Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0564700 | OGI:06007290 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:21730402-21733637 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCTATAATAAATAATGAAAAAGTCAATTAACTCTTATCAAGAAAATTGCAAAAGTGATTGAAGCCCAAAATAATGAACATGCCGACTGGCAACATACCAATAATTCAGAGATAACTAAAACAACAATGCATCAAGCTTAGAATTGTAAAGCTTTGCCCAGCCCAGCAATACTGCAGGAGTATTGGATCTCCAAAAGACACTATGGCTTTCTTGTACTATTCGGTGCCCAAAATCACAGGAATGATGTTCTCGCCCAACATCAAGATCCTGGATGCATTAGCACTCTTGAGCTTCCAATTTCATAATCTACGGGATCGATTTCTGAAATAATATGGCATTTTTTTTGTTCTCAAAACAGGAAAGGAGAAGAAAAACATAGCAAAATGGAGCGTGTGGTCTGAATTCTGAAGCAAATCTCTTTGCAGTACAGCAAAGGAGAGCTGCACCAAGACATTAGAAGGTCATATTAGCACATTCCTCCCTTACATCTGCAAAGAGATCAGAGCTCATGTATCTTTCACCACCACTCGGGAACATCGTAACAATCATCTTACCCTTGTTCTCCTCTCTAGCTGCAATCTGGTAAAATTCTTCAACAAGTCAGGTATCACGAAACGCAACGCAAGCAGGATTTTATGACTTGGTAAGATCATCGGTTTTTACCTTGATGCAAGCAGCTACATTTGCACCAGAAGATATGCCAACAAGAAGCCCCTCTTCCTTTGCAAGCCTTCTTGCCATTGCCATGGATTCCTCTGAGCTTACGGTCACAACTTCATCGATGATGGACCTGTCCAAAGTTTTCGGTATGAAACCTGGCCCAGTGCCTTGAATCTTGTGTGATCCTGGTGAACCACCTGAATACAATCAAGAAACAGTATTTTTACGCACATCGGAAAAGTAGGAAAACAGAATTCCGAGTATGCTGAATGGTCACATTTGGAGACTTGTCTTACAAAAAATAAATTTTACAAACTTCAGTGAATACAATCATTATGTTTGGAAAACTGGAACAGTCCCTACACAGAGAGAGCACTGGATTACCTGAAATTACAGCACTTTCTGAAGGTTCCACGCACACTATATTTATAGATGGATTTTTGATCTTCAGGTACCTTCCTACACCTGACAATGTGCCTCCTGTTCCAGCTGCGGTTACAAAGAAATCAACTTTGCCGGCTGTGTCCTTCCAAATTTCAGGTCCTGACATTTTCAGAAGATGAAAATGAAGCACCACCTCGATAGACAATAGATGATAAAAAAACATTTATGATTTCTGAAACATTGTAGTGTCGATTTCCATGAATAAATAAATAAATACCAGTCCATTTGAAATGTGCCTCTGGATTTGCTGGGTTGGTTGCTTGATTAAAACAATGATAATTAGGCATGATCTTCATGAGATCTTCCACTTTGTCCATCGCACCCTTGTACCCACCTGCAGGATCTGCAGCAAATGACAACATAGATTATTTAACACTTGTCAGAGAACACTGAAGATGTAAGAGAAAGAGTACTACTAGTAATTAGTTTAGCTATATAGGAGTATATGTAACAATATAAGCACAAGAAATGGCATAAAATTTATTCCATTCAAACTGAAAATATTTGTCAGAGTTAAAAAACTAATTGAGGCATTGTCTTTAAGTGCTTGTTGATGGTTTTTAATCTCTAACCATTCCTAGGAGCAGAGATCCTGGTTGTCACCTGTTAATATCAGTTCAGCACCCAAAAACCTCAATAGCATCTGCTTGTCAGGTGAATATCTAGCGGGCATAACAGCAATAAACCTGTAGCCTTTCTGAATAGCAACCAATACCAAACCGATACCAAGATTGCCACTGGTTGGTTCAATCAGTGTCGTAACACCGGGAGTAATGAGGCCTTTCTCCTCTGCATCTTCAATCATACTGCAGAAAAAAAAAAGAAGAAGAAATTTGCAAATGCCAGATCTCAGGTTGACCACATGGTTTGCATAGCTATCTATTGTGTGCTGAGATGATATATAGTAAACAGTTTCCTCTGGAAAAAAAATGATTTGATCTAAGAGAAAAAAAAACAGCATATATAATTGAACAAATGTAGTGCATAAATCTGCATTAGCTCACCTGAGAGCAGTTCTGTCCTTGACCGAGAACAGGGGTTGGTATGTTTCCATCTTCCCGATCAAACGAGTTTGGATGCCTTCTTTCTTGGGGATGTTCTTCATCTCAATCAGTGGCGTCCAGCCTATCAGCTGAACAACAAGATTAATTACAACGCTTTTATTTTTTTTAACTCGAGCTAGGGTAATCTTGAACGAAATCTTCACTCATAGCAAGTTTAATAGGAGAGCTAACTAATAGGTATAAATTCATATTAGAGTAAACATGTATAATGTATAATAGATTAGTTATAGGTTTTGTTCTATTGTTTTCCTCCTTTCTTTTTTTCTCGCTGTGAATTTAATTTATTTATCTTGAAGCAAGTGTAAAGTTATCTCTTGGGTGAGAGCAAATGCTCCATATATGTTTATGGGTAATTTTATCATCTTTAAATGTACCTGGAGGTACCATATTTTATAGTGTAAAATTTGGTGTGCAATTTTACCATCCAACTTTTGATACCTCGATGTACCACATTTTGCACACAAAATAGTACCTCAAGGTACCAAAAAATTTAGCATAAAATTTAGGTACATTAATGAATTTTCTCAAGAACTGTAAAATTTCTCTATATTTATAGTTCCCTTATAGCTAACTATTAAACCTACTCTAAATGGATTCCAAATCCTGAATTGTACACCCCAAAAGACTGAACTAACTTGAATACTCCCTCTGAATTATATTATAAGTTGCTTTGCCTTTTTTTTTTACCCTAATTTCTTTAGGTTTGACTAAGTCTTTAGAGAAATTTAGCAGCATCTATAACACCAAATTAATTTTATTAAATATAACATTGAACATATTTTGATAATATGTTTGTTTTGTATAGGAAATATTGCTATCCTTTTTATAAACCCTGTAAAACAAAAAAGAATATAAAAAAAATCAAAGCAACTTAAAATATAAAACGAAGGGAGAAGCAAACAACTGTTTCGAATTCTAAACCAGAGAAGAGGGATTTTACCTGGGCGATGTTGGAGGCGATGGTCTCCTCCCCCACGGCGGAGGAGAGCAGAGACGGGATACCCGTCCTCCCCTCCTCCACCTCAGCCGCCATTGCTGCTACCTCTCTTGTAGTTCCAGAGCAGCAT
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| CDS seq | ATGGCGGCTGAGGTGGAGGAGGGGAGGACGGGTATCCCGTCTCTGCTCTCCTCCGCCGTGGGGGAGGAGACCATCGCCTCCAACATCGCCCAGCTGATAGGCTGGACGCCACTGATTGAGATGAAGAACATCCCCAAGAAAGAAGGCATCCAAACTCGTTTGATCGGGAAGATGGAAACATACCAACCCCTGTTCTCGGTCAAGGACAGAACTGCTCTCAGTATGATTGAAGATGCAGAGGAGAAAGGCCTCATTACTCCCGGTGTTACGACACTGATTGAACCAACCAGTGGCAATCTTGGTATCGGTTTGGTATTGGTTGCTATTCAGAAAGGCTACAGGTTTATTGCTGTTATGCCCGCTAGATATTCACCTGACAAGCAGATGCTATTGAGGTTTTTGGGTGCTGAACTGATATTAACAGATCCTGCAGGTGGGTACAAGGGTGCGATGGACAAAGTGGAAGATCTCATGAAGATCATGCCTAATTATCATTGTTTTAATCAAGCAACCAACCCAGCAAATCCAGAGGCACATTTCAAATGGACTGGACCTGAAATTTGGAAGGACACAGCCGGCAAAGTTGATTTCTTTGTAACCGCAGCTGGAACAGGAGGCACATTGTCAGGTGTAGGAAGGTACCTGAAGATCAAAAATCCATCTATAAATATAGTGTGCGTGGAACCTTCAGAAAGTGCTGTAATTTCAGGTGGTTCACCAGGATCACACAAGATTCAAGGCACTGGGCCAGGTTTCATACCGAAAACTTTGGACAGGTCCATCATCGATGAAGTTGTGACCGTAAGCTCAGAGGAATCCATGGCAATGGCAAGAAGGCTTGCAAAGGAAGAGGGGCTTCTTGTTGGCATATCTTCTGGTGCAAATGTAGCTGCTTGCATCAAGATTGCAGCTAGAGAGGAGAACAAGGGTAAGATGATTGTTACGATGTTCCCGAGTGGTGGTGAAAGATACATGAGCTCTGATCTCTTTGCAGATGTAAGGGAGGAATGTGCTAATATGACCTTCTAA
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| Protein seq | MAAEVEEGRTGIPSLLSSAVGEETIASNIAQLIGWTPLIEMKNIPKKEGIQTRLIGKMETYQPLFSVKDRTALSMIEDAEEKGLITPGVTTLIEPTSGNLGIGLVLVAIQKGYRFIAVMPARYSPDKQMLLRFLGAELILTDPAGGYKGAMDKVEDLMKIMPNYHCFNQATNPANPEAHFKWTGPEIWKDTAGKVDFFVTAAGTGGTLSGVGRYLKIKNPSINIVCVEPSESAVISGGSPGSHKIQGTGPGFIPKTLDRSIIDEVVTVSSEESMAMARRLAKEEGLLVGISSGANVAACIKIAAREENKGKMIVTMFPSGGERYMSSDLFADVREECANMTF |
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| Function | Cysteine synthase, chloroplastic/chromoplastic [UniProtKB/Swiss-Prot:P32260] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0564700 | OsNip_06t0564700-01 | Chr06 | 21730402 | 21733637 