Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0293000 | OGI:06028900 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:10756337-10757232 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTCACTATTGTATAGTTCATTGAGCTGTGAGCTCCCATGGAGTCGGAGGACTACATTTTCCTGTGGAAATGGCGCAAGTACCTCCTGCTGCTGGCCACGCTGGTGGCCGGCGTCACCTACGACGCCGGCCTCAACCCTCCCGGCGGCGTGTGGCCCGACGACACGGGTGGCCACGCCACCGGCGACCCGGTGCTCCCGGTGACGTTCCACAGCCGCTACCTCGCCTTCTTCTACTGCAACGCCACCGCCTTCGTCGCGTCGCTCGTCGTCATCATGATGCTGCTCGACCGCCGCGTCAGCGGCAACCGCGTCGGCGTCACCGTGCTCCGCTCCGCCATGGTGCTCGACCTGTTCGCGCTCATGGGCGCCTACGCCGCCGGGGTCAGCAGGGACGTGCTCGCCGTCGCCTACGTCTCGGCGCTGTTCGGCCTGGTGTTCGCGTACGTCGCGCTGCACATCGTCGTGGCCACGTCGGCGCTGCCGCCGGTGGAGTGGCTGCGCGCGTCGGCGAAGAGGCTCGCCGGCAAGGCGGAGGAGCTGCTCAGGAAGGGCGACGACGAGGAGGCAGCGTCGGCGTCGGCGTCGATGACGACGCGGCGCGTCGAGGAGGACCGGCAGGAGCGGCGCAAGTTCCTGCTGCTGCTGGCCACGTTCGCGACGCCGCTGACGTACGCCGCCGGGTTCGATCCGCCGGGCGGCTTCTGGGACAGCACCGGCGGCGGCCACACCGCCGGCGTCCCCGTGCTCCGCGACGGCCCGTCCAGGAGCCGCTACAGGGCGTTCTTCTACTGCAACGCCACGTCGTTCGTGGCGTCGCTCGCCATCGTCATGCTGCTGATGAGCCGCACGCTGAGCCGCCGCGTCGCCCGGTCGTACGCGCTGCAGGTGTGCGTGA
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| CDS seq | ATGGAGTCGGAGGACTACATTTTCCTGTGGAAATGGCGCAAGTACCTCCTGCTGCTGGCCACGCTGGTGGCCGGCGTCACCTACGACGCCGGCCTCAACCCTCCCGGCGGCGTGTGGCCCGACGACACGGGTGGCCACGCCACCGGCGACCCGGTGCTCCCGGTGACGTTCCACAGCCGCTACCTCGCCTTCTTCTACTGCAACGCCACCGCCTTCGTCGCGTCGCTCGTCGTCATCATGATGCTGCTCGACCGCCGCGTCAGCGGCAACCGCGTCGGCGTCACCGTGCTCCGCTCCGCCATGGTGCTCGACCTGTTCGCGCTCATGGGCGCCTACGCCGCCGGGGTCAGCAGGGACGTGCTCGCCGTCGCCTACGTCTCGGCGCTGTTCGGCCTGGTGTTCGCGTACGTCGCGCTGCACATCGTCGTGGCCACGTCGGCGCTGCCGCCGGTGGAGTGGCTGCGCGCGTCGGCGAAGAGGCTCGCCGGCAAGGCGGAGGAGCTGCTCAGGAAGGGCGACGACGAGGAGGCAGCGTCGGCGTCGGCGTCGATGACGACGCGGCGCGTCGAGGAGGACCGGCAGGAGCGGCGCAAGTTCCTGCTGCTGCTGGCCACGTTCGCGACGCCGCTGACGTACGCCGCCGGGTTCGATCCGCCGGGCGGCTTCTGGGACAGCACCGGCGGCGGCCACACCGCCGGCGTCCCCGTGCTCCGCGACGGCCCGTCCAGGAGCCGCTACAGGGCGTTCTTCTACTGCAACGCCACGTCGTTCGTGGCGTCGCTCGCCATCGTCATGCTGCTGATGAGCCGCACGCTGAGCCGCCGCGTCGCCCGGTCGTACGCGCTGCAGGTGTGCGTGA
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| Protein seq | MESEDYIFLWKWRKYLLLLATLVAGVTYDAGLNPPGGVWPDDTGGHATGDPVLPVTFHSRYLAFFYCNATAFVASLVVIMMLLDRRVSGNRVGVTVLRSAMVLDLFALMGAYAAGVSRDVLAVAYVSALFGLVFAYVALHIVVATSALPPVEWLRASAKRLAGKAEELLRKGDDEEAASASASMTTRRVEEDRQERRKFLLLLATFATPLTYAAGFDPPGGFWDSTGGGHTAGVPVLRDGPSRSRYRAFFYCNATSFVASLAIVMLLMSRTLSRRVARSYALQVCV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0293000 | OsNip_06t0293000-00 | Chr06 | 10756337 | 10757232 