Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0583600 | OGI:06064590 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:22811046-22813269 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCGATTACAATAAATTAGAGGCAAACTACAACTCTGACTGGGATTTCTTGAATGCCTTGACAAACTGCACCCAACTATAAGTTCTGCAGTTAAGTTTCAATAGGCTTAGGGGTGTGCTACCACACTCACTTTCTAATCTTTCAATCAGCTTAGAACACCTTGCGATTCTCAACAATGAAGTAGGAGGAAATATACCTGAAGGAATTGGGAGGCTTTCTAATTTGATGGCACTTTACATGGGTCCTAATCTCCTCACTGGTTCCATACCTGCTTCTCTCGGAAAACTATCAAAATTGAATGTGATATCACTAGCTCAAAATAGACTATCAGGAGAGATCCCACCAACTCTTGGAAATCTCACACAGTTGAGTGAACTCTATCTATCTATGAATGCATTTACTGGGGAAATACCTTCAGCTCTTGGAAAATGCCCTTTAGGTGTATTAGCTCTTGCTTACAACAAACTTAGTGGAAATATACCAAAAGAAATTTTCTCGTCTAGTAGACTAAGATCCATTAGCTTGCTGAGCAACATGTTAGTAGGGCCCATGCCTTCGGAGCTTGGTCTATTGAAAAATTTGCAAGGTCTTGATTTCTCACAAAACAAGCTAACTGGTGAGATTCCCATCTCAATTGGAGGATGCCAGAGTTTGGAATTCCTTCTTGTTTCACAAAATTTCCTTCATGGTTCAATTCCTTCTACAATGAACAAGTTGACAGGCCTTCAAGAGCTAGATCTTTCAAGCAACAACATTTCGGGGATCATTCCAGTGTTTCTTGGCAGCTTTATTGGTCTCACGTATCTGAACCTCTCCTTCAACAACTTGATAGGTGAAGTTCCAGATGATGGGATATTTCGTAATGCAACTGCATTCTCAATTGTTGGAAATGTGGGCCTATGTGGGGGCATTCCAGTATTAAGTTTGCCATCATGTACAAACCAACAAGCAAGAGAGCATAAATTCCCAAAACTAGCTGTAGCCATGTCAGTGTCCATAACATGCTTGTTTCTTGTCATCGGCATAGGTTTGATCTCCGTTTTATGTAAGAAACATAAATCCAGCAGTGGACCGACATCTACCAGAGCTGTCAGGAATCAACTGCCAAGAGTTTCTTATACTGAGCTATCTATGGGAACAAATGGGTTCTCCTCTTCAAATCTCATTGGTGAAGGAAGATTTGGTTCAGTGTACAAGGCAAATATGAGTTTCGATCAATATAGTGTTGTTGCAGTAAAGGTACTCAAGCTCCAAGAGAGGGGAGCATCACATAGTTTTCTTGCGGAATGTGAGGCATTAAGATACCTACGGCATCGCAATCTTGTGAAGATATTAACAGCTTGCTCATCAATTGATCCTAGGGGGCATGATTTTAAAGCACTTATCTTTGAGTATCTACCAAATGGAAGCCTTGAAAAATGGTTGCATACTCATATAGATGAGCAAAGTGATCAAAGTGTCCTAAATATTTACCAGAAGCTAAGCATTGCCACCGATGTAGGATCTGCAGTGGAGTATCTTCATGATTACAAGCCAGTTCCAATAGTTCATTGTGATCTTAAGCCTAGCAATATTCTTCTAGACAGTGATATGATGGCTCATGTGGGTGACTTTGGACTGGCAAGGTTCACAAATCAAGGAGATAACAATGCATCTCAAGTCTCATCCAGCTGGGCCGCATTTAGAGGGACCATTGGATATGCTGCTCCAGGTGCGCATTTATCACTTGCCAAAAATATACTTCTTGCCTTGTTACCATTTAAAATATATGAGACATTTACGATACCTTGTAAATAATTAATTTACTTAGGTAATGACCCATTGAGCTTATGCTTGTGCTGCATTCACATTTTCAGAATATGGAATTGGCAATGAAGTTACTACAAGTGGAGATGTTTATAGCTATGGGATAATCTTACTAGAAATGTTTACAGGAAGAAGGCCTACCGAACAAAATTTTGAGGAGAATACTAACCTTCACAGGTTTGTTGAGGAAGCGCTGCCTGATAGTGTAGAGGATGTTGTGGACCAGAATCTCATATTACCAAGGGAAGACACAGAGATGGATCACAACACACTCCTAAACAAGGAAGCAGCACTTGCATGCATAACTTCTATTTTGAGGGTTGGTATCCTCTGTTCAAAACAATTGCCTACAGAACGGGTGCAAATACGAGATGCTGTAATAGAACTTCACAAAATCAAAGAAAAATTCTTTCCATGA
