Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0784700 | OGI:01099740 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:33248739-33256713 | ||||||||
| Gene Symbol | SDRLK-3 | ||||||||||
| DNA seq | AACATTAATGCTATAGTGCTTTGAAATATCACCAAATAACAATAACTTCCGTAGTTTCTGTCACTACAGTTTAGGATAACTGCTGAATTGAGGGAACCATACCCTAGTTGGTGCAGTTATTCAATAATTATGCAAATTTCTGTTGCTCAAACACACGGTGATGAAGAAAGCACATTATGTAATGCACATTCCCCTAGTAAGTTCAATTAGCACATTAACATCCTATCGACCTTCAAGTATAGTAACTGTTGCACTGTCGAATATGCTGCAGTCTGGCTTGCTTGATGATGTGTCTGTTTCCATTAGAATTCTTCTAGCTGCAAAGCCAGGCTGTTTAGGAGTTGGCAATGTGGTAGCATCTGTCGTAGCTAACATCAGAAGCACCTGAGACATCAATGGACGGTCATCTGGGTTCTCTTGCACACATAGGAGTCCCACTCTGATGCATTTGAGTACTTCATCTGAGTCGAACGAGCCATTCATTGTTTCATCTGCTAACTCCAAGCTTTTTCCTTCATTCCATAAGCTCCATGCCTAAGGGGCAAAAAAAGAAAAAAAGTTTTTGAAGTTACTCTGAAATTGAATTGAGAAAACAACTTCCATTCAAACATGTAGTAGATGATTTAAGCTCTCACATGTCCCAGAAGATTTAGGTGGTTTGAATATGAATAAACCCCTCTGTTCCTCCTGCCACTAATTATTTCCAGTAGTAAAACTCCAAAACTAAATACATCTGATTTGACAGAAAAGACTCCGTCCATTGCATATTCTGGAGACATATAGCCACTACAAAAGAGCCAAAATGAATAAAGCAAATATATGAGTAAATTCATTTATACGATCAGTATTTCCTGTTGTAAATACTTAGCATACTTACTATGTGCCGACCACTTTTCTGGTATTGATTTCTGTCTCTTCACTTCCAAACATTCTTGCCATGCCAAAGTCAGAAATTTTGGGAGTCATCTCCTTGTCAAGAAGAACATTACTTGCCTTCAGGTCTCTGTGGATGATTCTGTATCTTGAATCCTGGTGAAGATATAGTAAACCTCTAGTAATGCCTTCTATTATACGGTATCGCGCTTGCCAGTCAAGCAGGACACTGTTGGATTTTTCTGTTACATTTGCAAACTGTTATGTTCTTCACAGTATTATCAGCCATTTTTTTCATGGTCATAAAAAGACTGAGATAGTCATACCGAACAGAAAGTAGTCTAGGCTCTTGTTTGCCATGTATTCGTACACAAGTATCCTTTCTTGTCCACTAATGCTGAAGCCGAGAAGCCGAACAAGATTCCTATGCTGAAGTTTAGCTATCAACATTACCTCATTCTTGAATTCGTCGAGACCCTGTACGGATGTTTTGGACAACGTTTTAACTGCTATTTCTTGTCCATCCTCGAGCTTACCCTGTTGATCAACCAGACATAGCGGCTGTAGTTCAAATTTCAGAAGATCATTTTTTTTATGCTATCATTGTTCGTTCATTTATATGCTGAAGACCTTAAATAATTGCCTTTTGATGCTTGAAATCATGAGTTGCCATTTTTTTGAACGAAAATCATGAGTTGCCATTGAACTTGCGTTCAAAATGTTTGCATGTTTATGCGTGATTCATTGGGGTGGTTCATGTAGTGTTGTACCTTGTATACTGGTCCGAAGCCACCCTCACCGAGCTTGTTGTTGATTGAGAAACCATCAGTAGCAGCTGCAATTGTCCCCAGATCAAAGATTGGAAGTTCCAGATCATCATCGTGATGACTGCTTCCTTCATAGCGGCGACCAGTACTGCGGGAACCACCGCTCCATTTGCTTGATCCTATAATCACATAGAAGTCGGTATGAGTATGATACCCTGAAATATGCTTATTATTTTCCCCTCTTTTTGTTCAAGTATTTATATGGAGTATCTGCTTGTTAACACTCGGAAGACACATGGCCATTACCGGTTTTTCTTGCTCTCTTCTTCTTTCTTGTCCAGACGAGAAAACCAGCGAGAACTGACAGAAACGTCACCGATGAGATGCTGACAACGATGGCGATTATTACACGTGCCTTGTTAGATTTGCTTGTTAAACCTGTGCAAGAAAAACGTAGCTGTTAAATCGATGATGGTATGCAACGACATATCGACTAATTTATCTAGAGGAATATAATGAGTTGCCCCATATATGAGCATTTAATCAGTATTACCTGTTTGGTTTGGAATATGGAACGATTATTGCTACAGAATATCTATTTACTGTAGGAATATTTTTTTAAAAAAAATAAATATCTTAAAAGAAGTGGCCATGTTCTTTTCTCCAACAAAAGTTGAATAAACTTTTGGATACTAGTGATACGCTTTTCAAACTGCTAAAATGTGCGTTTCGTGTAAAAATTTTCTATATGAAAGCTGTTATAATATATCAGATTAATCTATTTTTTAAGTTTGTAATAATTAAAACTTAATTAATCATATGTTATTATCATCTCGTTTTACGTGAAACACTTAATCTTTTTCTTAAGGAGATTCAAACACCACCTAAGTAATGCTATTGGAAAGGTTTTTTTAATAAAATATATTTTTTGTGAAGCAAATAATCTGATGAAAAAGCCGAGAAGAATAGGGGCCTATTCGTAGAGCAGAGTAGCGCGCTGAACAACATGTAGTGCCACATATGATGCCCTCGAAACAATGCCAAACCAGAGTCAGATGCTCTGTTTCAGGTACACCTGGAAACCTTGCGCTACAGCATCACAGGCGATCTACAGTGGCAAATGCACGTGAATATGTGATCAACCATGAACCAGTTCAACATGTTTACCCAAGTACCCAACCTCTTCGTAAGGATTTATCGGTGTCTAGCGTTTGAACATTTGTGGTTTTGAATTCTCTAGAGGCACAGAGGCCTTCACGCTTTGTGTTTTCGGTTAGCCCAGCAACGCCGCAGAGCCCGGCGTCCGGCGACGCATCACACGTTCACATATTTGTCCATGCACTGTCTCGATGGTTCGGCCGGTACGCCGCCCGCGGCCGCGCGTGCAGTGTGTGCTGGAAAGCGAGGCGTATGGCCGATTGGCCGGCCACCCCCGCTGGCCGCTGCCATGTCGCGGGTGGCGCGGTGGCGGCCGGTCGCTTTGGAGCGTGGTTTTTGCACGGAAAATATCTCTCCCGGCTGGGCGATAAAGCGAAGTGACCGATGGTTGTTTGATTGCGACGTGAAGCTTGTGGCAGCTGGGATGTTTTCTGGCTTGACTCGGCGAGGGAAGATTCTTGGCATCGATCTGTCCGGTTCCAAATCCAATTCCCAACGAAGCTACTCCCTCCGTCCCATAAAAAACCAACTTAGTATAGAATTTAAAACATCATAGTACTGTGTCTAGATTCGTAGTGCTACAATATGTCACATTTGGTTCTAGATTCGTTTTTTATGTGACGGAGGGAGTACAATCTAAGGCCTTGTTTAGATCGCGAAAAAATAAATTTGGGTGTCACATCAGACATTTCATCGGATGTCGGAATGGGTTTTCAGACACAAATGAAAAAATTAATTTCAAAAATCGCCTGGAAACCGCGAGACGAATTTATTAAGCCTAATTAATCCGTCATTAGCACATGTGGGTTACTATAGCACTTATGGCTAATCATGGACTAATTAGGCTCAAAAGGTTTGTCTTCCGATTTCTATGCAAACTGTGCAATTTGTTTTTTTCTTTATCCAATATTTAATGCTCCATGCATGTATCAAAGATTCGATGAGACGTTTTTAGAAAAAAAAAATGGGAACTAAACAAAGCCAGTGCTATTACTTCTGCTCCATCTTTCCTACTCCCACCGTCTCATAAAAAAACAAATCTATGATAGTACTCCATCCGTCCCAAAATAAGCGTAGCCATGAGTTTCCATGCCCAACTTTAATCGTCCGTCTTATTTGAAATTTTTTCCAAAAAACTAAAAAACATAAGTCAAGCGTAGAGTCTATTCATGTTTTATAATCTATTAACTTATTAAAGTAATAGAAAAAGAAAGCCTCCACGTTCGTTCTCGTGGTCTAGAAATTCTCATATTAATTGAAGAAAAAGAAAAATAGAATCCATATAGAAATACAATTTAGAAATAGCTGAAATTCAGAATTAAAAAATAATGAATATTGGAATATGAGACTAGAGTCCATATCGATATACAATTTAGAATTAATGGAAATTCTGAATTAAAAAAAAATAAGAATATATGAGAGAAAATATAATGATCCTAGCCGCACAATCTGCAAGGGACACCATGCTAATTTTTATAATATAACAACAATAAAAATCAAATCATAAAAAAATTTCAAATAAGACGGACGATCAAAGTTGAACACGGAAACTCATGGTTGCACTTATTTTGGGATGGAGGGAGTATATGACATCCTATTACCACGAATATGAATATGTGTATATCCAAATTCATAGTATTAAAATGTGTCACATCCACTACTAGGTTGGTCCCATAATATAAAGGATTTTAGGTAGGTGTGACATATCCTAATACAATGAATCTGCCCAGATTCATTATACTAGGATATATCACATCTATCTAAAATCTCTTATATTATGGGACGGAGGGACTACAACAATCTAAAACCGAAGGAGACATTAGGTTGTTTGATTACCACGTAGAGCTTTGTGGCAGATGGGATGTTTTCTAGCTCTCGGCAAGGGCAGATTCTTCACATCGATCTACCCGGTTCCAAATCCAATTCCCAACAAGGCTACAACTTTCTACTCCCTCTGTCCCTGTATATAAGGGATTTTGGTGTGGGATATGAGACATCCTAGTATAACAAATCTAGACAAACAGTTTAAATTTGTTGTACTAGGAACTTCTACTCCCTCCTTTCCACTAGTATACTAATCCCTCCGTCTCTTTTAAATGCAATCATGGATTTTTCATATACAACATTTGACCATCTGTCTTATTTGAAAAAAAATATGAAAAAATTTTAAAAAATAAGTCATGCATAAAGTATTATTTATTTTTATCATCTAATAAAAATAAAAATATTAATCATAAAATTTTTTAAATAAGATGGACGGTCAAACGTCAGACGCAGGAATTCTCAACTGCAGATATAATGGGACGGAGGGAGTACTTCTACTCCCTCTTTCCTACACTATAATAATATAGAACTGAATATAGGATGTGTTCAAAACTAAATGGGACATTAGAATATATCGCATCTGATACTAGGTTATTATATTATACGACGAAGAGAGTACTTCTTAGTTTTTTTTTTGTCATGTGAACTTACCATCGTCTTAAAATACTATTATTGAACACAACAAGCGTAAGATCCAAATTAAGTTCCAAGTTGCACCGTGAGTTCAAACTTCAGACCATCAAATTCGTTTCCAATTTATAAGCTAAAGATTTGTACGTACATCTACAGATCTACTGCAATCCCTGCCTCTGCCTATCTCCTCAAATAATGAGGATCATTGTCTATTTGTCTTGTCGCTGTTGACTAGAGCTATCCAAGATCTGCTACTTTATCTTCTTCCCGGCGAAATTTCACCTACCAATCAAGACGACGGCCACACTTCGCTCTTGTGGTGTACAGGGCCCTCTAATCTTTGTACTAGCTGCCAAATCGGGCAAGCCCCACACCATGTAAAAGGCTCCTTTGGTCGATGATACACGTCGAGGCGATCAGTAGGGGCCTCACAAATGGCCGGGCAGCAATGGATCGACTCGAGAATGCTGCACGGGAGCTAGCAGGTGCAGTGATATGATGCACGTTGGAGAGATCGACGTGGAAGCCGTCTCATTCCTCTACCGTGTATAATTGAGCTTTTGTTGCGCGCGATAGCTCCTAAAATCAAAGCGTGCTTCTTTTGCGACGATAAGCGCCCCGCCTTCGAAAGAGCCCGGGACCAAATGGTATCGATCGCTGTCTGGCTAATTAATCAAAGCTCCTTTCGCTTCCTTTCTCCCTTGCTAACATCGATCGGTTTCATGATGGAGAGAAAAGGAGATTAAAGGGCAAGGAATAAAGATGGCCGGAATCAAAATCAATGTCGTGATCGTCTTCCAGTGAAATGGATCAGGGCAGCAAGTTCTCTCGGTTGAAGCAGGGCACGCTGCGTGGCACTCATCATCTCTTTCTAATCTTCTATTGAGATTCTCCCCAAAAAAGGAGGGATTGGAGCTATGGAGGATTAGAGGGAGATAGCCAAAAAGGAATGGACTAGGAGGCCCAAATATCTGGCCTTCGACGGTACTTTTGTGCTGTCTGATTTGGACGGAACGAACACCAAACACATGGAAAAGATTCTATATGCAGCGCAGCATGCATGGAATACGTAAAACATGCACGTAATACGTAGATATATACGTACGTATGTAGCAATGCATAGTACATAGTTCGCGTGGAATGTGATGGCGTACCGAGATCTGCGGCGGCGAGGCGGACGAAGAGGTCCTGGCCGAACTCCGGGTACACGCGCAGGTCGGTGAGCCCGGTCGTCCACATGACGCAGCCGGTGCCGGCGCCGTGGCCGCGGCCGCCACCGCTCACGTTGGCGCTCGCGTACGCCGTGCAGGAGCAGTTCATGAGGCACGCCTTCCGGCACTGCTCCAGGCTGAGGCCCAGGTCCACGACGCTCCGCTCCGTGTCGGGCACCTTGGCGTGCTCCACGGCGACGAACCCGTCGGTGCCGTTCTGGCAGTCGAGCGGCGTCGACCGCACGCACCCCGCGCGGCCGTCACGCAGCGCCCACGCCTCGGGCGACTTGGGCGTGAAGCCGCGGAGGCAGGAGCAGACGGGCAGGTTGTTTGTGTCGCACACGCCGTTGGCCCCGCACGGGGACACCTCGTCGCACTGGTCCTTGGGCGCGTACCAGTACAGGTTCCACGTCCCCGCCGCCTCCACCCACGTCGACCGCTGCAGCAGCCCGTAGCTCCCCGTGCTGTTCAGCCCCAGCCTCGATATGATCGACACGTTGTGCACCTACACGAACACGCGCACGCGTGTCATATATGACATGGCACCAGCGGTACGGTACAACTCCAATAAAATTTAAAAAGTTGTACACATAAATTGCACGGGTACTCGTCAGTTTATACCTGGAAGCTGTACGTGACTTCCTTGGCGTTGTTGATGAAGCTGAAGGTGAAGCCGGAGTAGGTGACGGTGTCCGGGACGCCGGTGAACTGGACGCCGTCCCAGGGGCCGGAGCGCCAGACCTTCTCGGCGCCGTTCCAGATGAACACCTGGGGGTCGCCGGACGTGTCCATGGCCATCACGACGGGGCCCGGCGAGGGGTCGGAGGGGCTCTTCCACGCCGTCAGCGTCCTGTTCCTCCCCTTCACGTAGTCGACGCCCAGCCTCATCTCCGGGAGCAGCGTGTCGGTCGGGTAGTCGAACCCCTGCCACGCCACGCCACCGCCAGCGCCGTCCGCGATCACCAGGTTTCCGCTGTCCATGATCCGGGCCGTGGGGCTCGCCAGCTTGGCCGCCGGCGTGACCGACCACACAACGGTCGAGTTCCCCGCTACAATGGCGAGCGTGCCCGTGGGCGACACGGAGAGCGTGGCGTCGGGGTTGTCCGCGACGTCGCCGGGGAGCGGGTCCTCGCGGTTGGCGACCCAGACGACGGTGCGGACCGAGACCTTGTTGTACCAGACGCCGACGTAGGTGCTGTTGGCGCCCGGCGGGGTGAAGAAGCCGAGCACGAAGTTGGCGTCGCCGCCCGAGACCAGCGTCTCGTTCGCGGCGAGCGGGCGGCCGGGCACGACTGTGTCCCTGGCACGGCAGCTGCCCGTGAGCACCACGACGACGACGAAGAGCAGCAGGTAGCAGCAGAGCGGGGAGGAGGAGGCCATTGCTAGGATTCCCGGCGCGCGCGAGCAACGAGCGAGCGGTGCTATGCTAACACGCCACTGCGAGAGTGAGTAGCCGTCGTGCACAAGTGCGGTTTTGGACCGGAGCTAGTTGCAAGACGGGGTGGGCCG
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| CDS seq | ATGGCCTCCTCCTCCCCGCTCTGCTGCTACCTGCTGCTCTTCGTCGTCGTCGTGGTGCTCACGGGCAGCTGCCGTGCCAGGGACACAGTCGTGCCCGGCCGCCCGCTCGCCGCGAACGAGACGCTGGTCTCGGGCGGCGACGCCAACTTCGTGCTCGGCTTCTTCACCCCGCCGGGCGCCAACAGCACCTACGTCGGCGTCTGGTACAACAAGGTCTCGGTCCGCACCGTCGTCTGGGTCGCCAACCGCGAGGACCCGCTCCCCGGCGACGTCGCGGACAACCCCGACGCCACGCTCTCCGTGTCGCCCACGGGCACGCTCGCCATTGTAGCGGGGAACTCGACCGTTGTGTGGTCGGTCACGCCGGCGGCCAAGCTGGCGAGCCCCACGGCCCGGATCATGGACAGCGGAAACCTGGTGATCGCGGACGGCGCTGGCGGTGGCGTGGCGTGGCAGGGGTTCGACTACCCGACCGACACGCTGCTCCCGGAGATGAGGCTGGGCGTCGACTACGTGAAGGGGAGGAACAGGACGCTGACGGCGTGGAAGAGCCCCTCCGACCCCTCGCCGGGCCCCGTCGTGATGGCCATGGACACGTCCGGCGACCCCCAGGTGTTCATCTGGAACGGCGCCGAGAAGGTCTGGCGCTCCGGCCCCTGGGACGGCGTCCAGTTCACCGGCGTCCCGGACACCGTCACCTACTCCGGCTTCACCTTCAGCTTCATCAACAACGCCAAGGAAGTCACGTACAGCTTCCAGGTGCACAACGTGTCGATCATATCGAGGCTGGGGCTGAACAGCACGGGGAGCTACGGGCTGCTGCAGCGGTCGACGTGGGTGGAGGCGGCGGGGACGTGGAACCTGTACTGGTACGCGCCCAAGGACCAGTGCGACGAGGTGTCCCCGTGCGGGGCCAACGGCGTGTGCGACACAAACAACCTGCCCGTCTGCTCCTGCCTCCGCGGCTTCACGCCCAAGTCGCCCGAGGCGTGGGCGCTGCGTGACGGCCGCGCGGGGTGCGTGCGGTCGACGCCGCTCGACTGCCAGAACGGCACCGACGGGTTCGTCGCCGTGGAGCACGCCAAGGTGCCCGACACGGAGCGGAGCGTCGTGGACCTGGGCCTCAGCCTGGAGCAGTGCCGGAAGGCGTGCCTCATGAACTGCTCCTGCACGGCGTACGCGAGCGCCAACGTGAGCGGTGGCGGCCGCGGCCACGGCGCCGGCACCGGCTGCGTCATGTGGACGACCGGGCTCACCGACCTGCGCGTGTACCCGGAGTTCGGCCAGGACCTCTTCGTCCGCCTCGCCGCCGCAGATCTCGGTTTAACAAGCAAATCTAACAAGGCACGTGTAATAATCGCCATCGTTGTCAGCATCTCATCGGTGACGTTTCTGTCAGTTCTCGCTGGTTTTCTCGTCTGGACAAGAAAGAAGAAGAGAGCAAGAAAAACCGGATCAAGCAAATGGAGCGGTGGTTCCCGCAGTACTGGTCGCCGCTATGAAGGAAGCAGTCATCACGATGATGATCTGGAACTTCCAATCTTTGATCTGGGGACAATTGCAGCTGCTACTGATGGTTTCTCAATCAACAACAAGCTCGGTGAGGGTGGCTTCGGACCAGTATACAAGGGTAAGCTCGAGGATGGACAAGAAATAGCAGTTAAAACGTTGTCCAAAACATCCGTACAGGGTCTCGACGAATTCAAGAATGAGGTAATGTTGATAGCTAAACTTCAGCATAGGAATCTTGTTCGGCTTCTCGGCTTCAGCATTAGTGGACAAGAAAGGATACTTGTGTACGAATACATGGCAAACAAGAGCCTAGACTACTTTCTGTTCGCGCGATACCGTATAATAGAAGGCATTACTAGAGGTTTACTATATCTTCACCAGGATTCAAGATACAGAATCATCCACAGAGACCTGAAGGCAAGTAATGTTCTTCTTGACAAGGAGATGACTCCCAAAATTTCTGACTTTGGCATGGCAAGAATGTTTGGAAGTGAAGAGACAGAAATCAATACCAGAAAAGTGGTCGGCACATATGGCTATATGTCTCCAGAATATGCAATGGACGGAGTCTTTTCTGTCAAATCAGATGTATTTAGTTTTGGAGTTTTACTACTGGAAATAATTAGTGGCAGGAGGAACAGAGGGGTTTATTCATATTCAAACCACCTAAATCTTCTGGGACATGCATGGAGCTTATGGAATGAAGGAAAAAGCTTGGAGTTAGCAGATGAAACAATGAATGGCTCGTTCGACTCAGATGAAGTACTCAAATGCATCAGAGTGGGACTCCTATGTGTGCAAGAGAACCCAGATGACCGTCCATTGATGTCTCAGGTGCTTCTGATGTTAGCTACGACAGATGCTACCACATTGCCAACTCCTAAACAGCCTGGCTTTGCAGCTAGAAGAATTCTAATGGAAACAGACACATCATCAAGCAAGCCAGACTGCAGCATATTCGACAGTGCAACAGTTACTATACTTGAAGGTCGATAG
