGAATTACCATCAAACTTAGGTTATACACTCCCAAATATTAAAACATTAATTCTGTCCAATAATAGGTTCAAAGGCCCAATCCCACCTACTCTTGTCAATGCTTCCAATCTGAAATCGCTGTACTTGCGCAATAATAGCCTTACTGGGCTCATTCCTTTCTTTGGATCATTGCTAAATTTGGAGGAAGTTATGTTGTCATACAACAAGCTGGAAGCAGCTGACTGGAGTTTTATTTCATCACTATCGAATTGCTCCAAATTGACAAAACTATTGATAGATGGGAACAATCTCAAAGGTAAACTGCCTCGTTCCATTGGCAATCTTTCCAGTAGTCTCAAATGGTTGTGGCTAAGAGACAACAAAATTTCTGGGCATATACCACCAGAGTTGGGAAATCTAAAGGGCTTGGAAATGTTGTACATGGATTACAATCTTTTGACAGGAAACATACCCCCGGCAATTGGAAATTTGAACAACTTGGTCGTTCTAGCCATGGCCCAAAACAACCTGTCAGGACAAATCCCTGATACAATTGGCAACCTTGTTAAGCTAACCGATCTGAAGTTAGATAGGAATTACTTTAGTGGAGGCATACCAGCAACTCTAGAGCATTGTACTCAACTGGCAATACTCAACCTTGCCCATAACTCACTAGATGGAAGAATACCAAATCAGATCTTCAAAATTTTGTCACTTCCCAAGAGTTGGACCTGTCACACAATTACTTGTTCGGAGGAATACCAGAGGAAGTTGGAAATCTCATTAATCTGAAAAACCTTAGCATCTCAAACAACAGGTTGTCTGGCAACATCCCATCCTCTCTTGGCAAGTGTGTTGCTCTGGAGTCTCTTGAGATGCAAAGCAACTTATTAGTAGGAAGCATACCAAAATCTTTTGAGAAGTTGGTAGGCATCTGGAATATGGATATTTCACAGAACAACTTGACTGGAAAAATACCAGATTTTCTTTCAAACTTCAGTTTACTATATGATCTGAATTTATCATTCAACAATTTTGAAGGAGAAGTTCCAGCAGGTGGTATTTTTCGTAATGCTAGTGTGGTATCAATAGAAGGGAATAATGGCTTGTGTGCAAGAACATCAATGGGAGGTATACCACTTTGCTCAGTACAGGTTCACAGGAATAGGAGACACAAGTCTTTGGTTCTAGTCCTAATGATAGTAATACCAATTGTTTCTATCACTATCATTCTATTAAGTTTTGCTGCATTTTTTTGGAGGAAGAGAATGCAGGTTACTCCAAAATTGCCACAATGTAATGAGCATGTGTTTAAGAATATTACATATGAAAACATTGCCAAGGCCACAAATAAGTTTTCTTCAGATAACTTAATTGGATCAGGATCATTTGCAATGGTTTATAAGGGTAATTTGGAGCTTCAGGAAGATGAAGTTGCCATCAAGATTTTTAATCTTGGTACATATGGAGCACACAGAGGTTTCATTGCAGAGTGTGAAACCCTAAGAAATGTCCGCCATCGAAATCTTGTGAAAATCATCACTTTATGTTCTTCAGTGGATGCCACTGGGGCAGACTTCAAGGCTTTGGTGTTCCAATACATGCAGAACGGGAACTTAGACACGTGGCTACATCCAAAGTCCCAAGAACTTAGCCAAGGAAAGGTTCTAACTATTAGCCAAAGAGTTAATATTGCCTTGGATGTGGCGTTTGCTTTAGATTATCTTCATAACCAATGTGCAACGCCACTAATACATTGTGACTTGAAGCCAAGCAATATTCTTTTGGATCTTGATATGGTTGCATATGTCAGTGACTTTGGCCTAGCAAGATTTGTGTACAATAGATTGACTGCACATGAAGATACCTCAACAAGTTTGGCTTGCCTAAAAGGGTCAATTGGATACATCCCACCAGGTAAATAGGCTTCCAAACTTTTGACTCAGTTTGTTCTTTATATACTTGTACAGAAATTTTAAAAAATAGAGCCTAGCCTTATAGTTTTATAAAATTTAATGCAGAGTACGGCATGAGGAAAGATATCTCAACCAAGGGTGATGTCTACAGTTTTGGAATACTTTTGTTAGAAATTATAATTGGGAGCAGGCCAACTGATGAAAAATTTAATGGCAGCACAACCCTGCATGAATTTGTTCATGGAGCATTTCCCAATAATATCTACGAGGTAGTTGATCCAACCATGCTACAAAATGACCTTGTTGCAACCGATGTGATGGAGAATTGTATCATTCCATTGGTCAAAATAGGCCTATGTTGTTCTGTGCCACTGCCCAACGAACGACCAGAAATGGGACAAGTTGCAACCATGATTCTTGAAATCAAGCACGCGGCCTCAAACAGGCATGTCAGATTAAGCTAACAGCTGCCA
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| CDS seq | ATGGCATGTTTGGGCGTCTTGTCCTCAGGCATTGTTTGGCTTTGCCTATCCATTATCTTTATGATTCTACCAATAGCCATCAGTGATGAACATGAAAATGATCGTCAAGCTCTCCTATGCTTCAAGTCCCAGCTCTCAGGTCCACCGGGAGTACTAGCCTCATGGAGCAATGCGTCCCAGGAGTTCTGCAATTGGCATGGTGTCACTTGCAGCACACCATCTCCCCGTCGTGTCACTGCAATAGACTTGGCATCAGAAGGCATCTCTGGCTCCATATCACCTTGCATTGCCAACCTCACCTCTCTTACAATGTTGCAACTATCAAACAATAGCTTCAATGGCAGCATACCTTCAGTGCTCGGTCTACTCGGACAACTCAACAACCTCAACCTCAGCATGAACTCTCTAGAAGGTAACATCCCTTCTGAACTTTCTTCATGTTCCCAACTTGAAATCTTAGATTTGTCGAACAATTTCATCCAAGGTGAAATCCCAGCTAGCCTAAGTCAATGCAATCGTCTTAAAAAGATTCACCTCAGCAAGAACAAGCTCCAGGGGAGGATCCCTTATGCTTTTGGGAACCTTCCTAAGCTTGAAAAAGTTGTTCTTGCTAGCAATAGACTCACCGGCGACATACCAGCGTCTTTAGGAAGCAGCCTTTCGCTCACATATGTTAATCTCGAGAGCAATGCTCTCACAGGGAGCATACCACAGTCCTTACTGAATAGTTCATCCCTCAAAGTACTTGTCCTCACGAGAAATACCCTTACTGGAGAAATCCCAAAGCCTTTGTTCACCTCCTCAACTCTTACTGATATTTACCTTGATGAGAATAACTTTGTTGGTTCTATACCACATGTTACTGCCACCCCTCTCCCTTTACAGTATCTATATTTAGGGGGTAACAAACTATCAGGAACAATACCTTCCTCATTAGGAAATCTTTCCTCCCTACTTGATCTAAGTCTCACACGGAACAATTTAACCGGTAGCATACCAGATAGTTTAGGCCATATTCCAACACTAGAACTGTTGAATTTGAATGTAAACAAATTAACTGGGCATGTTCCATCATCCATCTTCAACTTGTCATCCCTGAAAAGTCTAGCCATGGCAAATAACTCACTCACAGGGGAATTACCATCAAACTTAGGTTATACACTCCCAAATATTAAAACATTAATTCTGTCCAATAATAGGTTCAAAGGCCCAATCCCACCTACTCTTGTCAATGCTTCCAATCTGAAATCGCTGTACTTGCGCAATAATAGCCTTACTGGGCTCATTCCTTTCTTTGGATCATTGCTAAATTTGGAGGAAGTTATGTTGTCATACAACAAGCTGGAAGCAGCTGACTGGAGTTTTATTTCATCACTATCGAATTGCTCCAAATTGACAAAACTATTGATAGATGGGAACAATCTCAAAGGTAAACTGCCTCGTTCCATTGGCAATCTTTCCAGTAGTCTCAAATGGTTGTGGCTAAGAGACAACAAAATTTCTGGGCATATACCACCAGAGTTGGGAAATCTAAAGGGCTTGGAAATGTTGTACATGGATTACAATCTTTTGACAGGAAACATACCCCCGGCAATTGGAAATTTGAACAACTTGGTCGTTCTAGCCATGGCCCAAAACAACCTGTCAGGACAAATCCCTGATACAATTGGCAACCTTGTTAAGCTAACCGATCTGAAGTTAGATAGGAATTACTTTAGTGGAGGCATACCAGCAACTCTAGAGCATTGTACTCAACTGGCAATACTCAACCTTGCCCATAACTCACTAGATGGAAGAATACCAAATCAGATCTTCAAAATTTTGTCACTTCCCAAGAGTTGGACCTGTCACACAATTACTTGTTCGGAGGAATACCAGAGGAAGTTGGAAATCTCATTAATCTGA
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| Protein seq | MACLGVLSSGIVWLCLSIIFMILPIAISDEHENDRQALLCFKSQLSGPPGVLASWSNASQEFCNWHGVTCSTPSPRRVTAIDLASEGISGSISPCIANLTSLTMLQLSNNSFNGSIPSVLGLLGQLNNLNLSMNSLEGNIPSELSSCSQLEILDLSNNFIQGEIPASLSQCNRLKKIHLSKNKLQGRIPYAFGNLPKLEKVVLASNRLTGDIPASLGSSLSLTYVNLESNALTGSIPQSLLNSSSLKVLVLTRNTLTGEIPKPLFTSSTLTDIYLDENNFVGSIPHVTATPLPLQYLYLGGNKLSGTIPSSLGNLSSLLDLSLTRNNLTGSIPDSLGHIPTLELLNLNVNKLTGHVPSSIFNLSSLKSLAMANNSLTGELPSNLGYTLPNIKTLILSNNRFKGPIPPTLVNASNLKSLYLRNNSLTGLIPFFGSLLNLEEVMLSYNKLEAADWSFISSLSNCSKLTKLLIDGNNLKGKLPRSIGNLSSSLKWLWLRDNKISGHIPPELGNLKGLEMLYMDYNLLTGNIPPAIGNLNNLVVLAMAQNNLSGQIPDTIGNLVKLTDLKLDRNYFSGGIPATLEHCTQLAILNLAHNSLDGRIPNQIFKILSLPKSWTCHTITCSEEYQRKLEISLI |
