Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_06g0011940 | OGI:06028900 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr06:10391550-10395348 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaccacatgttcactattgtatagttcattgagctgtgagctcccatggagtcggaggactacattttcctgtggaaatggcgcaagtacttcctgctgctggccacgctggtggccggcgtcacctacgacgccggcctcaaccctcccggcggcgtgtggcccgacgacacgggtggccacgccaccggcgacccggtgctcccggtgacgttccacagccgctacctcgccttcttctactgcaacgccaccgccttcgtcgcgtcgctcgtcgtcatcatgatgctgctcgaccgccgcgtcagcggcaaccgcgtcggcgtcaccgtgctccgctccgccatggtgctcgacctgttcgcgctcatgggcgcctacgccgccggggtcagcagggacgtgctcgccgtcgcctacgtctcggcgctgttcggcctggtgttcgcgtacgtcgcgctgcacatcgtcgtggccacgtcggcgctgccgccggtggagtggctgcgcgcgtcggcgaagaggctcgccggcaaggcggaggagctgctcaggaagggcgacgacgaggaggcagcgtcggcgtcggcgtcgatgacgacgcggcgcgtcgaggaggaccggcaggagcggcgcaagttcctgctgctgctggccacgttcgcgacgccgctgacgtacgccgccgggttcgatccgccgggcggcttctgggacagcaccggcggcggccacaccgccggcgtccccgtgctccgcgacggcccgtccaggagccgctacagggcgttcttctactgcaacgccacgtcgttcgtggcgtcgctcgccatcgtcatgctgctgatgagccgcacgctgagccgccgcgtcgcccggtcgtacgcgctgcaggtgtgcgtgatggtggagctgcttggcctcgtgggcgcctacgccgccggcagcaacaggaagcgcgagaccaccgcctacgtcgtctccctcgccggcgcggtgctcgtctacatcgcgctccaggtggtcgtcgggatgttcgccatggccgcgatcaagagatggctcgtcggcctctgcaggatcctgcagtgccgacgcagcatggagccagctgaacacctgcgcgctgatgacgtcacgcatgatcatcgcgtccaatacttgtaagctgacaagtagacagttatgaattttttttaaaaaaataacaagataaattaatatgtaatatatatcattacacaagcatgcaagatgaaaattgacttctacgtccccgcaaaaaaaaaatgacttctaagttataacagaattgacggagatagattctaatagctcgagtggacgtccacctatttattgcatgtcaattaaatgattatgaaaaaaatttcaaaaaaaattgacaagatagatcaatatgtaatatatattatttcacaaacatgcaagttcaaattttaacttctacaagttgtaacaaaaataacaaatttaattgtaaatatacgcatagtaatttgatttttgtttgttattttgttataatttgtagaagttgaatttttaacttgtatgtttgtggattgatatattatatattgatatatcttgttcatattttttcaatttttttcatagttatttagatgatatgcagtaaacaagtagacgtccactcaagttgttaaaacagttttccccaaaattgattgtaaatatacatatactagttatagctagtttaatttattacttttgttataacttataaatatcgaatttgaacttaaatgtttgtggagtaatataggagtacatattaatctgttttgttatttttttaaaattatttcacaaccatttagattagaatccctctcgacctgacgtgatgctatgtactgtatgtcacttgagtagggagatgaagccgtgcccagcaactccgaacaacacgccatgcgaagttcgtgctccggatggcgatgtcaccggaggaggaggaggcgatggcgatgaaggcgacgcggacacggtggaagagtcacggtcgctgctgctgctgctcgccacgctggcggcgacggtgacctacgacgccgggctcaacccgccgggtggcttctggccggacggcggccgcgccggcgagctgatcctcctcgacacgcacccgaggaggtacaaggcgttcttccactgcaacacggcggcgttcgtggcgtcgctggtggtgatcgtcatcgtgcagagcaggcagctgagctcgggcgccgtcgtgaagcgccgcgcgctgcaggcggccatgacgctcgacctgctggggctcatgggcgcgtacgccgccgggagctgccggagcgcggcggcgaccgtctacgtctccgccctggccgtcgccgtcttcgtctactccctcggcaacgtcgtggcgttcaccaccatggggcggagcagggagacgaggctgatgcggtgggtggacgggatggtccagaaggttctagagaggctgcacctctgggacggccaggccgaggaagccgacgacgacctggagaggaagcgcaagttcttgctgcagctcgccatcctcgccgccaccgtgacgtacaagacagggctgaacccgccgggcgggttctggtcgggctccgacgacggccgcgccggcgacccggtcctcgtcgaccactaccggaaccggtacatggtgttcttctactgcaacgcgacggggttcatggcgtccgtcgccgtcatcctcatgctcgtcaaccggcggctgtacaagcagggcatccggtgcaacgcgctcaacgcctgcgtcgtggtcggcctgctcggcctcatgctcgcctacgccgccggcagctgccggaggctccgcacgtccgcctacgtcatcgcgctcgtcgccgccgtggtcggcttcctcctcctccagatcctcctgttcctgctcgcgaagcgcgtcgtgccggcgacgctggaacatcggctgccgccgtggctgctggcgctgttcgagccgctgacgccgccgcctcggaaggcggcggcggcggccggcggcgaagacgacaagcagcaggactccggggagcggcacacggagcagtacatgaagcgcaagtacctgatgctgctcggcgtcctcgccgcgagcgtgacgtaccaggcgggcctctcgccgccgggcggcacgtggggcggcgacggcgccatggtggccggcggctccgcgacgtaccactacgccgcgggcgacccggtgctgcacgacaccgaccgggcgaggtaccacgccttcttccactgcaacgcgacgtcgttcgtggcgtccgtggtggtgatcgttctgctgctgctgcggcggcggcggcggcgcggcgcgccggcggcgccgctgtgggcgatgcagtcggcggtggtgctggacctgctcggcctcctcggcgcctacgccgcggggagctgcagggagtgggagacgtcggcgtacgtggtggcgctcgtcggcgccgtcgtggtgtacatcgcgctgcacgtgctgctgtccttcgacgccgtggcggccaaggccgagaggctcaaggtctggagatacttcggcgagagctccgataataataatcagaccggcggtggcgctgcggtgtagtagtgaacgatgtaatggtctctgaatttctcgtcctgattgatcttcaattgtatagtggctgattgttgttggtgattgctgacgtatgtgtttgttataaacttgtaatggatgattggattgttgtac
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| CDS seq | atggagtcggaggactacattttcctgtggaaatggcgcaagtacttcctgctgctggccacgctggtggccggcgtcacctacgacgccggcctcaaccctcccggcggcgtgtggcccgacgacacgggtggccacgccaccggcgacccggtgctcccggtgacgttccacagccgctacctcgccttcttctactgcaacgccaccgccttcgtcgcgtcgctcgtcgtcatcatgatgctgctcgaccgccgcgtcagcggcaaccgcgtcggcgtcaccgtgctccgctccgccatggtgctcgacctgttcgcgctcatgggcgcctacgccgccggggtcagcagggacgtgctcgccgtcgcctacgtctcggcgctgttcggcctggtgttcgcgtacgtcgcgctgcacatcgtcgtggccacgtcggcgctgccgccggtggagtggctgcgcgcgtcggcgaagaggctcgccggcaaggcggaggagctgctcaggaagggcgacgacgaggaggcagcgtcggcgtcggcgtcgatgacgacgcggcgcgtcgaggaggaccggcaggagcggcgcaagttcctgctgctgctggccacgttcgcgacgccgctgacgtacgccgccgggttcgatccgccgggcggcttctgggacagcaccggcggcggccacaccgccggcgtccccgtgctccgcgacggcccgtccaggagccgctacagggcgttcttctactgcaacgccacgtcgttcgtggcgtcgctcgccatcgtcatgctgctgatgagccgcacgctgagccgccgcgtcgcccggtcgtacgcgctgcaggtgtgcgtgatggtggagctgcttggcctcgtgggcgcctacgccgccggcagcaacaggaagcgcgagaccaccgcctacgtcgtctccctcgccggcgcggtgctcgtctacatcgcgctccaggtggtcgtcgggatgttcgccatggccgcgatcaagagatggctcgtcggcctctgcaggatcctgcaggagatgaagccgtgcccagcaactccgaacaacacgccatgcgaagttcgtgctccggatggcgatgtcaccggaggaggaggaggcgatggcgatgaaggcgacgcggacacggtggaagagtcacggtcgctgctgctgctgctcgccacgctggcggcgacggtgacctacgacgccgggctcaacccgccgggtggcttctggccggacggcggccgcgccggcgagctgatcctcctcgacacgcacccgaggaggtacaaggcgttcttccactgcaacacggcggcgttcgtggcgtcgctggtggtgatcgtcatcgtgcagagcaggcagctgagctcgggcgccgtcgtgaagcgccgcgcgctgcaggcggccatgacgctcgacctgctggggctcatgggcgcgtacgccgccgggagctgccggagcgcggcggcgaccgtctacgtctccgccctggccgtcgccgtcttcgtctactccctcggcaacgtcgtggcgttcaccaccatggggcggagcagggagacgaggctgatgcggtgggtggacgggatggtccagaaggttctagagaggctgcacctctgggacggccaggccgaggaagccgacgacgacctggagaggaagcgcaagttcttgctgcagctcgccatcctcgccgccaccgtgacgtacaagacagggctgaacccgccgggcgggttctggtcgggctccgacgacggccgcgccggcgacccggtcctcgtcgaccactaccggaaccggtacatggtgttcttctactgcaacgcgacggggttcatggcgtccgtcgccgtcatcctcatgctcgtcaaccggcggctgtacaagcagggcatccggtgcaacgcgctcaacgcctgcgtcgtggtcggcctgctcggcctcatgctcgcctacgccgccggcagctgccggaggctccgcacgtccgcctacgtcatcgcgctcgtcgccgccgtggtcggcttcctcctcctccagatcctcctgttcctgctcgcgaagcgcgtcgtgccggcgacgctggaacatcggctgccgccgtggctgctggcgctgttcgagccgctgacgccgccgcctcggaaggcggcggcggcggccggcggcgaagacgacaagcagcaggactccggggagcggcacacggagcagtacatgaagcgcaagtacctgatgctgctcggcgtcctcgccgcgagcgtgacgtaccaggcgggcctctcgccgccgggcggcacgtggggcggcgacggcgccatggtggccggcggctccgcgacgtaccactacgccgcgggcgacccggtgctgcacgacaccgaccgggcgaggtaccacgccttcttccactgcaacgcgacgtcgttcgtggcgtccgtggtggtgatcgttctgctgctgctgcggcggcggcggcggcgcggcgcgccggcggcgccgctgtgggcgatgcagtcggcggtggtgctggacctgctcggcctcctcggcgcctacgccgcggggagctgcagggagtgggagacgtcggcgtacgtggtggcgctcgtcggcgccgtcgtggtgtacatcgcgctgcacgtgctgctgtccttcgacgccgtggcggccaaggccgagaggctcaaggtctggagatacttcggcgagagctccgataataataatcagaccggcggtggcgctgcggtgtag
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| Protein seq | MESEDYIFLWKWRKYFLLLATLVAGVTYDAGLNPPGGVWPDDTGGHATGDPVLPVTFHSRYLAFFYCNATAFVASLVVIMMLLDRRVSGNRVGVTVLRSAMVLDLFALMGAYAAGVSRDVLAVAYVSALFGLVFAYVALHIVVATSALPPVEWLRASAKRLAGKAEELLRKGDDEEAASASASMTTRRVEEDRQERRKFLLLLATFATPLTYAAGFDPPGGFWDSTGGGHTAGVPVLRDGPSRSRYRAFFYCNATSFVASLAIVMLLMSRTLSRRVARSYALQVCVMVELLGLVGAYAAGSNRKRETTAYVVSLAGAVLVYIALQVVVGMFAMAAIKRWLVGLCRILQEMKPCPATPNNTPCEVRAPDGDVTGGGGGDGDEGDADTVEESRSLLLLLATLAATVTYDAGLNPPGGFWPDGGRAGELILLDTHPRRYKAFFHCNTAAFVASLVVIVIVQSRQLSSGAVVKRRALQAAMTLDLLGLMGAYAAGSCRSAAATVYVSALAVAVFVYSLGNVVAFTTMGRSRETRLMRWVDGMVQKVLERLHLWDGQAEEADDDLERKRKFLLQLAILAATVTYKTGLNPPGGFWSGSDDGRAGDPVLVDHYRNRYMVFFYCNATGFMASVAVILMLVNRRLYKQGIRCNALNACVVVGLLGLMLAYAAGSCRRLRTSAYVIALVAAVVGFLLLQILLFLLAKRVVPATLEHRLPPWLLALFEPLTPPPRKAAAAAGGEDDKQQDSGERHTEQYMKRKYLMLLGVLAASVTYQAGLSPPGGTWGGDGAMVAGGSATYHYAAGDPVLHDTDRARYHAFFHCNATSFVASVVVIVLLLLRRRRRRGAPAAPLWAMQSAVVLDLLGLLGAYAAGSCREWETSAYVVALVGAVVVYIALHVLLSFDAVAAKAERLKVWRYFGESSDNNNQTGGGAAV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0011940 | OsCMeo_06g0011940.01 | Chr06 | 10391595 | 10395216 | + | NAM | ||