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGTCGGAGGACTACATTTTCCTGTGGAAATGGCGCAAGTACCTCCTGCTGCTGGCCACGCTGGTGGCCGGCGTCACCTACGACGCCGGCCTCAACCCTCCCGGCGGCGTGTGGCCCGACGACACGGGTGGCCACGCCACCGGCGACCCGGTGCTCCCGGTGACGTTCCACAGCCGCTACCTCGCCTTCTTCTACTGCAACGCCACCGCCTTCGTCGCGTCGCTCGTCGTCATCATGATGCTGCTCGACCGCCGCGTCAGCGGCAACCGCGTCGGCGTCACCGTGCTCCGCTCCGCCATGGTGCTCGACCTGTTCGCGCTCATGGGCGCCTACGCCGCCGGGGTCAGCAGGGACGTGCTCGCCGTCGCCTACGTCTCGGCGCTGTTCGGCCTGGTGTTCGCGTACGTCGCGCTGCACATCGTCGTGGCCACGTCGGCGCTGCCGCCGGTGGAGTGGCTGCGCGCGTCGGCGAAGAGGCTCGCCGGCAAGGCGGAGGAGCTGCTCAGGAAGGGCGACGACGAGGAGGCAGCGTCGGCGTCGGCGTCGATGACGACGCGGCGCGTCGAGGAGGACCGGCAGGAGCGGCGCAAGTTCCTGCTGCTGCTGGCCACGTTCGCGACGCCGCTGACGTACGCCGCCGGGTTCGATCCGCCGGGCGGCTTCTGGGACAGCACCGGCGGCGGCCACACCGCCGGCGTCCCCGTGCTCCGCGACGGCCCGTCCAGGAGCCGCTACAGGGCGTTCTTCTACTGCAACGCCACGTCGTTCGTGGCGTCGCTCGCCATCGTCATGCTGCTGATGAGCCGCACGCTGAGCCGCCGCGTCGCCCGGTCGTACGCGCTGCAGGTGTGCGTGA
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| Protein seq | MESEDYIFLWKWRKYLLLLATLVAGVTYDAGLNPPGGVWPDDTGGHATGDPVLPVTFHSRYLAFFYCNATAFVASLVVIMMLLDRRVSGNRVGVTVLRSAMVLDLFALMGAYAAGVSRDVLAVAYVSALFGLVFAYVALHIVVATSALPPVEWLRASAKRLAGKAEELLRKGDDEEAASASASMTTRRVEEDRQERRKFLLLLATFATPLTYAAGFDPPGGFWDSTGGGHTAGVPVLRDGPSRSRYRAFFYCNATSFVASLAIVMLLMSRTLSRRVARSYALQVCV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.272482 | 0.558874 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0144900 | SBH | 0.0 | 0.300726 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g18930 | SBH | 0.173064 | 0.226711 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0293000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012220 | SBH | 0.036248 | 0.500697 | 0.212350 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011870 | RBH | 0.156056 | 1.828920 | 1.609057 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011940 | SBH | 0.194275 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0011990 | RBH | 0.024286 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012060 | RBH | 0.357709 | 4.364165 | 0.736003 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0176900 | RBH | 4.1231745 | 0.305001 | 0.0181225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011560 | RBH | 0.063366 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0172000 | SBH | 0.409746 | 0.1422295 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012140 | RBH | 0.098548 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011970 | RBH | 0.065447 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012190 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011880 | RBH | 0.694646 | 1.647784 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011760 | SBH | 0.158342 | 0.561815 | 0.361347 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012250 | RBH | 0.0 | 0.0 | 0.618128 |