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| Function | LRR receptor-like serine/threonine-protein kinase FLS2 [UniProtKB/Swiss-Prot:Q9FL28] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0587000 | OsNip_06t0587000-00 | Chr06 | 22992411 | 22995912 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCATGTTTGGGCGTCTTGTCCTCAGGCATTGTTTGGCTTTGCCTATCCATTATCTTTATGATTCTACCAATAGCCATCAGTGATGAACATGAAAATGATCGTCAAGCTCTCCTATGCTTCAAGTCCCAGCTCTCAGGTCCACCGGGAGTACTAGCCTCATGGAGCAATGCGTCCCAGGAGTTCTGCAATTGGCATGGTGTCACTTGCAGCACACCATCTCCCCGTCGTGTCACTGCAATAGACTTGGCATCAGAAGGCATCTCTGGCTCCATATCACCTTGCATTGCCAACCTCACCTCTCTTACAATGTTGCAACTATCAAACAATAGCTTCAATGGCAGCATACCTTCAGTGCTCGGTCTACTCGGACAACTCAACAACCTCAACCTCAGCATGAACTCTCTAGAAGGTAACATCCCTTCTGAACTTTCTTCATGTTCCCAACTTGAAATCTTAGATTTGTCGAACAATTTCATCCAAGGTGAAATCCCAGCTAGCCTAAGTCAATGCAATCGTCTTAAAAAGATTCACCTCAGCAAGAACAAGCTCCAGGGGAGGATCCCTTATGCTTTTGGGAACCTTCCTAAGCTTGAAAAAGTTGTTCTTGCTAGCAATAGACTCACCGGCGACATACCAGCGTCTTTAGGAAGCAGCCTTTCGCTCACATATGTTAATCTCGAGAGCAATGCTCTCACAGGGAGCATACCACAGTCCTTACTGAATAGTTCATCCCTCAAAGTACTTGTCCTCACGAGAAATACCCTTACTGGAGAAATCCCAAAGCCTTTGTTCACCTCCTCAACTCTTACTGATATTTACCTTGATGAGAATAACTTTGTTGGTTCTATACCACATGTTACTGCCACCCCTCTCCCTTTACAGTATCTATATTTAGGGGGTAACAAACTATCAGGAACAATACCTTCCTCATTAGGAAATCTTTCCTCCCTACTTGATCTAAGTCTCACACGGAACAATTTAACCGGTAGCATACCAGATAGTTTAGGCCATATTCCAACACTAGAACTGTTGAATTTGAATGTAAACAAATTAACTGGGCATGTTCCATCATCCATCTTCAACTTGTCATCCCTGAAAAGTCTAGCCATGGCAAATAACTCACTCACAGGGGAATTACCATCAAACTTAGGTTATACACTCCCAAATATTAAAACATTAATTCTGTCCAATAATAGGTTCAAAGGCCCAATCCCACCTACTCTTGTCAATGCTTCCAATCTGAAATCGCTGTACTTGCGCAATAATAGCCTTACTGGGCTCATTCCTTTCTTTGGATCATTGCTAAATTTGGAGGAAGTTATGTTGTCATACAACAAGCTGGAAGCAGCTGACTGGAGTTTTATTTCATCACTATCGAATTGCTCCAAATTGACAAAACTATTGATAGATGGGAACAATCTCAAAGGTAAACTGCCTCGTTCCATTGGCAATCTTTCCAGTAGTCTCAAATGGTTGTGGCTAAGAGACAACAAAATTTCTGGGCATATACCACCAGAGTTGGGAAATCTAAAGGGCTTGGAAATGTTGTACATGGATTACAATCTTTTGACAGGAAACATACCCCCGGCAATTGGAAATTTGAACAACTTGGTCGTTCTAGCCATGGCCCAAAACAACCTGTCAGGACAAATCCCTGATACAATTGGCAACCTTGTTAAGCTAACCGATCTGAAGTTAGATAGGAATTACTTTAGTGGAGGCATACCAGCAACTCTAGAGCATTGTACTCAACTGGCAATACTCAACCTTGCCCATAACTCACTAGATGGAAGAATACCAAATCAGATCTTCAAAATTTTGTCACTTCCCAAGAGTTGGACCTGTCACACAATTACTTGTTCGGAGGAATACCAGAGGAAGTTGGAAATCTCATTAATCTGA
