Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0633600 | OGI:04027370 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:32239057-32242134 | ||||||||
| Gene Symbol | RLCK379, OsRLCK379, RLCK164, OsRLCK164, SDK14 | ||||||||||
| DNA seq | ATGCTCATCTCCAAAGGTGGAGACTTTGCGCTCGGATTCTTCTCCCCGGCCACCTCCAACCAGAGCTTATTCCTTGGTATATGGTATCACAATATCTCCGAGCGCACCTATGTTTGGGTTGCCAACCGCGACGACCCGATCGCTGCATCTTCATCCGCGACGCTCTCCATCAGCAACAATTCTGCTCTTGTATTGTCAGATTCCAAAGGCCGCACCCTATGGACGACGATGGCAAGTCCCAACAGTATTGTCACCGAAGACGACGGAGTTTACGCGGTGCTGCTCGACTCAGGAAATTTGGTTCTTCGGCTATCGAACAATACAACCATATGGCAAAGCTTTGATCAACCAACTGATACCATTCTGCCCAACATGAAGTTTTTAGTGAGATCCTACGGACAAGTCGCCATGCGGTTCATCGCTTGGAAGGGCCCAGATGACCCATCCACCGGGGATTTCTCCTTCAGCGGCGATCCCACGTCAAACTTTCAGATCTTCATCTGGCACGAGACAAGGCCATATTACCGTTTCATTCTGTTTGATAGTGTCTCGGTGTCCGGTGCAACATACTTGCACAACAGCACCTCTTTTGTCTATAAAACAGTCGTGAACACTAAGGATGAGTTTTACCTCAAGTACACAATCTCTGATGATTCACCATACACGCGCGTCATGATTGACTACATGGGCAACTTTAGGTTCATGAGTTGGAACAGCAGCTTGTCCTCATGGACTGTCGCAAATCAACTCCCAAGGGCCCCTGGCTGCGATACCTATGGCTCGTGTGGCCCATTCGGCTACTGCGACCTCACGTCGGCCGTCCCAAGTTGCCAATGCCTCGATGGGTTTGAGCCTGTTGGCTCCAATTCTTCTTCAGGATGCCGGAGAAAGCAACAATTGAGATGTGGAGATGACCATTTTGTGATCATGTCTAGAATGAAGGTTCCTGACAAGTTCTTGCATGTCCAGAACAGAAACTTCGACGAGTGCACGGACGAGTGTACCCGCAACTGCTCGTGCACGGCCTACGCCTACACCAACTTGACCGCAACCGGCACCATGTCCAACCAGCCAAGGTGTTTGCTTTGGACAGGGGAGCTTGCCGACGCGTGGAGGGACATCAGGAACACCATTGCTGAGAACCTGTACCTCCGGTTGGCCGATTCTACTGGTATGCCCACCCTTTTTCCCCTGCGACGATAGAATAGCTCTTAGATTAGCAGTCCTGAATTTTGTTCACTTGTGTTGATAGGACACACTTCAAACTCAACAGAAAGAAAAAAGAATCTAGTGAAGGTGGTAGTCTAAATTTAGCATGCCTGTTTTTGAACACGACCACCAGGTTACTATCTCCCACAAGCTTGCAAGCTACTGTATGTTTGACGCTGTAACTTCTGTTCACCCACATTCTTCACAGGGTCAAATTCTACAGTAAACAGAAAGAAGAAGAGGCACATGGTGGTAAATATTGTACTCCCAGCTATAGTGTGCCTACTAATACTCACAGCGTGCATATATCTTGTCAGTAAATGCAAGTCAAGAGGTACTATAAGCAGTAGGACCTGCTTAATTGCAAAGCGTGCATATATCTTGTCAGTAACTGTAAGTATTGACATTGTTGATTTTACTATAAGGCGTCCGACAAAACAAGGAAAAAACGAAAAGACCTGTCATTCAACAGTTGAGCACTATTCATGATTTGTGGGATCAAAATCTGGAATTTCCATGTATTAGCTTTGAAGACATCACTGCTGCAACAGACAGTTTCCATGACACCAACATGCTTGGAAAAGGAGGTTTTGGCAAAGTATATAAGGTGATATATAATTTTACCTTGTCATTCTGTCAATGATATGAGGAATAGCGATGTCATTTACTCCTATTACTTTAATAATGATGAAATCACACAGGGAACATTGGAGGATGGCAAGGAAATTGCTGTTAAAAGGCTCAGCAAGTGTTCTGAGCAAGGGATGGAGCAGTTCAGAAATGAACTGGTTCTTATTGCCAAACTGCAACACAAAAACTTAGTTAGACTTCTTGGTTGCTGTATTCATGGAGATGAGAAGCTGCTTATTTACGAATACTTGCCCAACAAAAGCTTAGATAAATTCCTTTTCAGTATGTTCGACCAATCCAAAGAAATACTCTTGCTTGGTTAATTATTTGTTTGATTCTACTATCCTAACTGTGTTCTGGGCAGATCATACAACAGAGGCTACACTTGATTGGCTGACAAGGTTCAACATTATCAAAGGGGTAGCAAGAGGACTTCTTTATCTCCATCAAGATTCAAGAATGAAGATAATTCATAGAGATCTCAAAGCAAGCAACATACTGCTCGATGGAGAGATGAACCCCAAAATATCGGATTTTGGTATGGCGAGGATATTTGGAGGCAATGAGCAACAAGAAAGTACTAGACGAGTTGTTGGGACATAGTAAGTAACTTCTGCTCTTGCCAACCAAAATTATTCAAATACCCAGGTTCTGGAAATTATTAAACTTCTTTCTTATTCAAATAGTGGTTACATGTCACCTGAATATGCAATGGAAGGCACCTTTTCAGTCAAGTCCGACACATATAGCTTTGGTATTTTGCTTCTAGAAATTGTAAGTGGATTAAAGATCAGCTCACCTCATCATCTTGTGATGGATTTTCCAAACCTTATAGCTTACGTAAGTGTTGCCGGTACCCAATGCTTCAAAATTTAACAATCAAAGAACAAACATAACATTGCCAGAACAAATATTGAAGTTATTCTCTTGTTTCAGGCATGGAACTTATGGAAAGATGGAAGACAAAGGGATTTTGTGGACAAATCAATTTTGGAGAGCTGTTCCCTCAGCGAAGTTTTTAAATGCATCCATATTGGACTCATGTGTGTTCAGGACAGCCCAAATGCTAGGCCACTGATGTCATTCGTTGTGTCTATGCTGGAGAACGAGGACATGCCACACCCAATTCCAACACAACCTATATATTTTGTGCAGAGGCATTATGAATCAGAAGAACCAAGAGAATACTCAGATAAATCTGTTAATAATGTGAGTCTGACTATACTAGAAGGCCGCTGA
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| CDS seq | ATGCTCATCTCCAAAGGTGGAGACTTTGCGCTCGGATTCTTCTCCCCGGCCACCTCCAACCAGAGCTTATTCCTTGGTATATGGTATCACAATATCTCCGAGCGCACCTATGTTTGGGTTGCCAACCGCGACGACCCGATCGCTGCATCTTCATCCGCGACGCTCTCCATCAGCAACAATTCTGCTCTTGTATTGTCAGATTCCAAAGGCCGCACCCTATGGACGACGATGGCAAGTCCCAACAGTATTGTCACCGAAGACGACGGAGTTTACGCGGTGCTGCTCGACTCAGGAAATTTGGTTCTTCGGCTATCGAACAATACAACCATATGGCAAAGCTTTGATCAACCAACTGATACCATTCTGCCCAACATGAAGTTTTTAGTGAGATCCTACGGACAAGTCGCCATGCGGTTCATCGCTTGGAAGGGCCCAGATGACCCATCCACCGGGGATTTCTCCTTCAGCGGCGATCCCACGTCAAACTTTCAGATCTTCATCTGGCACGAGACAAGGCCATATTACCGTTTCATTCTGTTTGATAGTGTCTCGGTGTCCGGTGCAACATACTTGCACAACAGCACCTCTTTTGTCTATAAAACAGTCGTGAACACTAAGGATGAGTTTTACCTCAAGTACACAATCTCTGATGATTCACCATACACGCGCGTCATGATTGACTACATGGGCAACTTTAGGTTCATGAGTTGGAACAGCAGCTTGTCCTCATGGACTGTCGCAAATCAACTCCCAAGGGCCCCTGGCTGCGATACCTATGGCTCGTGTGGCCCATTCGGCTACTGCGACCTCACGTCGGCCGTCCCAAGTTGCCAATGCCTCGATGGGTTTGAGCCTGTTGGCTCCAATTCTTCTTCAGGATGCCGGAGAAAGCAACAATTGAGATGTGGAGATGACCATTTTGTGATCATGTCTAGAATGAAGGTTCCTGACAAGTTCTTGCATGTCCAGAACAGAAACTTCGACGAGTGCACGGACGAGTGTACCCGCAACTGCTCGTGCACGGCCTACGCCTACACCAACTTGACCGCAACCGGCACCATGTCCAACCAGCCAAGGTGTTTGCTTTGGACAGGGGAGCTTGCCGACGCGTGGAGGGACATCAGGAACACCATTGCTGAGAACCTGTACCTCCGGTTGGCCGATTCTACTGACATCACTGCTGCAACAGACAGTTTCCATGACACCAACATGCTTGGAAAAGGAGGTTTTGGCAAAGTATATAAGGGAACATTGGAGGATGGCAAGGAAATTGCTGTTAAAAGGCTCAGCAAGTGTTCTGAGCAAGGGATGGAGCAGTTCAGAAATGAACTGGTTCTTATTGCCAAACTGCAACACAAAAACTTAGTTAGACTTCTTGGTTGCTGTATTCATGGAGATGAGAAGCTGCTTATTTACGAATACTTGCCCAACAAAAGCTTAGATAAATTCCTTTTCAATCATACAACAGAGGCTACACTTGATTGGCTGACAAGGTTCAACATTATCAAAGGGGTAGCAAGAGGACTTCTTTATCTCCATCAAGATTCAAGAATGAAGATAATTCATAGAGATCTCAAAGCAAGCAACATACTGCTCGATGGAGAGATGAACCCCAAAATATCGGATTTTGGTATGGCGAGGATATTTGGAGGCAATGAGCAACAAGAAAGTACTAGACGAGTTGCATGGAACTTATGGAAAGATGGAAGACAAAGGGATTTTGTGGACAAATCAATTTTGGAGAGCTGTTCCCTCAGCGAAGTTTTTAAATGCATCCATATTGGACTCATGTGTGTTCAGGACAGCCCAAATGCTAGGCCACTGATGTCATTCGTTGTGTCTATGCTGGAGAACGAGGACATGCCACACCCAATTCCAACACAACCTATATATTTTGTGCAGAGGCATTATGAATCAGAAGAACCAAGAGAATACTCAGATAAATCTGTTAATAATGTGAGTCTGACTATACTAGAAGGCCGCTGA
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| Protein seq | MLISKGGDFALGFFSPATSNQSLFLGIWYHNISERTYVWVANRDDPIAASSSATLSISNNSALVLSDSKGRTLWTTMASPNSIVTEDDGVYAVLLDSGNLVLRLSNNTTIWQSFDQPTDTILPNMKFLVRSYGQVAMRFIAWKGPDDPSTGDFSFSGDPTSNFQIFIWHETRPYYRFILFDSVSVSGATYLHNSTSFVYKTVVNTKDEFYLKYTISDDSPYTRVMIDYMGNFRFMSWNSSLSSWTVANQLPRAPGCDTYGSCGPFGYCDLTSAVPSCQCLDGFEPVGSNSSSGCRRKQQLRCGDDHFVIMSRMKVPDKFLHVQNRNFDECTDECTRNCSCTAYAYTNLTATGTMSNQPRCLLWTGELADAWRDIRNTIAENLYLRLADSTDITAATDSFHDTNMLGKGGFGKVYKGTLEDGKEIAVKRLSKCSEQGMEQFRNELVLIAKLQHKNLVRLLGCCIHGDEKLLIYEYLPNKSLDKFLFNHTTEATLDWLTRFNIIKGVARGLLYLHQDSRMKIIHRDLKASNILLDGEMNPKISDFGMARIFGGNEQQESTRRVAWNLWKDGRQRDFVDKSILESCSLSEVFKCIHIGLMCVQDSPNARPLMSFVVSMLENEDMPHPIPTQPIYFVQRHYESEEPREYSDKSVNNVSLTILEGR |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [UniProtKB/Swiss-Prot:O81832] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0633600 | OsNip_04t0633600-00 | Chr04 | 32239057 | 32242134 | + | RAP2018-11-26 | ||
