Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0501400 | OGI:05066960 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:24676770-24682608 | ||||||||
| Gene Symbol | SDRLK-4 | ||||||||||
| DNA seq | CAGCGAACGCGTCACTCGCGCGCACCGCGACGAATCGACCATATGGCCATCCATCAGCTCAGCTTCGTGCTCCTCCTCATGCTGCTCGCGCCGGCGACGTCGCGTGCCCGCGACAGCATCGCGCCGGGCGAGCCGCTCGCGGGCCACGACACGCTCGTCTCTGCCGGCGCCGGCGACGGCGGCGGCTTCGCGCTCGGGTTCTTCACCCCGCCGGGATCCAACGACACCTACGTCGGGGTGTGGTACGCGCGGGTGTCCCCCCGCACCGTCGTCTGGGTCGCCAACCGCGCCGACCCCGTCCCGGGCCCCGTCGACGGCAACGCCGGCGCCACGTTGTCCGTGTCCCGCGCCTGCGAGCTCGCCGTCGCCGACGCCAACTCCACCGTCGTGTGGTCGGTCACGCCGGCGACGACAGGGCCCTGCACGGCGAGGATACGGGACGACGGCAACCTGGTCGTCACCGACGAGCGCGGCCGGGTGGCGTGGCAGGGGTTCGACCACCCCACCGACACGCTGCTCCCCGGGATGAGGATTGGGGTGGACTTCGCCGCCGGCAACAACATGACGCTGACGGCGTGGAAGAGCCCCTCCGACCCGTCGCCGAGCTCTGTGGTCGTGGCCATGGACACCTCCGGCGATCCGGAGGTGTTCCTCTGGAACGGGCCGAACAAGGTGTGGCGCTCCGGCCCCTGGGACGGCATGCAGTTCACCGGCGTCCCGGACACCATCACCTACAAGAACTTCAGCTTCAGCTTCGTGAACAGCGCCCGGGAGGTCACCTACAGCTTCCAGGTGCCCGACGCGAGCATCATGTCGCGGCTGGTGCTGAACAGCAGCGGCGGCGGGCTGGTGCAGCGGTGGACGTGGGTGGAGGCGGCGGGGGCGTGGAACCTGTACTGGTACGCGCCCAAGGACCAGTGCGACGCCGTGTCGCCGTGCGGCGCCAACGGGGTGTGCGACACCAACAGCCTCCCCGTGTGCTCCTGCCTCCGCGGGTTCGCGCCGCGGTCGCCGGCGGCGTGGGCGCTGCGGGACGGCCGCGACGGGTGCGCGCGGGAGACGCCGCTCGGTTGCGCCAACGGCACCGACGGGTTCGCCGTGGTGCGGCACGCCAAGGCGCCCGACACGACCGCCGCGACGGTGGACTACGACGCCGGCCTCCAGCTGTGCCGGCGGAGGTGCCTGGGCAACTGCTCGTGCACGGCGTACGCCAACGCCAACCTCAGCGCGCCGCCCGGGCGCCGCGGCTGCGTCATGTGGACCGGCGAGCTGGAAGACCTTCGAGTGTACCCGGCCTTCGGCCAGGACCTCTACGTCCGCCTCGCCGCCGCCGATCTCGGTATGTTTCACTTCACCGTCTGATACAGTTGTTTTTCTGGTCCTTCCTGCAATTATTTCTCGATCCATGATTGCACACTGGTTAGTGAGTTTTTTTTTTTTGGTGATGTCATAGGACGTTTTACCTCATGAGATGTTTAAAGTTACTCCTAATACCATAGGAATAGTTACACAAATTATGACAAACTATAACAAAAACGGGTATAATCTGAATTTATTATCCGACATGTTTCAAGTTTAAAATTTTAACCCGAACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGACTAGGTACACAATGCAGTATGCACTAATCACAAGTGAATTAGTCCTTTTTTCCCCACGCCATGTAGATTGAGTTTAGCTATGAATTTCCTTTTTGCCATTTAGTATCTGTAGATTACTACTAGATTGTCATGATCAAAGTAGCAAAGGAACCAAGGTAGACCGCTTTTTATTGCGGAAAAGCAGTCAGATGTATGCATTCATATGTTTCTAAGTCAGTACTAGTTCAGTCAGTGAGAGGGCACTATTTCTTCTGCTCAAGTTAGCTGTGAACTTTACTGTAGCATTCAAGTCGAACTTGCTTCACGTAACTTGTTTTTAAAAAAAATAAAGAAAAAGAAAACTACTTCATGGATAAACTGGACCTTACCTAACCTGTGCCTTTGTAGCCTGTAAGTCCCATCTCCACGAAGTAGAAAACATTCCTGTATTGTGCCTTTCAGTTTCAGATGCTCTGCCGGTCTGCCCAACCCACATACTCCTATGATCCTATCCCTCTATTTATCTGATGCTGTACTGCAATCCAATGAAAGCGAGATTAGAAAAAAAAAGGTTACCTGACAATGTATGAATAGATTCATTTCCAAGTAACCCCAGAATTATTGGGAAGACTTTTTGTGCCCGTCCAATCATTCATCCACAGTTCATAGCTGTTATAGCTGCACATGATAAACCGGTACCTTACCCGGCAACTTAGCGTGTTTCACTTCGCTTCGGCCCTGCTTCTGCATAGCTCCAGTCCTAATCTTATCTGCCTGACGGCACTGCTAAGCAAAATGGACACGACTGTTTTCTTCCCTTACCTGAGACATGAACACGTTATTTTCGTGTTGCATCAGTACAAGTCGCCATCGCTGATAAGTAAGGTCCATGTTACCATCTAGTCCAAATTTTAGCCTGCAGACAGAATCACAGAATAGAATGAGTAATACTACGTAGTTAGCAATGACTCAGGCATGCATGAATCAATATGAGTTTATTGCATGTGTTGTGTTTTTGACATGTGGTTAATGTGCATGAGCCATGAGGTCCAACCCTACGATGTTGCATCCACAAAATTCAACTGGAAGCCTGGAAGCGACCAAAAAGTTTGTTAGTTTCACATGTTAGGTGGTCAAAATGAATATGCGTTACATTGGTAAATGGGAAAACATACCAATTTGCCTTCTAATGGAGCTCAGCAGATGATGTTAGATAGCCTACCTCAATAACATGAGTAAAACTTACGGAACAGTAGCACCATATCCATATATATGTTCCATTTTCAAAGGATCATCAAGCCAAAAGCAAGTAAACAAAATCAGCGTACCCTGACTTGCTGGTGCCTGGTGCCATCACAAATTTGTGTTGTCACCTTCATGGCTAGCAACACGCGACTGAACTATCTGCAGTGAATCGATGTGCACTGCAACTCCAGGCTATTGCTGATGGGGTTAAGGTGGCACCCCCTTTCCAGCACTGCAACATGATCTAAACGCTTTAAACAAGGTAAAATCCCATGTTTCCTTCATCGTCCAGATATTTTGGTTGGACAAGAGACAAGATGGAGAAATTCCATCCTCTTTACGCTGCAATATTATTGAAGGCGTGCATGGACCCTCTGCGTTGCATGTTTGTGTTCAGAGTTTCCACGGAACAGGACCACCGATGGTACCAAGGCATCCAGTTAACACAAGTTAATGTGATATGCAATAATGCAATTCATTTGGTGCATTAGAACATTATTATTCAATCTGTGGGGAGAATGTTCAGCATGAACTAGGGAGCTCCCACGAACCATCTCCTGCAAAATATCACACATCATGTTTTACATCCAGAATTTCTTCATTAGATAGCACTACAAAAGGTAGTACTAAAATGGACCAACCTAGAAAATGGATGCCTGAGTTTACCTGATGCATTTGACCATGCTTGCAGGTAGACTTCTGAAGTGAAAATCCAATATAAATTTACGATTCTAAGGCCAATGGTTTGCAATCTTTCTGATATGTTTTCTTGGCAATACTCATTATTTGGCAACCTTCTGAGTTTATACATCATCAGAAGGAATGCTCATGTACAAAAAACTAGACAAGAAAGTTGTAGGTACAGACAATCATGCAGAACTAATAGTTGTTATTCTTGCACAGATTCAACAAGCAAGTCTAAGAAGAAGACGCACATTATAATTGCAGTAGTTGTCAGCATCTGTGCGCTGGCAATTATTTTAGCCCTTACTGGGATGTACATTTGGAGAACAAAGAAGACAAAAGCAAGGCGACAAGGTAACACCTCTGATCCTAAACATATATAGACAAAAATTACCTCTTAAATCCAAATGTAAAAAAGGGGACAAAAATCGATCTTTGTTTGCTTGTGTTTCTTAACTTTGATAAATTTTCAAATAGGACCAAGTAACTGGAGTGGTGGTTTACACAGTAGAGAGCTCCACAGTGAAGGAAATAGCCATGGGGATGACCTGGATCTGCCTCTATTTGATTTGGAGACAATAGCATCAGCCACAAATGGTTTCTCAGCAGACAACAAACTTGGAGAAGGTGGCTTTGGGCCAGTATACAAGGTATGCACAGATATCTAACTAATTCATATATCAGAAGTTGATTACCATAATCAAGGTTCATCTAAGATTTCACAAACAGTTCCTTGACTCAAACACATCATGATAGCTAATGTTAGCAACGGAAGCATCGGTAAATCAAAATTTTATGTCTTGCAGGACACAAGTAATAGTTGAAATAACCAGCAAAGATGGCATTCTAACTTTTCACATACTATGAAATGTCAGTACACACCTGATTGAAAGTACTTGACTTCAAAATTACAGGGTACACTAGAGGATGGGCAAGAAATAGCAGTTAAAACACTTTCAAAGACGTCAGTACAGGGTCTTGATGAGTTCAGGAATGAGGTTATGTTGATAGCTAAACTCCAGCATCGAAATCTTGTTCAACTTATTGGCTACAGCGTTTGTGGACAAGAAAAGATGCTTCTATACGAATTTATGGAAAACAAAAGCCTGGACTGTTTCCTGTTTGGTATGCCTTTAACCTTTGTGAGCATGAAAAATTCCATATCTATCAAGGAACAAACAGAAATCTTCCTATGTTCTCAGACAAATCCAAGAGCAAGCTACTTGACTGGCAAACAAGATACCACATAATCGAGGGGATTGCCCGAGGTTTGCTGTATCTTCACCAGGACTCAAGATATAGAATCATCCACAGAGACCTGAAGACAAGCAACATTCTTCTGGATAAGGAGATGACTCCTAAAATTTCAGACTTTGGTATGGCAAGAATGTTTGGCAGTGACGACACGGAAATAAATACAGTTAGAGTGGTTGGCACATAGTAAGGACCGAATAACAAACACGTTTTAATACACAATTTATTAATCTCCTAGTGTTGACTTTGTCATTTAATCTCCTAAAATTGACTATCTTTTCATGGTTTTCTACAGCGGCTATATGGCCCCCGAGTACGCAATGGATGGAGTATTTTCAGTGAAATCAGATGTATTCAGTTTCGGCGTCATAGTGCTAGAAATCATTTCTGGTAAAAGGAACAGGGGTGTCTACAGCTACTCCAGCCACCTAAACCTTCTAGCACGTGTAAGCATGAATCTGACTCATTTACTCTACGACAATTGATGTTGATTTGATTAATTGAAACCACAACCAAGAAAATATCTCTGAACCTTTTTTTGCCGACTAAATCCTCTAAGCTTTTACCAGGCATGGAGCTCATGGAGTGAAGGGAACAGCCTCGATCTCGTCGACAAAACACTGAACGGCTCATTCAACCAAGAGGAAGTGCTAAAATGCCTCAAAGTGGGGCTCCTATGTGTCCAGGAGAACCCGGACGACCGTCCTCTCATGTCCCAGGTGCTCCTGATGCTGGCCAGCGCCGATGCCACCTCATTGCCAGATCCCAGGAAGCCTGGGTTCGTCGCAAGAAGAGCTGCAACGGAGGACACGTCGTCGAGCAGACCAGACTGCAGCTTCGTGGACAGCATGACCATCACCATGATCGAGGGCAGGTAGGAATATAGGATCGGAGTCGGAGCGCGACATTGTACTGAAGATTACTAGAACGCCTTTGCCTTTGCATTTTACTAGGTATTCTGTGTAGAATCATATATAGTCTTGTGATTGATTAACCCTAGCACTGAGTTGCGAATTCAATCCCACCCAAATAACCAGAAATCGAGATGCT
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| CDS seq | ATGGCCATCCATCAGCTCAGCTTCGTGCTCCTCCTCATGCTGCTCGCGCCGGCGACGTCGCGTGCCCGCGACAGCATCGCGCCGGGCGAGCCGCTCGCGGGCCACGACACGCTCGTCTCTGCCGGCGCCGGCGACGGCGGCGGCTTCGCGCTCGGGTTCTTCACCCCGCCGGGATCCAACGACACCTACGTCGGGGTGTGGTACGCGCGGGTGTCCCCCCGCACCGTCGTCTGGGTCGCCAACCGCGCCGACCCCGTCCCGGGCCCCGTCGACGGCAACGCCGGCGCCACGTTGTCCGTGTCCCGCGCCTGCGAGCTCGCCGTCGCCGACGCCAACTCCACCGTCGTGTGGTCGGTCACGCCGGCGACGACAGGGCCCTGCACGGCGAGGATACGGGACGACGGCAACCTGGTCGTCACCGACGAGCGCGGCCGGGTGGCGTGGCAGGGGTTCGACCACCCCACCGACACGCTGCTCCCCGGGATGAGGATTGGGGTGGACTTCGCCGCCGGCAACAACATGACGCTGACGGCGTGGAAGAGCCCCTCCGACCCGTCGCCGAGCTCTGTGGTCGTGGCCATGGACACCTCCGGCGATCCGGAGGTGTTCCTCTGGAACGGGCCGAACAAGGTGTGGCGCTCCGGCCCCTGGGACGGCATGCAGTTCACCGGCGTCCCGGACACCATCACCTACAAGAACTTCAGCTTCAGCTTCGTGAACAGCGCCCGGGAGGTCACCTACAGCTTCCAGGTGCCCGACGCGAGCATCATGTCGCGGCTGGTGCTGAACAGCAGCGGCGGCGGGCTGGTGCAGCGGTGGACGTGGGTGGAGGCGGCGGGGGCGTGGAACCTGTACTGGTACGCGCCCAAGGACCAGTGCGACGCCGTGTCGCCGTGCGGCGCCAACGGGGTGTGCGACACCAACAGCCTCCCCGTGTGCTCCTGCCTCCGCGGGTTCGCGCCGCGGTCGCCGGCGGCGTGGGCGCTGCGGGACGGCCGCGACGGGTGCGCGCGGGAGACGCCGCTCGGTTGCGCCAACGGCACCGACGGGTTCGCCGTGGTGCGGCACGCCAAGGCGCCCGACACGACCGCCGCGACGGTGGACTACGACGCCGGCCTCCAGCTGTGCCGGCGGAGGTGCCTGGGCAACTGCTCGTGCACGGCGTACGCCAACGCCAACCTCAGCGCGCCGCCCGGGCGCCGCGGCTGCGTCATGTGGACCGGCGAGCTGGAAGACCTTCGAGTGTACCCGGCCTTCGGCCAGGACCTCTACGTCCGCCTCGCCGCCGCCGATCTCGATTCAACAAGCAAGTCTAAGAAGAAGACGCACATTATAATTGCAGTAGTTGTCAGCATCTGTGCGCTGGCAATTATTTTAGCCCTTACTGGGATGTACATTTGGAGAACAAAGAAGACAAAAGCAAGGCGACAAGGACCAAGTAACTGGAGTGGTGGTTTACACAGTAGAGAGCTCCACAGTGAAGGAAATAGCCATGGGGATGACCTGGATCTGCCTCTATTTGATTTGGAGACAATAGCATCAGCCACAAATGGTTTCTCAGCAGACAACAAACTTGGAGAAGGTGGCTTTGGGCCAGTATACAAGGGTACACTAGAGGATGGGCAAGAAATAGCAGTTAAAACACTTTCAAAGACGTCAGTACAGGGTCTTGATGAGTTCAGGAATGAGGTTATGTTGATAGCTAAACTCCAGCATCGAAATCTTGTTCAACTTATTGGCTACAGCGTTTGTGGACAAGAAAAGATGCTTCTATACGAATTTATGGAAAACAAAAGCCTGGACTGTTTCCTGTTTGACAAATCCAAGAGCAAGCTACTTGACTGGCAAACAAGATACCACATAATCGAGGGGATTGCCCGAGGTTTGCTGTATCTTCACCAGGACTCAAGATATAGAATCATCCACAGAGACCTGAAGACAAGCAACATTCTTCTGGATAAGGAGATGACTCCTAAAATTTCAGACTTTGGTATGGCAAGAATGTTTGGCAGTGACGACACGGAAATAAATACAGTTAGAGTGGTTGGCACATACGGCTATATGGCCCCCGAGTACGCAATGGATGGAGTATTTTCAGTGAAATCAGATGTATTCAGTTTCGGCGTCATAGTGCTAGAAATCATTTCTGGTAAAAGGAACAGGGGTGTCTACAGCTACTCCAGCCACCTAAACCTTCTAGCACGTGCATGGAGCTCATGGAGTGAAGGGAACAGCCTCGATCTCGTCGACAAAACACTGAACGGCTCATTCAACCAAGAGGAAGTGCTAAAATGCCTCAAAGTGGGGCTCCTATGTGTCCAGGAGAACCCGGACGACCGTCCTCTCATGTCCCAGGTGCTCCTGATGCTGGCCAGCGCCGATGCCACCTCATTGCCAGATCCCAGGAAGCCTGGGTTCGTCGCAAGAAGAGCTGCAACGGAGGACACGTCGTCGAGCAGACCAGACTGCAGCTTCGTGGACAGCATGACCATCACCATGATCGAGGGCAGGTAG