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| Protein seq | MASSSPLCCYLLLFVVVVVLTGSCRARDTVVPGRPLAANETLVSGGDANFVLGFFTPPGANSTYVGVWYNKVSVRTVVWVANREDPLPGDVADNPDATLSVSPTGTLAIVAGNSTVVWSVTPAAKLASPTARIMDSGNLVIADGAGGGVAWQGFDYPTDTLLPEMRLGVDYVKGRNRTLTAWKSPSDPSPGPVVMAMDTSGDPQVFIWNGAEKVWRSGPWDGVQFTGVPDTVTYSGFTFSFINNAKEVTYSFQVHNVSIISRLGLNSTGSYGLLQRSTWVEAAGTWNLYWYAPKDQCDEVSPCGANGVCDTNNLPVCSCLRGFTPKSPEAWALRDGRAGCVRSTPLDCQNGTDGFVAVEHAKVPDTERSVVDLGLSLEQCRKACLMNCSCTAYASANVSGGGRGHGAGTGCVMWTTGLTDLRVYPEFGQDLFVRLAAADLGLTSKSNKARVIIAIVVSISSVTFLSVLAGFLVWTRKKKRARKTGSSKWSGGSRSTGRRYEGSSHHDDDLELPIFDLGTIAAATDGFSINNKLGEGGFGPVYKGKLEDGQEIAVKTLSKTSVQGLDEFKNEVMLIAKLQHRNLVRLLGFSISGQERILVYEYMANKSLDYFLFARYRIIEGITRGLLYLHQDSRYRIIHRDLKASNVLLDKEMTPKISDFGMARMFGSEETEINTRKVVGTYGYMSPEYAMDGVFSVKSDVFSFGVLLLEIISGRRNRGVYSYSNHLNLLGHAWSLWNEGKSLELADETMNGSFDSDEVLKCIRVGLLCVQENPDDRPLMSQVLLMLATTDATTLPTPKQPGFAARRILMETDTSSSKPDCSIFDSATVTILEGR |
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| Function | Receptor-like serine/threonine-protein kinase SD1-8 [UniProtKB/Swiss-Prot:O81905] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0784700 | OsNip_01t0784700-00 | Chr01 | 33248878 | 33256713 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCTCCTCCTCCCCGCTCTGCTGCTACCTGCTGCTCTTCGTCGTCGTCGTGGTGCTCACGGGCAGCTGCCGTGCCAGGGACACAGTCGTGCCCGGCCGCCCGCTCGCCGCGAACGAGACGCTGGTCTCGGGCGGCGACGCCAACTTCGTGCTCGGCTTCTTCACCCCGCCGGGCGCCAACAGCACCTACGTCGGCGTCTGGTACAACAAGGTCTCGGTCCGCACCGTCGTCTGGGTCGCCAACCGCGAGGACCCGCTCCCCGGCGACGTCGCGGACAACCCCGACGCCACGCTCTCCGTGTCGCCCACGGGCACGCTCGCCATTGTAGCGGGGAACTCGACCGTTGTGTGGTCGGTCACGCCGGCGGCCAAGCTGGCGAGCCCCACGGCCCGGATCATGGACAGCGGAAACCTGGTGATCGCGGACGGCGCTGGCGGTGGCGTGGCGTGGCAGGGGTTCGACTACCCGACCGACACGCTGCTCCCGGAGATGAGGCTGGGCGTCGACTACGTGAAGGGGAGGAACAGGACGCTGACGGCGTGGAAGAGCCCCTCCGACCCCTCGCCGGGCCCCGTCGTGATGGCCATGGACACGTCCGGCGACCCCCAGGTGTTCATCTGGAACGGCGCCGAGAAGGTCTGGCGCTCCGGCCCCTGGGACGGCGTCCAGTTCACCGGCGTCCCGGACACCGTCACCTACTCCGGCTTCACCTTCAGCTTCATCAACAACGCCAAGGAAGTCACGTACAGCTTCCAGGTGCACAACGTGTCGATCATATCGAGGCTGGGGCTGAACAGCACGGGGAGCTACGGGCTGCTGCAGCGGTCGACGTGGGTGGAGGCGGCGGGGACGTGGAACCTGTACTGGTACGCGCCCAAGGACCAGTGCGACGAGGTGTCCCCGTGCGGGGCCAACGGCGTGTGCGACACAAACAACCTGCCCGTCTGCTCCTGCCTCCGCGGCTTCACGCCCAAGTCGCCCGAGGCGTGGGCGCTGCGTGACGGCCGCGCGGGGTGCGTGCGGTCGACGCCGCTCGACTGCCAGAACGGCACCGACGGGTTCGTCGCCGTGGAGCACGCCAAGGTGCCCGACACGGAGCGGAGCGTCGTGGACCTGGGCCTCAGCCTGGAGCAGTGCCGGAAGGCGTGCCTCATGAACTGCTCCTGCACGGCGTACGCGAGCGCCAACGTGAGCGGTGGCGGCCGCGGCCACGGCGCCGGCACCGGCTGCGTCATGTGGACGACCGGGCTCACCGACCTGCGCGTGTACCCGGAGTTCGGCCAGGACCTCTTCGTCCGCCTCGCCGCCGCAGATCTCGGTTTAACAAGCAAATCTAACAAGGCACGTGTAATAATCGCCATCGTTGTCAGCATCTCATCGGTGACGTTTCTGTCAGTTCTCGCTGGTTTTCTCGTCTGGACAAGAAAGAAGAAGAGAGCAAGAAAAACCGGATCAAGCAAATGGAGCGGTGGTTCCCGCAGTACTGGTCGCCGCTATGAAGGAAGCAGTCATCACGATGATGATCTGGAACTTCCAATCTTTGATCTGGGGACAATTGCAGCTGCTACTGATGGTTTCTCAATCAACAACAAGCTCGGTGAGGGTGGCTTCGGACCAGTATACAAGGGTAAGCTCGAGGATGGACAAGAAATAGCAGTTAAAACGTTGTCCAAAACATCCGTACAGGGTCTCGACGAATTCAAGAATGAGGTAATGTTGATAGCTAAACTTCAGCATAGGAATCTTGTTCGGCTTCTCGGCTTCAGCATTAGTGGACAAGAAAGGATACTTGTGTACGAATACATGGCAAACAAGAGCCTAGACTACTTTCTGTTCGCGCGATACCGTATAATAGAAGGCATTACTAGAGGTTTACTATATCTTCACCAGGATTCAAGATACAGAATCATCCACAGAGACCTGAAGGCAAGTAATGTTCTTCTTGACAAGGAGATGACTCCCAAAATTTCTGACTTTGGCATGGCAAGAATGTTTGGAAGTGAAGAGACAGAAATCAATACCAGAAAAGTGGTCGGCACATATGGCTATATGTCTCCAGAATATGCAATGGACGGAGTCTTTTCTGTCAAATCAGATGTATTTAGTTTTGGAGTTTTACTACTGGAAATAATTAGTGGCAGGAGGAACAGAGGGGTTTATTCATATTCAAACCACCTAAATCTTCTGGGACATGCATGGAGCTTATGGAATGAAGGAAAAAGCTTGGAGTTAGCAGATGAAACAATGAATGGCTCGTTCGACTCAGATGAAGTACTCAAATGCATCAGAGTGGGACTCCTATGTGTGCAAGAGAACCCAGATGACCGTCCATTGATGTCTCAGGTGCTTCTGATGTTAGCTACGACAGATGCTACCACATTGCCAACTCCTAAACAGCCTGGCTTTGCAGCTAGAAGAATTCTAATGGAAACAGACACATCATCAAGCAAGCCAGACTGCAGCATATTCGACAGTGCAACAGTTACTATACTTGAAGGTCGATAG
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| Protein seq | MASSSPLCCYLLLFVVVVVLTGSCRARDTVVPGRPLAANETLVSGGDANFVLGFFTPPGANSTYVGVWYNKVSVRTVVWVANREDPLPGDVADNPDATLSVSPTGTLAIVAGNSTVVWSVTPAAKLASPTARIMDSGNLVIADGAGGGVAWQGFDYPTDTLLPEMRLGVDYVKGRNRTLTAWKSPSDPSPGPVVMAMDTSGDPQVFIWNGAEKVWRSGPWDGVQFTGVPDTVTYSGFTFSFINNAKEVTYSFQVHNVSIISRLGLNSTGSYGLLQRSTWVEAAGTWNLYWYAPKDQCDEVSPCGANGVCDTNNLPVCSCLRGFTPKSPEAWALRDGRAGCVRSTPLDCQNGTDGFVAVEHAKVPDTERSVVDLGLSLEQCRKACLMNCSCTAYASANVSGGGRGHGAGTGCVMWTTGLTDLRVYPEFGQDLFVRLAAADLGLTSKSNKARVIIAIVVSISSVTFLSVLAGFLVWTRKKKRARKTGSSKWSGGSRSTGRRYEGSSHHDDDLELPIFDLGTIAAATDGFSINNKLGEGGFGPVYKGKLEDGQEIAVKTLSKTSVQGLDEFKNEVMLIAKLQHRNLVRLLGFSISGQERILVYEYMANKSLDYFLFARYRIIEGITRGLLYLHQDSRYRIIHRDLKASNVLLDKEMTPKISDFGMARMFGSEETEINTRKVVGTYGYMSPEYAMDGVFSVKSDVFSFGVLLLEIISGRRNRGVYSYSNHLNLLGHAWSLWNEGKSLELADETMNGSFDSDEVLKCIRVGLLCVQENPDDRPLMSQVLLMLATTDATTLPTPKQPGFAARRILMETDTSSSKPDCSIFDSATVTILEGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0784700 | OsNip_01t0784700-01 | Chr01 | 33248739 | 33256691 | - | IsoSeq | ||
