Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0112200 | OGI:06001620 | 2/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:692774-695655 | ||||||||
| Gene Symbol | MTN, OsMTN | ||||||||||
| DNA seq | ACCGCCTCTCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGGTACTCTCAATCCTCATCCCCTCCTGCGCTTCTGCTTCTTGTTGCTAATCCCGTTGCTGTTGTTTGGTTGGTTTGGCTTCAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATGTTAGTAGTGTTCTCCCGTTTCTCCCCCCTTGTTCCTCTTCACCAACCATTTCCTATCCTTCCATGCCATGCTGCACTTACTGCTGTTGGGTGGTTATAAGTTAAATCCCTGGAATTAGGATTTTTTTTAAAAAAAAAGAAAAGAAAAAAGAACAAGTTATTTTTGTGGATGGTGATGTTCTGCTTTACTAGGCAAGTTTAGTGGCAACCTTCGTTTAATCTGTCTCATGAAAATGTCAATGTCAGCTGTCCTCGAAACTTTTGGAAATAATTATATCCAACTTACAGGGATAGTCTGATACGATCCGTTTTCACTATTCCTGTTCCTGTGTCCTTCATACATAAATTAAGCTTTAACCTTGTGTCATCACCCTGTTTTGCTCATATAACCTGTCCGATACTCTCAGCTCTGAAGCTAACTCCTACCTTTGTGGCACACGCCTAACAGATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGTAAGTTGTCATCTATAATATGCTGCTCACCAGCTTGTTGTCAAGAATCAAGCAATAATTTGATAGGTTTCTTCATCATGTAATTCTTACAATTTATCCACAAACTAACCTTATTTCTTTCAGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTTAAGGTAATGTTTCAAGATATCACATGTTTGATGCCATGCTGTCGTTTTATTGTACCTGGGTTCTGATGTTGTTTCCCTTCTGGTCTTTCAGGCCAAAGGAGCAGACATTGGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTGAGTGTTCTGTTATGTCTTGTAGTATTTTTTTTTGTGGACCTAGTCCCATTTTTCTGCAGTGTGACCTTATTCAGTTCATTGATGTGCTACATTATTAGAATTCAGAAAGTCATACATGTCTTGAACAAAACATTGCTAGTTTTTATCTGTTTATTTCATAATCCAGTCCGTTTCATGGTTTTCTAATTCTACCTTCCTGCACCGTGACAACTAATTATTTATAAACTTATAGTCTGCTTTACTCACTTGTGCTTCTGGTGACATCTGCTCCTTTGCCATTTATTCTCAAGATATTATATTTGCATCGCCATATTTTCTACAAGTTCTTTTTAGATAATCTATACACGTTTAATTGAGATGTTGACATGGACCTTCTTGGCTTATCCACAGGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTAAGCTACAGAGCTATGCTAGTTGATGCCAAACTGCTGGAATGAATACTGTGTGAGTCGTGCTTACATGCATATATCTTACTGTCTCCTTTAGCATGGTGTTGTTTCTGAAACGAATTTGTGGATTTTATTGGTAAACTGTAGCACTGTATAGACTCAACAAGATGAGTCGATCACATGCTAGTGTTCAACATTCCGGAAGTCATTGTGCCTTATTTGCTTCAGGTTGGGAAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGTATCTATTTACTTCTGCTCAAGCATTCAGCTTAAGAACATAGGCACACAACAGGGAAATGGAGGTCTTCAACCATAGGTTCCTCTTGGAAGTTGGAATGAGTTCATCCTTTATGAACTTTAGGACAACTTTTACACATCTTGCATTTTGTGGGTCGTTATGGCATTGAAGTAGGCAAATGTCTATAGGAATATATTTTTATCCAACTAATTATTTGCTGATCTCTTCAGTTTTTTTGTTAATGCCTGAGTTCAAGTTAAATCGACTAGCATGAATAAGATACTTTGTGTGCACTGGTATTCATACGAAGTTATCTGCTGCTCTGCTTTGTTTTCAGTTGTAATTTGTAGGCTCAAACTGGCTTCGTTATTCTTGTTTTTCCAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGAACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAATGCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCTGCAAAATGTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTT
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| CDS seq | ATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTTAAGGCCAAAGGAGCAGACATTGGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGGAAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGAACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGA
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| Protein seq | MAPPSDSDDSAPIPAGAISKLLIVIAMQTEALPLVNKFHLVEAEESIFPKGAPWIRYHGNYKGLHVDLVWPGKDPVLGVDCVGTVSAALVTYASIQSLKPDLIINAGTAGGFKAKGADIGDVYLASDVAFHDRRIPIPVFDMYGIGTRKTFATPNILKELNLKVGKLSTGDSLDMSPHDESAILNNDATVKDMEGAAVAYVADMFSTPAIFVKAVTDIVDGEKPTAEEFLQNLVAVTAALDKAVTEVVDFISGKCISDL |
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| Function | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [UniProtKB/Swiss-Prot:Q7XA67] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0112200 | OsNip_06t0112200-01 | Chr06 | 692774 | 695655 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTTAAGGCCAAAGGAGCAGACATTGGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGGAAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGAACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGA
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| Protein seq | MAPPSDSDDSAPIPAGAISKLLIVIAMQTEALPLVNKFHLVEAEESIFPKGAPWIRYHGNYKGLHVDLVWPGKDPVLGVDCVGTVSAALVTYASIQSLKPDLIINAGTAGGFKAKGADIGDVYLASDVAFHDRRIPIPVFDMYGIGTRKTFATPNILKELNLKVGKLSTGDSLDMSPHDESAILNNDATVKDMEGAAVAYVADMFSTPAIFVKAVTDIVDGEKPTAEEFLQNLVAVTAALDKAVTEVVDFISGKCISDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.422867 | 4.206799 | 8.278240 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02220 | RBH | 2.978087 | 2.567899 | 1.934013 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0112200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0000870 | SBH | 0.715803 | 48.637211 | 6.203232 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0000870 | SBH | 0.397213 | 28.201725 | 2.937760 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000840 | SBH | 0.000000 | 45.459435 | 7.899036 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0000840 | SBH | 0.217756 | 0.471615 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000830 | SBH | 2.676073 | 38.856663 | 11.276327 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0010000 | SBH | 6.967654 | 23.045231 | 5.352061 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000800 | SBH | 0.371618 | 1.963022 | 0.647529 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0010700 | RBH | 12.9459445 | 14.325418 | 30.8163965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000830 | SBH | 0.204744 | 0.448945 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000830 | SBH | 0.450093 | 12.401201 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000850 | SBH | 1.572583 | 38.803329 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000830 | SBH | 0.000000 | 0.744729 | 0.138834 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000790 | SBH | 0.321957 | 16.337120 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000830 | SBH | 0.193211 | 11.010090 | 3.914544 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000820 | SBH | 0.830929 | 33.549187 | 12.317363 |