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| CDS seq | GTTCTGCAGTTAAGTTTCAATAGGCTTAGGGGTGTGCTACCACACTCACTTTCTAATCTTTCAATCAGCTTAGAACACCTTGCGATTCTCAACAATGAAGTAGGAGGAAATATACCTGAAGGAATTGGGAGGCTTTCTAATTTGATGGCACTTTACATGGGTCCTAATCTCCTCACTGGTTCCATACCTGCTTCTCTCGGAAAACTATCAAAATTGAATGTGATATCACTAGCTCAAAATAGACTATCAGGAGAGATCCCACCAACTCTTGGAAATCTCACACAGTTGAGTGAACTCTATCTATCTATGAATGCATTTACTGGGGAAATACCTTCAGCTCTTGGAAAATGCCCTTTAGGTGTATTAGCTCTTGCTTACAACAAACTTAGTGGAAATATACCAAAAGAAATTTTCTCGTCTAGTAGACTAAGATCCATTAGCTTGCTGAGCAACATGTTAGTAGGGCCCATGCCTTCGGAGCTTGGTCTATTGAAAAATTTGCAAGGTCTTGATTTCTCACAAAACAAGCTAACTGGTGAGATTCCCATCTCAATTGGAGGATGCCAGAGTTTGGAATTCCTTCTTGTTTCACAAAATTTCCTTCATGGTTCAATTCCTTCTACAATGAACAAGTTGACAGGCCTTCAAGAGCTAGATCTTTCAAGCAACAACATTTCGGGGATCATTCCAGTGTTTCTTGGCAGCTTTATTGGTCTCACGTATCTGAACCTCTCCTTCAACAACTTGATAGGTGAAGTTCCAGATGATGGGATATTTCGTAATGCAACTGCATTCTCAATTGTTGGAAATGTGGGCCTATGTGGGGGCATTCCAGTATTAAGTTTGCCATCATGTACAAACCAACAAGCAAGAGAGCATAAATTCCCAAAACTAGCTGTAGCCATGTCAGTGTCCATAACATGCTTGTTTCTTGTCATCGGCATAGGTTTGATCTCCGTTTTATGTAAGAAACATAAATCCAGCAGTGGACCGACATCTACCAGAGCTGTCAGGAATCAACTGCCAAGAGTTTCTTATACTGAGCTATCTATGGGAACAAATGGGTTCTCCTCTTCAAATCTCATTGGTGAAGGAAGATTTGGTTCAGTGTACAAGGCAAATATGAGTTTCGATCAATATAGTGTTGTTGCAGTAAAGGTACTCAAGCTCCAAGAGAGGGGAGCATCACATAGTTTTCTTGCGGAATGTGAGGCATTAAGATACCTACGGCATCGCAATCTTGTGAAGATATTAACAGCTTGCTCATCAATTGATCCTAGGGGGCATGATTTTAAAGCACTTATCTTTGAGTATCTACCAAATGGAAGCCTTGAAAAATGGTTGCATACTCATATAGATGAGCAAAGTGATCAAAGTGTCCTAAATATTTACCAGAAGCTAAGCATTGCCACCGATGTAGGATCTGCAGTGGAGTATCTTCATGATTACAAGCCAGTTCCAATAGTTCATTGTGATCTTAAGCCTAGCAATATTCTTCTAGACAGTGATATGATGGCTCATGTGGGTGACTTTGGACTGGCAAGGTTCACAAATCAAGGAGATAACAATGCATCTCAAGTCTCATCCAGCTGGGCCGCATTTAGAGGGACCATTGGATATGCTGCTCCAGAATATGGAATTGGCAATGAAGTTACTACAAGTGGAGATGTTTATAGCTATGGGATAATCTTACTAGAAATGTTTACAGGAAGAAGGCCTACCGAACAAAATTTTGAGGAGAATACTAACCTTCACAGGTTTGTTGAGGAAGCGCTGCCTGATAGTGTAGAGGATGTTGTGGACCAGAATCTCATATTACCAAGGGAAGACACAGAGATGGATCACAACACACTCCTAAACAAGGAAGCAGCACTTGCATGCATAACTTCTATTTTGAGGGTTGGTATCCTCTGTTCAAAACAATTGCCTACAGAACGGGTGCAAATACGAGATGCTGTAATAGAACTTCACAAAATCAAAGAAAAATTCTTTCCATGA
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| Protein seq | VLQLSFNRLRGVLPHSLSNLSISLEHLAILNNEVGGNIPEGIGRLSNLMALYMGPNLLTGSIPASLGKLSKLNVISLAQNRLSGEIPPTLGNLTQLSELYLSMNAFTGEIPSALGKCPLGVLALAYNKLSGNIPKEIFSSSRLRSISLLSNMLVGPMPSELGLLKNLQGLDFSQNKLTGEIPISIGGCQSLEFLLVSQNFLHGSIPSTMNKLTGLQELDLSSNNISGIIPVFLGSFIGLTYLNLSFNNLIGEVPDDGIFRNATAFSIVGNVGLCGGIPVLSLPSCTNQQAREHKFPKLAVAMSVSITCLFLVIGIGLISVLCKKHKSSSGPTSTRAVRNQLPRVSYTELSMGTNGFSSSNLIGEGRFGSVYKANMSFDQYSVVAVKVLKLQERGASHSFLAECEALRYLRHRNLVKILTACSSIDPRGHDFKALIFEYLPNGSLEKWLHTHIDEQSDQSVLNIYQKLSIATDVGSAVEYLHDYKPVPIVHCDLKPSNILLDSDMMAHVGDFGLARFTNQGDNNASQVSSSWAAFRGTIGYAAPEYGIGNEVTTSGDVYSYGIILLEMFTGRRPTEQNFEENTNLHRFVEEALPDSVEDVVDQNLILPREDTEMDHNTLLNKEAALACITSILRVGILCSKQLPTERVQIRDAVIELHKIKEKFFP |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q2R2D5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0583600 | OsNip_06t0583600-00 | Chr06 | 22811046 | 22813269 | + | RAP2018-11-26 | ||
| CDS seq | GTTCTGCAGTTAAGTTTCAATAGGCTTAGGGGTGTGCTACCACACTCACTTTCTAATCTTTCAATCAGCTTAGAACACCTTGCGATTCTCAACAATGAAGTAGGAGGAAATATACCTGAAGGAATTGGGAGGCTTTCTAATTTGATGGCACTTTACATGGGTCCTAATCTCCTCACTGGTTCCATACCTGCTTCTCTCGGAAAACTATCAAAATTGAATGTGATATCACTAGCTCAAAATAGACTATCAGGAGAGATCCCACCAACTCTTGGAAATCTCACACAGTTGAGTGAACTCTATCTATCTATGAATGCATTTACTGGGGAAATACCTTCAGCTCTTGGAAAATGCCCTTTAGGTGTATTAGCTCTTGCTTACAACAAACTTAGTGGAAATATACCAAAAGAAATTTTCTCGTCTAGTAGACTAAGATCCATTAGCTTGCTGAGCAACATGTTAGTAGGGCCCATGCCTTCGGAGCTTGGTCTATTGAAAAATTTGCAAGGTCTTGATTTCTCACAAAACAAGCTAACTGGTGAGATTCCCATCTCAATTGGAGGATGCCAGAGTTTGGAATTCCTTCTTGTTTCACAAAATTTCCTTCATGGTTCAATTCCTTCTACAATGAACAAGTTGACAGGCCTTCAAGAGCTAGATCTTTCAAGCAACAACATTTCGGGGATCATTCCAGTGTTTCTTGGCAGCTTTATTGGTCTCACGTATCTGAACCTCTCCTTCAACAACTTGATAGGTGAAGTTCCAGATGATGGGATATTTCGTAATGCAACTGCATTCTCAATTGTTGGAAATGTGGGCCTATGTGGGGGCATTCCAGTATTAAGTTTGCCATCATGTACAAACCAACAAGCAAGAGAGCATAAATTCCCAAAACTAGCTGTAGCCATGTCAGTGTCCATAACATGCTTGTTTCTTGTCATCGGCATAGGTTTGATCTCCGTTTTATGTAAGAAACATAAATCCAGCAGTGGACCGACATCTACCAGAGCTGTCAGGAATCAACTGCCAAGAGTTTCTTATACTGAGCTATCTATGGGAACAAATGGGTTCTCCTCTTCAAATCTCATTGGTGAAGGAAGATTTGGTTCAGTGTACAAGGCAAATATGAGTTTCGATCAATATAGTGTTGTTGCAGTAAAGGTACTCAAGCTCCAAGAGAGGGGAGCATCACATAGTTTTCTTGCGGAATGTGAGGCATTAAGATACCTACGGCATCGCAATCTTGTGAAGATATTAACAGCTTGCTCATCAATTGATCCTAGGGGGCATGATTTTAAAGCACTTATCTTTGAGTATCTACCAAATGGAAGCCTTGAAAAATGGTTGCATACTCATATAGATGAGCAAAGTGATCAAAGTGTCCTAAATATTTACCAGAAGCTAAGCATTGCCACCGATGTAGGATCTGCAGTGGAGTATCTTCATGATTACAAGCCAGTTCCAATAGTTCATTGTGATCTTAAGCCTAGCAATATTCTTCTAGACAGTGATATGATGGCTCATGTGGGTGACTTTGGACTGGCAAGGTTCACAAATCAAGGAGATAACAATGCATCTCAAGTCTCATCCAGCTGGGCCGCATTTAGAGGGACCATTGGATATGCTGCTCCAGAATATGGAATTGGCAATGAAGTTACTACAAGTGGAGATGTTTATAGCTATGGGATAATCTTACTAGAAATGTTTACAGGAAGAAGGCCTACCGAACAAAATTTTGAGGAGAATACTAACCTTCACAGGTTTGTTGAGGAAGCGCTGCCTGATAGTGTAGAGGATGTTGTGGACCAGAATCTCATATTACCAAGGGAAGACACAGAGATGGATCACAACACACTCCTAAACAAGGAAGCAGCACTTGCATGCATAACTTCTATTTTGAGGGTTGGTATCCTCTGTTCAAAACAATTGCCTACAGAACGGGTGCAAATACGAGATGCTGTAATAGAACTTCACAAAATCAAAGAAAAATTCTTTCCATGA