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| Protein seq | MACLGVLSSGIVWLCLSIIFMILPIAISDEHENDRQALLCFKSQLSGPPGVLASWSNASQEFCNWHGVTCSTPSPRRVTAIDLASEGISGSISPCIANLTSLTMLQLSNNSFNGSIPSVLGLLGQLNNLNLSMNSLEGNIPSELSSCSQLEILDLSNNFIQGEIPASLSQCNRLKKIHLSKNKLQGRIPYAFGNLPKLEKVVLASNRLTGDIPASLGSSLSLTYVNLESNALTGSIPQSLLNSSSLKVLVLTRNTLTGEIPKPLFTSSTLTDIYLDENNFVGSIPHVTATPLPLQYLYLGGNKLSGTIPSSLGNLSSLLDLSLTRNNLTGSIPDSLGHIPTLELLNLNVNKLTGHVPSSIFNLSSLKSLAMANNSLTGELPSNLGYTLPNIKTLILSNNRFKGPIPPTLVNASNLKSLYLRNNSLTGLIPFFGSLLNLEEVMLSYNKLEAADWSFISSLSNCSKLTKLLIDGNNLKGKLPRSIGNLSSSLKWLWLRDNKISGHIPPELGNLKGLEMLYMDYNLLTGNIPPAIGNLNNLVVLAMAQNNLSGQIPDTIGNLVKLTDLKLDRNYFSGGIPATLEHCTQLAILNLAHNSLDGRIPNQIFKILSLPKSWTCHTITCSEEYQRKLEISLI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0211900 | SBH | 0.359565 | 0.246918 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38760 | SBH | 0.0 | 0.0 | 0.084983 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0587000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020780 | SBH | 0.134115 | 1.062366 | 0.983788 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020630 | SBH | 0.074796 | 1.559916 | 0.439633 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020770 | SBH | 0.061624 | 1.131939 | 2.054540 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020560 | SBH | 0.029425 | 0.109404 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020830 | SBH | 0.318380 | 0.370122 | 1.666568 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0364500 | RBH | 0.1244195 | 0.3588415 | 0.8038995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020420 | SBH | 0.0 | 0.162646 | 0.125249 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0340400 | RBH | 0.135686 | 1.2786525 | 2.93894 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020740 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020780 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020400 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021120 | SBH | 0.042714 | 0.133546 | 0.067458 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020570 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020500 | SBH | 0.204530 | 0.0 | 0.306192 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020770 | SBH | 0.0 | 0.0 | 0.240122 |