| CDS seq | atggagtcggaggactacattttcctgtggaaatggcgcaagtacttcctgctgctggccacgctggtggccggcgtcacctacgacgccggcctcaaccctcccggcggcgtgtggcccgacgacacgggtggccacgccaccggcgacccggtgctcccggtgacgttccacagccgctacctcgccttcttctactgcaacgccaccgccttcgtcgcgtcgctcgtcgtcatcatgatgctgctcgaccgccgcgtcagcggcaaccgcgtcggcgtcaccgtgctccgctccgccatggtgctcgacctgttcgcgctcatgggcgcctacgccgccggggtcagcagggacgtgctcgccgtcgcctacgtctcggcgctgttcggcctggtgttcgcgtacgtcgcgctgcacatcgtcgtggccacgtcggcgctgccgccggtggagtggctgcgcgcgtcggcgaagaggctcgccggcaaggcggaggagctgctcaggaagggcgacgacgaggaggcagcgtcggcgtcggcgtcgatgacgacgcggcgcgtcgaggaggaccggcaggagcggcgcaagttcctgctgctgctggccacgttcgcgacgccgctgacgtacgccgccgggttcgatccgccgggcggcttctgggacagcaccggcggcggccacaccgccggcgtccccgtgctccgcgacggcccgtccaggagccgctacagggcgttcttctactgcaacgccacgtcgttcgtggcgtcgctcgccatcgtcatgctgctgatgagccgcacgctgagccgccgcgtcgcccggtcgtacgcgctgcaggtgtgcgtgatggtggagctgcttggcctcgtgggcgcctacgccgccggcagcaacaggaagcgcgagaccaccgcctacgtcgtctccctcgccggcgcggtgctcgtctacatcgcgctccaggtggtcgtcgggatgttcgccatggccgcgatcaagagatggctcgtcggcctctgcaggatcctgcaggagatgaagccgtgcccagcaactccgaacaacacgccatgcgaagttcgtgctccggatggcgatgtcaccggaggaggaggaggcgatggcgatgaaggcgacgcggacacggtggaagagtcacggtcgctgctgctgctgctcgccacgctggcggcgacggtgacctacgacgccgggctcaacccgccgggtggcttctggccggacggcggccgcgccggcgagctgatcctcctcgacacgcacccgaggaggtacaaggcgttcttccactgcaacacggcggcgttcgtggcgtcgctggtggtgatcgtcatcgtgcagagcaggcagctgagctcgggcgccgtcgtgaagcgccgcgcgctgcaggcggccatgacgctcgacctgctggggctcatgggcgcgtacgccgccgggagctgccggagcgcggcggcgaccgtctacgtctccgccctggccgtcgccgtcttcgtctactccctcggcaacgtcgtggcgttcaccaccatggggcggagcagggagacgaggctgatgcggtgggtggacgggatggtccagaaggttctagagaggctgcacctctgggacggccaggccgaggaagccgacgacgacctggagaggaagcgcaagttcttgctgcagctcgccatcctcgccgccaccgtgacgtacaagacagggctgaacccgccgggcgggttctggtcgggctccgacgacggccgcgccggcgacccggtcctcgtcgaccactaccggaaccggtacatggtgttcttctactgcaacgcgacggggttcatggcgtccgtcgccgtcatcctcatgctcgtcaaccggcggctgtacaagcagggcatccggtgcaacgcgctcaacgcctgcgtcgtggtcggcctgctcggcctcatgctcgcctacgccgccggcagctgccggaggctccgcacgtccgcctacgtcatcgcgctcgtcgccgccgtggtcggcttcctcctcctccagatcctcctgttcctgctcgcgaagcgcgtcgtgccggcgacgctggaacatcggctgccgccgtggctgctggcgctgttcgagccgctgacgccgccgcctcggaaggcggcggcggcggccggcggcgaagacgacaagcagcaggactccggggagcggcacacggagcagtacatgaagcgcaagtacctgatgctgctcggcgtcctcgccgcgagcgtgacgtaccaggcgggcctctcgccgccgggcggcacgtggggcggcgacggcgccatggtggccggcggctccgcgacgtaccactacgccgcgggcgacccggtgctgcacgacaccgaccgggcgaggtaccacgccttcttccactgcaacgcgacgtcgttcgtggcgtccgtggtggtgatcgttctgctgctgctgcggcggcggcggcggcgcggcgcgccggcggcgccgctgtgggcgatgcagtcggcggtggtgctggacctgctcggcctcctcggcgcctacgccgcggggagctgcagggagtgggagacgtcggcgtacgtggtggcgctcgtcggcgccgtcgtggtgtacatcgcgctgcacgtgctgctgtccttcgacgccgtggcggccaaggccgagaggctcaaggtctggagatacttcggcgagagctccgataataataatcagaccggcggtggcgctgcggtgtag