| CDS seq | ATGAAGGAAGCAGTCATCACGATGATGATCTGGAACTTCCAATCTTTGATCTGGGGACAATTGCAGCTGCTACTGATGGTTTCTCAATCAACAACAAGCTCGGTGAGGGTGGCTTCGGACCAGTATACAAGGGTAAGCTCGAGGATGGACAAG |
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| Protein seq | MKEAVITMMIWNFQSLIWGQLQLLLMVSQSTTSSVRVASDQYTRVSSRMDK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 33249820 | 33249938 | - | OsNip_01t0784700-01 | OsNip_01t0784700-00,OsNip_01t0784700-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.725814 | 6.668283 | 0.207914 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0501400 | RBH | 0.257826 | 0.090645 | 0.866289 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g57560 | RBH | 3.773769 | 3.996663 | 0.112448 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0784700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036070 | RBH | 0.845909 | 0.0 | 0.126390 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035580 | RBH | 0.283640 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035950 | RBH | 1.974087 | 0.0 | 0.729463 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035350 | RBH | 0.292061 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035090 | RBH | 2.435644 | 0.0 | 0.474896 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0549200 | RBH | 5.296898 | 0.47691 | 0.4335855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0034840 | RBH | 0.510459 | 0.0 | 0.272726 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0544700 | SBH | 1.913439 | 9.951241 | 15.4374875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0034960 | RBH | 0.173435 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035020 | RBH | 0.961971 | 1.043178 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0035250 | RBH | 2.124526 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0035330 | RBH | 2.203013 | 0.052616 | 0.533203 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0035150 | RBH | 0.745100 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G035640 | RBH | 0.587010 | 0.0 | 0.259128 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0035290 | RBH | 1.777764 | 0.000000 | 0.270416 |
