Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0648200 | OGI:04004540 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:32976317-32977691 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTTCAGGAGAATTGCCTAATTGCTTGCTCACTGAATATCCTATACTGACAACCTTGAAGGTCTCAAACAACAAACTTGGTGGCCCCATATTTGGTGGTACGAATCATTTGTCGATCAAACATGCATTATACCTTGATGGCAACAAATTTGAAGGAACACTGCCGCGATATCTAACAGCAGATTTCGATGCTCATGGAACATTGGATTTGCATGACAATAATTTATCAGGTAAACTCGATTTTTCACAATGGAACCTTTCCACTTTATGCACCTTGAGTCTTGCGGGCAATAGTCTAATCGGTGAAATCCATCCAAGCATTTGCAATTTGACAAGAATTATGCTTTTGGATCTATCTCATAACAACCTTTCAGGGGCTATACCAAACTGTATGACCGCATTAGAGCTTGATTTTTTTATCGTCTCTCATAATTCTTTGTCCGGACATATAGTACCTTTTTCTTTCTTCAATAGCTCTACTGTCATGGCTTTGGATCTCAGTCACAACCAATTCAACGGAAACATTGAATGGGTACAATATCTAGGTGAAAGTAAGTACCTTTCACTGGGCAGCAACAAGTTTGAAGGGCAGATATCTCCCAGCCTTTGTCAGCTCCAGTCTTTAAGGATACTTGATTTCTCACACAACAGTCTATCAGGGCCATTGCCATCATGTATTGGAAACCTCTCATTTGGACAAAATCCAGTTGGTATCCCTTTATGGTCGCTAATCTGTGAGAATCACTTTAGGTACCCAATTTTCGATTACATCGGATGCTATGAAGAAAGAGGCTTCAGCTTCCGTACTAAAGGCAACATTTACATATACAAACACAATTTCATCAATTGGATGTCTGGCATCGACTTATCTGCAAACATGTTGTCTGGACAAATTCCCAGGGAGTTGGGAAATCTGGGACATATCAAGGCCCTCAATCTGTCCTACAATTTCTTTGCCGGACCAATCCCAGCAACCTTTGCAAGCATGAGTTCAGTTGAAAGCTTAGACCTATCCCACAACAAGCTGAGTGGAGCAATACCATGGCAGTTAACTCGTTTGTCATCACTGTCCGTGTTCTCAGTGATGTACAACAACTTATCAGGATGTATACCAAACTCTGGTCAGTTCGGCTCATTTGATATGGATAGCTACCAAGGAAACAACCTCCTACACCCAGCGTCAGAAGGGAGCGAGTGTGCTCCCAGTTCAGGTCATTCGCTACCGGATGATGGAGATGGAAAGGGAAATGATCCAATCCTTTACGCGGTCACTGCTGCCTCGTTCGTAGTGACATTTTGGATTACTTTCGCATTCACAAGCTTCCGAATGTAGAGCTTCAGATTTTTTAATACTTACTTTGTCCTATTTTAAGCGC
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| CDS seq | CTTTCAGGAGAATTGCCTAATTGCTTGCTCACTGAATATCCTATACTGACAACCTTGAAGGTCTCAAACAACAAACTTGGTGGCCCCATATTTGGTGGTACGAATCATTTGTCGATCAAACATGCATTATACCTTGATGGCAACAAATTTGAAGGAACACTGCCGCGATATCTAACAGCAGATTTCGATGCTCATGGAACATTGGATTTGCATGACAATAATTTATCAGGTAAACTCGATTTTTCACAATGGAACCTTTCCACTTTATGCACCTTGAGTCTTGCGGGCAATAGTCTAATCGGTGAAATCCATCCAAGCATTTGCAATTTGACAAGAATTATGCTTTTGGATCTATCTCATAACAACCTTTCAGGGGCTATACCAAACTGTATGACCGCATTAGAGCTTGATTTTTTTATCGTCTCTCATAATTCTTTGTCCGGACATATAGTACCTTTTTCTTTCTTCAATAGCTCTACTGTCATGGCTTTGGATCTCAGTCACAACCAATTCAACGGAAACATTGAATGGGTACAATATCTAGGTGAAAGTAAGTACCTTTCACTGGGCAGCAACAAGTTTGAAGGGCAGATATCTCCCAGCCTTTGTCAGCTCCAGTCTTTAAGGATACTTGATTTCTCACACAACAGTCTATCAGGGCCATTGCCATCATGTATTGGAAACCTCTCATTTGGACAAAATCCAGTTGGTATCCCTTTATGGTCGCTAATCTGTGAGAATCACTTTAGGTACCCAATTTTCGATTACATCGGATGCTATGAAGAAAGAGGCTTCAGCTTCCGTACTAAAGGCAACATTTACATATACAAACACAATTTCATCAATTGGATGTCTGGCATCGACTTATCTGCAAACATGTTGTCTGGACAAATTCCCAGGGAGTTGGGAAATCTGGGACATATCAAGGCCCTCAATCTGTCCTACAATTTCTTTGCCGGACCAATCCCAGCAACCTTTGCAAGCATGAGTTCAGTTGAAAGCTTAGACCTATCCCACAACAAGCTGAGTGGAGCAATACCATGGCAGTTAACTCGTTTGTCATCACTGTCCGTGTTCTCAGTGATGTACAACAACTTATCAGGATGTATACCAAACTCTGGTCAGTTCGGCTCATTTGATATGGATAGCTACCAAGGAAACAACCTCCTACACCCAGCGTCAGAAGGGAGCGAGTGTGCTCCCAGTTCAGGTCATTCGCTACCGGATGATGGAGATGGAAAGGGAAATGATCCAATCCTTTACGCGGTCACTGCTGCCTCGTTCGTAGTGACATTTTGGATTACTTTCGCATTCACAAGCTTCCGAATGTAG
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| Protein seq | LSGELPNCLLTEYPILTTLKVSNNKLGGPIFGGTNHLSIKHALYLDGNKFEGTLPRYLTADFDAHGTLDLHDNNLSGKLDFSQWNLSTLCTLSLAGNSLIGEIHPSICNLTRIMLLDLSHNNLSGAIPNCMTALELDFFIVSHNSLSGHIVPFSFFNSSTVMALDLSHNQFNGNIEWVQYLGESKYLSLGSNKFEGQISPSLCQLQSLRILDFSHNSLSGPLPSCIGNLSFGQNPVGIPLWSLICENHFRYPIFDYIGCYEERGFSFRTKGNIYIYKHNFINWMSGIDLSANMLSGQIPRELGNLGHIKALNLSYNFFAGPIPATFASMSSVESLDLSHNKLSGAIPWQLTRLSSLSVFSVMYNNLSGCIPNSGQFGSFDMDSYQGNNLLHPASEGSECAPSSGHSLPDDGDGKGNDPILYAVTAASFVVTFWITFAFTSFRM |
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| Function | Receptor-like protein 45 [UniProtKB/Swiss-Prot:F4J9A8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0648200 | OsNip_04t0648200-01 | Chr04 | 32976317 | 32977691 | + | RAP2018-11-26 | ||
| CDS seq | CTTTCAGGAGAATTGCCTAATTGCTTGCTCACTGAATATCCTATACTGACAACCTTGAAGGTCTCAAACAACAAACTTGGTGGCCCCATATTTGGTGGTACGAATCATTTGTCGATCAAACATGCATTATACCTTGATGGCAACAAATTTGAAGGAACACTGCCGCGATATCTAACAGCAGATTTCGATGCTCATGGAACATTGGATTTGCATGACAATAATTTATCAGGTAAACTCGATTTTTCACAATGGAACCTTTCCACTTTATGCACCTTGAGTCTTGCGGGCAATAGTCTAATCGGTGAAATCCATCCAAGCATTTGCAATTTGACAAGAATTATGCTTTTGGATCTATCTCATAACAACCTTTCAGGGGCTATACCAAACTGTATGACCGCATTAGAGCTTGATTTTTTTATCGTCTCTCATAATTCTTTGTCCGGACATATAGTACCTTTTTCTTTCTTCAATAGCTCTACTGTCATGGCTTTGGATCTCAGTCACAACCAATTCAACGGAAACATTGAATGGGTACAATATCTAGGTGAAAGTAAGTACCTTTCACTGGGCAGCAACAAGTTTGAAGGGCAGATATCTCCCAGCCTTTGTCAGCTCCAGTCTTTAAGGATACTTGATTTCTCACACAACAGTCTATCAGGGCCATTGCCATCATGTATTGGAAACCTCTCATTTGGACAAAATCCAGTTGGTATCCCTTTATGGTCGCTAATCTGTGAGAATCACTTTAGGTACCCAATTTTCGATTACATCGGATGCTATGAAGAAAGAGGCTTCAGCTTCCGTACTAAAGGCAACATTTACATATACAAACACAATTTCATCAATTGGATGTCTGGCATCGACTTATCTGCAAACATGTTGTCTGGACAAATTCCCAGGGAGTTGGGAAATCTGGGACATATCAAGGCCCTCAATCTGTCCTACAATTTCTTTGCCGGACCAATCCCAGCAACCTTTGCAAGCATGAGTTCAGTTGAAAGCTTAGACCTATCCCACAACAAGCTGAGTGGAGCAATACCATGGCAGTTAACTCGTTTGTCATCACTGTCCGTGTTCTCAGTGATGTACAACAACTTATCAGGATGTATACCAAACTCTGGTCAGTTCGGCTCATTTGATATGGATAGCTACCAAGGAAACAACCTCCTACACCCAGCGTCAGAAGGGAGCGAGTGTGCTCCCAGTTCAGGTCATTCGCTACCGGATGATGGAGATGGAAAGGGAAATGATCCAATCCTTTACGCGGTCACTGCTGCCTCGTTCGTAGTGACATTTTGGATTACTTTCGCATTCACAAGCTTCCGAATGTAG
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| Protein seq | LSGELPNCLLTEYPILTTLKVSNNKLGGPIFGGTNHLSIKHALYLDGNKFEGTLPRYLTADFDAHGTLDLHDNNLSGKLDFSQWNLSTLCTLSLAGNSLIGEIHPSICNLTRIMLLDLSHNNLSGAIPNCMTALELDFFIVSHNSLSGHIVPFSFFNSSTVMALDLSHNQFNGNIEWVQYLGESKYLSLGSNKFEGQISPSLCQLQSLRILDFSHNSLSGPLPSCIGNLSFGQNPVGIPLWSLICENHFRYPIFDYIGCYEERGFSFRTKGNIYIYKHNFINWMSGIDLSANMLSGQIPRELGNLGHIKALNLSYNFFAGPIPATFASMSSVESLDLSHNKLSGAIPWQLTRLSSLSVFSVMYNNLSGCIPNSGQFGSFDMDSYQGNNLLHPASEGSECAPSSGHSLPDDGDGKGNDPILYAVTAASFVVTFWITFAFTSFRM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g55440 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0648200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0028790 | RBH | 0.140377 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0029570 | RBH | 0.000000 | 0.147078 | 0.258064 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0029150 | SBH | 0.000000 | 0.890891 | 0.561121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0028980 | RBH | 0.034978 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0029260 | RBH | 0.668100 | 1.206926 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0519900 | RBH | 0.2527125 | 1.349375 | 0.41431 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0027900 | RBH | 0.032375 | 0.000000 | 0.124839 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0525000 | RBH | 0.8954085 | 2.5295235 | 2.2227805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0028340 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028170 | RBH | 0.000000 | 1.023362 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0028280 | RBH | 0.000000 | 1.509230 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0028880 | RBH | 0.085733 | 0.000000 | 0.031503 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0028850 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028260 | RBH | 0.647105 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0028080 | SBH | 0.355491 | 2.867533 | 0.443310 |