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| Protein seq | VLQLSFNRLRGVLPHSLSNLSISLEHLAILNNEVGGNIPEGIGRLSNLMALYMGPNLLTGSIPASLGKLSKLNVISLAQNRLSGEIPPTLGNLTQLSELYLSMNAFTGEIPSALGKCPLGVLALAYNKLSGNIPKEIFSSSRLRSISLLSNMLVGPMPSELGLLKNLQGLDFSQNKLTGEIPISIGGCQSLEFLLVSQNFLHGSIPSTMNKLTGLQELDLSSNNISGIIPVFLGSFIGLTYLNLSFNNLIGEVPDDGIFRNATAFSIVGNVGLCGGIPVLSLPSCTNQQAREHKFPKLAVAMSVSITCLFLVIGIGLISVLCKKHKSSSGPTSTRAVRNQLPRVSYTELSMGTNGFSSSNLIGEGRFGSVYKANMSFDQYSVVAVKVLKLQERGASHSFLAECEALRYLRHRNLVKILTACSSIDPRGHDFKALIFEYLPNGSLEKWLHTHIDEQSDQSVLNIYQKLSIATDVGSAVEYLHDYKPVPIVHCDLKPSNILLDSDMMAHVGDFGLARFTNQGDNNASQVSSSWAAFRGTIGYAAPEYGIGNEVTTSGDVYSYGIILLEMFTGRRPTEQNFEENTNLHRFVEEALPDSVEDVVDQNLILPREDTEMDHNTLLNKEAALACITSILRVGILCSKQLPTERVQIRDAVIELHKIKEKFFP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.120431 | 0.574042 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0211800 | SBH | 0.720620 | 0.353773 | 0.376538 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38490 | RBH | 0.000000 | 0.058048 | 0.105899 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0583600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020780 | SBH | 0.134115 | 1.062366 | 0.983788 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020480 | RBH | 0.035566 | 0.000000 | 0.040024 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020730 | SBH | 0.119523 | 0.974873 | 2.135322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020390 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020790 | RBH | 0.0 | 0.955273 | 0.955475 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0361800 | RBH | 0.134638 | 0.4822645 | 0.0898625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020200 | RBH | 0.054808 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0337500 | RBH | 0.1316725 | 0.675055 | 2.2701885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020650 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020690 | RBH | 0.0 | 0.858495 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020300 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020450 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020360 | RBH | 0.000000 | 0.0 | 0.100837 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020610 | RBH | 0.0 | 0.0 | 0.0 |