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| Protein seq | MAIHQLSFVLLLMLLAPATSRARDSIAPGEPLAGHDTLVSAGAGDGGGFALGFFTPPGSNDTYVGVWYARVSPRTVVWVANRADPVPGPVDGNAGATLSVSRACELAVADANSTVVWSVTPATTGPCTARIRDDGNLVVTDERGRVAWQGFDHPTDTLLPGMRIGVDFAAGNNMTLTAWKSPSDPSPSSVVVAMDTSGDPEVFLWNGPNKVWRSGPWDGMQFTGVPDTITYKNFSFSFVNSAREVTYSFQVPDASIMSRLVLNSSGGGLVQRWTWVEAAGAWNLYWYAPKDQCDAVSPCGANGVCDTNSLPVCSCLRGFAPRSPAAWALRDGRDGCARETPLGCANGTDGFAVVRHAKAPDTTAATVDYDAGLQLCRRRCLGNCSCTAYANANLSAPPGRRGCVMWTGELEDLRVYPAFGQDLYVRLAAADLDSTSKSKKKTHIIIAVVVSICALAIILALTGMYIWRTKKTKARRQGPSNWSGGLHSRELHSEGNSHGDDLDLPLFDLETIASATNGFSADNKLGEGGFGPVYKGTLEDGQEIAVKTLSKTSVQGLDEFRNEVMLIAKLQHRNLVQLIGYSVCGQEKMLLYEFMENKSLDCFLFDKSKSKLLDWQTRYHIIEGIARGLLYLHQDSRYRIIHRDLKTSNILLDKEMTPKISDFGMARMFGSDDTEINTVRVVGTYGYMAPEYAMDGVFSVKSDVFSFGVIVLEIISGKRNRGVYSYSSHLNLLARAWSSWSEGNSLDLVDKTLNGSFNQEEVLKCLKVGLLCVQENPDDRPLMSQVLLMLASADATSLPDPRKPGFVARRAATEDTSSSRPDCSFVDSMTITMIEGR |
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| Function | Receptor-like serine/threonine-protein kinase SD1-8 [UniProtKB/Swiss-Prot:O81905] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0501400 | OsNip_05t0501400-01 | Chr05 | 24676774 | 24682608 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCATCCATCAGCTCAGCTTCGTGCTCCTCCTCATGCTGCTCGCGCCGGCGACGTCGCGTGCCCGCGACAGCATCGCGCCGGGCGAGCCGCTCGCGGGCCACGACACGCTCGTCTCTGCCGGCGCCGGCGACGGCGGCGGCTTCGCGCTCGGGTTCTTCACCCCGCCGGGATCCAACGACACCTACGTCGGGGTGTGGTACGCGCGGGTGTCCCCCCGCACCGTCGTCTGGGTCGCCAACCGCGCCGACCCCGTCCCGGGCCCCGTCGACGGCAACGCCGGCGCCACGTTGTCCGTGTCCCGCGCCTGCGAGCTCGCCGTCGCCGACGCCAACTCCACCGTCGTGTGGTCGGTCACGCCGGCGACGACAGGGCCCTGCACGGCGAGGATACGGGACGACGGCAACCTGGTCGTCACCGACGAGCGCGGCCGGGTGGCGTGGCAGGGGTTCGACCACCCCACCGACACGCTGCTCCCCGGGATGAGGATTGGGGTGGACTTCGCCGCCGGCAACAACATGACGCTGACGGCGTGGAAGAGCCCCTCCGACCCGTCGCCGAGCTCTGTGGTCGTGGCCATGGACACCTCCGGCGATCCGGAGGTGTTCCTCTGGAACGGGCCGAACAAGGTGTGGCGCTCCGGCCCCTGGGACGGCATGCAGTTCACCGGCGTCCCGGACACCATCACCTACAAGAACTTCAGCTTCAGCTTCGTGAACAGCGCCCGGGAGGTCACCTACAGCTTCCAGGTGCCCGACGCGAGCATCATGTCGCGGCTGGTGCTGAACAGCAGCGGCGGCGGGCTGGTGCAGCGGTGGACGTGGGTGGAGGCGGCGGGGGCGTGGAACCTGTACTGGTACGCGCCCAAGGACCAGTGCGACGCCGTGTCGCCGTGCGGCGCCAACGGGGTGTGCGACACCAACAGCCTCCCCGTGTGCTCCTGCCTCCGCGGGTTCGCGCCGCGGTCGCCGGCGGCGTGGGCGCTGCGGGACGGCCGCGACGGGTGCGCGCGGGAGACGCCGCTCGGTTGCGCCAACGGCACCGACGGGTTCGCCGTGGTGCGGCACGCCAAGGCGCCCGACACGACCGCCGCGACGGTGGACTACGACGCCGGCCTCCAGCTGTGCCGGCGGAGGTGCCTGGGCAACTGCTCGTGCACGGCGTACGCCAACGCCAACCTCAGCGCGCCGCCCGGGCGCCGCGGCTGCGTCATGTGGACCGGCGAGCTGGAAGACCTTCGAGTGTACCCGGCCTTCGGCCAGGACCTCTACGTCCGCCTCGCCGCCGCCGATCTCGATTCAACAAGCAAGTCTAAGAAGAAGACGCACATTATAATTGCAGTAGTTGTCAGCATCTGTGCGCTGGCAATTATTTTAGCCCTTACTGGGATGTACATTTGGAGAACAAAGAAGACAAAAGCAAGGCGACAAGGACCAAGTAACTGGAGTGGTGGTTTACACAGTAGAGAGCTCCACAGTGAAGGAAATAGCCATGGGGATGACCTGGATCTGCCTCTATTTGATTTGGAGACAATAGCATCAGCCACAAATGGTTTCTCAGCAGACAACAAACTTGGAGAAGGTGGCTTTGGGCCAGTATACAAGGGTACACTAGAGGATGGGCAAGAAATAGCAGTTAAAACACTTTCAAAGACGTCAGTACAGGGTCTTGATGAGTTCAGGAATGAGGTTATGTTGATAGCTAAACTCCAGCATCGAAATCTTGTTCAACTTATTGGCTACAGCGTTTGTGGACAAGAAAAGATGCTTCTATACGAATTTATGGAAAACAAAAGCCTGGACTGTTTCCTGTTTGACAAATCCAAGAGCAAGCTACTTGACTGGCAAACAAGATACCACATAATCGAGGGGATTGCCCGAGGTTTGCTGTATCTTCACCAGGACTCAAGATATAGAATCATCCACAGAGACCTGAAGACAAGCAACATTCTTCTGGATAAGGAGATGACTCCTAAAATTTCAGACTTTGGTATGGCAAGAATGTTTGGCAGTGACGACACGGAAATAAATACAGTTAGAGTGGTTGGCACATACGGCTATATGGCCCCCGAGTACGCAATGGATGGAGTATTTTCAGTGAAATCAGATGTATTCAGTTTCGGCGTCATAGTGCTAGAAATCATTTCTGGTAAAAGGAACAGGGGTGTCTACAGCTACTCCAGCCACCTAAACCTTCTAGCACGTGCATGGAGCTCATGGAGTGAAGGGAACAGCCTCGATCTCGTCGACAAAACACTGAACGGCTCATTCAACCAAGAGGAAGTGCTAAAATGCCTCAAAGTGGGGCTCCTATGTGTCCAGGAGAACCCGGACGACCGTCCTCTCATGTCCCAGGTGCTCCTGATGCTGGCCAGCGCCGATGCCACCTCATTGCCAGATCCCAGGAAGCCTGGGTTCGTCGCAAGAAGAGCTGCAACGGAGGACACGTCGTCGAGCAGACCAGACTGCAGCTTCGTGGACAGCATGACCATCACCATGATCGAGGGCAGGTAG
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| Protein seq | MAIHQLSFVLLLMLLAPATSRARDSIAPGEPLAGHDTLVSAGAGDGGGFALGFFTPPGSNDTYVGVWYARVSPRTVVWVANRADPVPGPVDGNAGATLSVSRACELAVADANSTVVWSVTPATTGPCTARIRDDGNLVVTDERGRVAWQGFDHPTDTLLPGMRIGVDFAAGNNMTLTAWKSPSDPSPSSVVVAMDTSGDPEVFLWNGPNKVWRSGPWDGMQFTGVPDTITYKNFSFSFVNSAREVTYSFQVPDASIMSRLVLNSSGGGLVQRWTWVEAAGAWNLYWYAPKDQCDAVSPCGANGVCDTNSLPVCSCLRGFAPRSPAAWALRDGRDGCARETPLGCANGTDGFAVVRHAKAPDTTAATVDYDAGLQLCRRRCLGNCSCTAYANANLSAPPGRRGCVMWTGELEDLRVYPAFGQDLYVRLAAADLDSTSKSKKKTHIIIAVVVSICALAIILALTGMYIWRTKKTKARRQGPSNWSGGLHSRELHSEGNSHGDDLDLPLFDLETIASATNGFSADNKLGEGGFGPVYKGTLEDGQEIAVKTLSKTSVQGLDEFRNEVMLIAKLQHRNLVQLIGYSVCGQEKMLLYEFMENKSLDCFLFDKSKSKLLDWQTRYHIIEGIARGLLYLHQDSRYRIIHRDLKTSNILLDKEMTPKISDFGMARMFGSDDTEINTVRVVGTYGYMAPEYAMDGVFSVKSDVFSFGVIVLEIISGKRNRGVYSYSSHLNLLARAWSSWSEGNSLDLVDKTLNGSFNQEEVLKCLKVGLLCVQENPDDRPLMSQVLLMLASADATSLPDPRKPGFVARRAATEDTSSSRPDCSFVDSMTITMIEGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0501400 | OsNip_05t0501400-02 | Chr05 | 24676770 | 24682556 | + | IsoSeq | ||