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| Protein seq | MESEDYIFLWKWRKYFLLLATLVAGVTYDAGLNPPGGVWPDDTGGHATGDPVLPVTFHSRYLAFFYCNATAFVASLVVIMMLLDRRVSGNRVGVTVLRSAMVLDLFALMGAYAAGVSRDVLAVAYVSALFGLVFAYVALHIVVATSALPPVEWLRASAKRLAGKAEELLRKGDDEEAASASASMTTRRVEEDRQERRKFLLLLATFATPLTYAAGFDPPGGFWDSTGGGHTAGVPVLRDGPSRSRYRAFFYCNATSFVASLAIVMLLMSRTLSRRVARSYALQVCVMVELLGLVGAYAAGSNRKRETTAYVVSLAGAVLVYIALQVVVGMFAMAAIKRWLVGLCRILQEMKPCPATPNNTPCEVRAPDGDVTGGGGGDGDEGDADTVEESRSLLLLLATLAATVTYDAGLNPPGGFWPDGGRAGELILLDTHPRRYKAFFHCNTAAFVASLVVIVIVQSRQLSSGAVVKRRALQAAMTLDLLGLMGAYAAGSCRSAAATVYVSALAVAVFVYSLGNVVAFTTMGRSRETRLMRWVDGMVQKVLERLHLWDGQAEEADDDLERKRKFLLQLAILAATVTYKTGLNPPGGFWSGSDDGRAGDPVLVDHYRNRYMVFFYCNATGFMASVAVILMLVNRRLYKQGIRCNALNACVVVGLLGLMLAYAAGSCRRLRTSAYVIALVAAVVGFLLLQILLFLLAKRVVPATLEHRLPPWLLALFEPLTPPPRKAAAAAGGEDDKQQDSGERHTEQYMKRKYLMLLGVLAASVTYQAGLSPPGGTWGGDGAMVAGGSATYHYAAGDPVLHDTDRARYHAFFHCNATSFVASVVVIVLLLLRRRRRRGAPAAPLWAMQSAVVLDLLGLLGAYAAGSCREWETSAYVVALVGAVVVYIALHVLLSFDAVAAKAERLKVWRYFGESSDNNNQTGGGAAV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_06g0011940 | OsCMeo_06g0011940.02 | Chr06 | 10391550 | 10395348 | + | IsoSeq | ||
| CDS seq | accacatgttcactattgtatagttcattgagctgtgagctcccatggagtcggaggactacattttcctgtggaaatggcgcaagtacttcctgctgctggccacgctggtggccggcgtcacctacgacgccggcctcaaccctcccggcggcgtgtggcccgacgacacgggtggccacgccaccggcgacccggtgctcc
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| Protein seq | TTCSLLYSSLSCELPWSRRTTFSCGNGASTSCCWPRWWPASPTTPASTLPAACGPTTRVATPPATRCS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr06 | 10392637 | 10393473 | + | OsCMeo_06g0011940.02 | OsCMeo_06g0011940.02,OsCMeo_06g0011940.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.194275 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0293100 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g18930 | RBH | 0.173064 | 0.226711 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0293100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012030 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011900 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0011960 | SBH | 0.357941 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0011990 | RBH | 0.024286 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012100 | RBH | 0.000000 | 0.0 | 0.405725 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0176000 | RBH | 0.317144 | 0.1497045 | 0.004247 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011560 | RBH | 0.063366 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0172000 | RBH | 0.409746 | 0.1422295 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012120 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011970 | RBH | 0.065447 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012190 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011740 | RBH | 0.080338 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012080 | RBH | 0.000000 | 0.0 | 0.0 |