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGCTGAGGTGGAGGAGGGGAGGACGGGTATCCCGTCTCTGCTCTCCTCCGCCGTGGGGGAGGAGACCATCGCCTCCAACATCGCCCAGCTGATAGGCTGGACGCCACTGATTGAGATGAAGAACATCCCCAAGAAAGAAGGCATCCAAACTCGTTTGATCGGGAAGATGGAAACATACCAACCCCTGTTCTCGGTCAAGGACAGAACTGCTCTCAGTATGATTGAAGATGCAGAGGAGAAAGGCCTCATTACTCCCGGTGTTACGACACTGATTGAACCAACCAGTGGCAATCTTGGTATCGGTTTGGTATTGGTTGCTATTCAGAAAGGCTACAGGTTTATTGCTGTTATGCCCGCTAGATATTCACCTGACAAGCAGATGCTATTGAGGTTTTTGGGTGCTGAACTGATATTAACAGATCCTGCAGGTGGGTACAAGGGTGCGATGGACAAAGTGGAAGATCTCATGAAGATCATGCCTAATTATCATTGTTTTAATCAAGCAACCAACCCAGCAAATCCAGAGGCACATTTCAAATGGACTGGACCTGAAATTTGGAAGGACACAGCCGGCAAAGTTGATTTCTTTGTAACCGCAGCTGGAACAGGAGGCACATTGTCAGGTGTAGGAAGGTACCTGAAGATCAAAAATCCATCTATAAATATAGTGTGCGTGGAACCTTCAGAAAGTGCTGTAATTTCAGGTGGTTCACCAGGATCACACAAGATTCAAGGCACTGGGCCAGGTTTCATACCGAAAACTTTGGACAGGTCCATCATCGATGAAGTTGTGACCGTAAGCTCAGAGGAATCCATGGCAATGGCAAGAAGGCTTGCAAAGGAAGAGGGGCTTCTTGTTGGCATATCTTCTGGTGCAAATGTAGCTGCTTGCATCAAGATTGCAGCTAGAGAGGAGAACAAGGGTAAGATGATTGTTACGATGTTCCCGAGTGGTGGTGAAAGATACATGAGCTCTGATCTCTTTGCAGATGTAAGGGAGGAATGTGCTAATATGACCTTCTAA
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| Protein seq | MAAEVEEGRTGIPSLLSSAVGEETIASNIAQLIGWTPLIEMKNIPKKEGIQTRLIGKMETYQPLFSVKDRTALSMIEDAEEKGLITPGVTTLIEPTSGNLGIGLVLVAIQKGYRFIAVMPARYSPDKQMLLRFLGAELILTDPAGGYKGAMDKVEDLMKIMPNYHCFNQATNPANPEAHFKWTGPEIWKDTAGKVDFFVTAAGTGGTLSGVGRYLKIKNPSINIVCVEPSESAVISGGSPGSHKIQGTGPGFIPKTLDRSIIDEVVTVSSEESMAMARRLAKEEGLLVGISSGANVAACIKIAAREENKGKMIVTMFPSGGERYMSSDLFADVREECANMTF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.786706 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0222100 | SBH | 0.271814 | 0.262845 | 0.726627 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g36880 | RBH | 0.0 | 0.0 | 0.202513 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0564700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019750 | RBH | 3.204084 | 6.071916 | 6.053240 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019630 | SBH | 2.389735 | 2.608440 | 6.487336 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019690 | SBH | 5.986929 | 6.079491 | 15.584403 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019460 | RBH | 0.845020 | 0.063212 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019890 | RBH | 23.270489 | 0.500802 | 29.218830 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0342300 | SBH | 13.653495 | 4.1981005 | 2.8100225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019360 | RBH | 1.876882 | 0.087896 | 2.189108 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0317000 | RBH | 4.2233925 | 2.004298 | 3.8527105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019820 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019830 | RBH | 0.252145 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019430 | SBH | 23.203489 | 0.756957 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020140 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019590 | SBH | 1.207079 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G019490 | SBH | 1.012165 | 0.000000 | 1.169915 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019670 | SBH | 3.447290 | 1.319442 | 5.884802 |