| CDS seq | CAGCGAACGCGTCACTCGCGCGCACCGCGACGAATCGACCATATGGCCATCCATCAGCTCAGCTTCGTGCTCCTCCTCATGCTGCTCGCGCCGGCGACGTCGCGTGCCCGCGACAGCATCGCGCCGGGCGAGCCGCTCGCGGGCCACGACACGCTCGTCTCTGCCGGCGCCGGCGACGGCGGCGGCTTCGCGCTCGGGTTCTTCACCCCGCCGGGATCCAACGACACCTACGTCGGGGTGTGGTACGCGCGGGTGTCCCCCCGCACCGTCGTCTGGGTCGCCAACCGCGCCGACCCCGTCCCGGGCCCCGTCGACGGCAACGCCGGCGCCACGTTGTCCGTGTCCCGCGCCTGCGAGCTCGCCGTCGCCGACGCCAACTCCACCGTCGTGTGGTCGGTCACGCCGGCGACGACAGGGCCCTGCACGGCGAGGATACGGGACGACGGCAACCTGGTCGTCACCGACGAGCGCGGCCGGGTGGCGTGGCAGGGGTTCGACCACCCCACCGACACGCTGCTCCCCGGGATGAGGATTGGGGTGGACTTCGCCGCCGGCAACAACATGACGCTGACGGCGTGGAAGAGCCCCTCCGACCCGTCGCCGAGCTCTGTGGTCGTGGCCATGGACACCTCCGGCGATCCGGAGGTGTTCCTCTGGAACGGGCCGAACAAGGTGTGGCGCTCCGGCCCCTGGGACGGCATGCAGTTCACCGGCGTCCCGGACACCATCACCTACAAGAACTTCAGCTTCAGCTTCGTGAACAGCGCCCGGGAGGTCACCTACAGCTTCCAGGTGCCCGACGCGAGCATCATGTCGCGGCTGGTGCTGAACAGCAGCGGCGGCGGGCTGGTGCAGCGGTGGACGTGGGTGGAGGCGGCGGGGGCGTGGAACCTGTACTGGTACGCGCCCAAGGACCAGTGCGACGCCGTGTCGCCGTGCGGCGCCAACGGGGTGTGCGACACCAACAGCCTCCCCGTGTGCTCCTGCCTCCGCGGGTTCGCGCCGCGGTCGCCGGCGGCGTGGGCGCTGCGGGACGGCCGCGACGGGTGCGCGCGGGAGACGCCGCTCGGTTGCGCCAACGGCACCGACGGGTTCGCCGTGGTGCGGCACGCCAAGGCGCCCGACACGACCGCCGCGACGGTGGACTACGACGCCGGCCTCCAGCTGTGCCGGCGGAGGTGCCTGGGCAACTGCTCGTGCACGGCGTACGCCAACGCCAACCTCAGCGCGCCGCCCGGGCGCCGCGGCTGCGTCATGTGGACCGGCGAGCTGGAAGACCTTCGAGTGTACCCGGCCTTCGGCCAGGACCTCTACGTCCGCCTCGCCGCCGCCGATCTCGATTCAACAAGCAAGTCTAAGAAGAAGACGCACATTATAATTGCAGTAGTTGTCAGCATCTGTGCGCTGGCAATTATTTTAGCCCTTACTGGGATGTACATTTGGAGAACAAAGAAGACAAAAGCAAGGCGACAAGGACCAAGTAACTGGAGTGGTGGTTTACACAGTAGAGAGCTCCACAGTGAAGGAAATAGCCATGGGGATGACCTGGATCTGCCTCTATTTGATTTGGAGACAATAGCATCAGCCACAAATGGTTTCTCAGCAGACAACAAACTTGGAGAAGGTGGCTTTGGGCCAGTATACAAGGGTACACTAGAGGATGGGCAAGAAATAGCAGTTAAAACACTTTCAAAGACGTCAGTACAGGGTCTTGATGAGTTCAGGAATGAGGTTATGTTGATAGCTAAACTCCAGCATCGAAATCTTGTTCAACTTATTGGCTACAGCGTTTGTGGACAAGAAAAGATGCTTCTATACGAATTTATGGAAAACAAAAGCCTGGACTGTTTCCTGTTTGGTATGCCTTTAACCTTTGTGAGCATGAAAAATTCCATATCTATCAAGGAACAAACAGAAATCTTCCTATGTTCTCAGACAAATCCAAGAGCAAGCTACTTGACTGGCAAACAAGATACC
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| Protein seq | QRTRHSRAPRRIDHMAIHQLSFVLLLMLLAPATSRARDSIAPGEPLAGHDTLVSAGAGDGGGFALGFFTPPGSNDTYVGVWYARVSPRTVVWVANRADPVPGPVDGNAGATLSVSRACELAVADANSTVVWSVTPATTGPCTARIRDDGNLVVTDERGRVAWQGFDHPTDTLLPGMRIGVDFAAGNNMTLTAWKSPSDPSPSSVVVAMDTSGDPEVFLWNGPNKVWRSGPWDGMQFTGVPDTITYKNFSFSFVNSAREVTYSFQVPDASIMSRLVLNSSGGGLVQRWTWVEAAGAWNLYWYAPKDQCDAVSPCGANGVCDTNSLPVCSCLRGFAPRSPAAWALRDGRDGCARETPLGCANGTDGFAVVRHAKAPDTTAATVDYDAGLQLCRRRCLGNCSCTAYANANLSAPPGRRGCVMWTGELEDLRVYPAFGQDLYVRLAAADLDSTSKSKKKTHIIIAVVVSICALAIILALTGMYIWRTKKTKARRQGPSNWSGGLHSRELHSEGNSHGDDLDLPLFDLETIASATNGFSADNKLGEGGFGPVYKGTLEDGQEIAVKTLSKTSVQGLDEFRNEVMLIAKLQHRNLVQLIGYSVCGQEKMLLYEFMENKSLDCFLFGMPLTFVSMKNSISIKEQTEIFLCSQTNPRASYLTGKQDT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr05 | 24681219 | 24681744 | + | OsNip_05t0501400-02 | OsNip_05t0501400-02,OsNip_05t0501400-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.257826 | 0.090645 | 0.866289 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0784700 | RBH | 5.725814 | 6.668283 | 0.207914 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g42210 | RBH | 0.174927 | 0.061167 | 0.360851 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0501400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0022630 | RBH | 0.000000 | 0.0 | 1.882727 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0022560 | RBH | 0.0 | 0.0 | 0.828567 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0022510 | RBH | 0.303136 | 0.000000 | 1.927463 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0022480 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0022570 | RBH | 1.152473 | 0.0 | 5.931616 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0382700 | RBH | 1.4183505 | 0.7231515 | 2.1638965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022170 | RBH | 0.034879 | 0.000000 | 0.398360 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0392800 | RBH | 1.1359995 | 0.163461 | 1.970359 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0022390 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022430 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022490 | RBH | 0.0 | 0.0 | 0.153958 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0022470 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021920 | RBH | 0.0 | 0.0 | 0.227276 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022330 | RBH | 0.0 | 1.436371 | 1.555127 |