| CDS seq | ATGCTCATCTCCAAAGGTGGAGACTTTGCGCTCGGATTCTTCTCCCCGGCCACCTCCAACCAGAGCTTATTCCTTGGTATATGGTATCACAATATCTCCGAGCGCACCTATGTTTGGGTTGCCAACCGCGACGACCCGATCGCTGCATCTTCATCCGCGACGCTCTCCATCAGCAACAATTCTGCTCTTGTATTGTCAGATTCCAAAGGCCGCACCCTATGGACGACGATGGCAAGTCCCAACAGTATTGTCACCGAAGACGACGGAGTTTACGCGGTGCTGCTCGACTCAGGAAATTTGGTTCTTCGGCTATCGAACAATACAACCATATGGCAAAGCTTTGATCAACCAACTGATACCATTCTGCCCAACATGAAGTTTTTAGTGAGATCCTACGGACAAGTCGCCATGCGGTTCATCGCTTGGAAGGGCCCAGATGACCCATCCACCGGGGATTTCTCCTTCAGCGGCGATCCCACGTCAAACTTTCAGATCTTCATCTGGCACGAGACAAGGCCATATTACCGTTTCATTCTGTTTGATAGTGTCTCGGTGTCCGGTGCAACATACTTGCACAACAGCACCTCTTTTGTCTATAAAACAGTCGTGAACACTAAGGATGAGTTTTACCTCAAGTACACAATCTCTGATGATTCACCATACACGCGCGTCATGATTGACTACATGGGCAACTTTAGGTTCATGAGTTGGAACAGCAGCTTGTCCTCATGGACTGTCGCAAATCAACTCCCAAGGGCCCCTGGCTGCGATACCTATGGCTCGTGTGGCCCATTCGGCTACTGCGACCTCACGTCGGCCGTCCCAAGTTGCCAATGCCTCGATGGGTTTGAGCCTGTTGGCTCCAATTCTTCTTCAGGATGCCGGAGAAAGCAACAATTGAGATGTGGAGATGACCATTTTGTGATCATGTCTAGAATGAAGGTTCCTGACAAGTTCTTGCATGTCCAGAACAGAAACTTCGACGAGTGCACGGACGAGTGTACCCGCAACTGCTCGTGCACGGCCTACGCCTACACCAACTTGACCGCAACCGGCACCATGTCCAACCAGCCAAGGTGTTTGCTTTGGACAGGGGAGCTTGCCGACGCGTGGAGGGACATCAGGAACACCATTGCTGAGAACCTGTACCTCCGGTTGGCCGATTCTACTGACATCACTGCTGCAACAGACAGTTTCCATGACACCAACATGCTTGGAAAAGGAGGTTTTGGCAAAGTATATAAGGGAACATTGGAGGATGGCAAGGAAATTGCTGTTAAAAGGCTCAGCAAGTGTTCTGAGCAAGGGATGGAGCAGTTCAGAAATGAACTGGTTCTTATTGCCAAACTGCAACACAAAAACTTAGTTAGACTTCTTGGTTGCTGTATTCATGGAGATGAGAAGCTGCTTATTTACGAATACTTGCCCAACAAAAGCTTAGATAAATTCCTTTTCAATCATACAACAGAGGCTACACTTGATTGGCTGACAAGGTTCAACATTATCAAAGGGGTAGCAAGAGGACTTCTTTATCTCCATCAAGATTCAAGAATGAAGATAATTCATAGAGATCTCAAAGCAAGCAACATACTGCTCGATGGAGAGATGAACCCCAAAATATCGGATTTTGGTATGGCGAGGATATTTGGAGGCAATGAGCAACAAGAAAGTACTAGACGAGTTGCATGGAACTTATGGAAAGATGGAAGACAAAGGGATTTTGTGGACAAATCAATTTTGGAGAGCTGTTCCCTCAGCGAAGTTTTTAAATGCATCCATATTGGACTCATGTGTGTTCAGGACAGCCCAAATGCTAGGCCACTGATGTCATTCGTTGTGTCTATGCTGGAGAACGAGGACATGCCACACCCAATTCCAACACAACCTATATATTTTGTGCAGAGGCATTATGAATCAGAAGAACCAAGAGAATACTCAGATAAATCTGTTAATAATGTGAGTCTGACTATACTAGAAGGCCGCTGA
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| Protein seq | MLISKGGDFALGFFSPATSNQSLFLGIWYHNISERTYVWVANRDDPIAASSSATLSISNNSALVLSDSKGRTLWTTMASPNSIVTEDDGVYAVLLDSGNLVLRLSNNTTIWQSFDQPTDTILPNMKFLVRSYGQVAMRFIAWKGPDDPSTGDFSFSGDPTSNFQIFIWHETRPYYRFILFDSVSVSGATYLHNSTSFVYKTVVNTKDEFYLKYTISDDSPYTRVMIDYMGNFRFMSWNSSLSSWTVANQLPRAPGCDTYGSCGPFGYCDLTSAVPSCQCLDGFEPVGSNSSSGCRRKQQLRCGDDHFVIMSRMKVPDKFLHVQNRNFDECTDECTRNCSCTAYAYTNLTATGTMSNQPRCLLWTGELADAWRDIRNTIAENLYLRLADSTDITAATDSFHDTNMLGKGGFGKVYKGTLEDGKEIAVKRLSKCSEQGMEQFRNELVLIAKLQHKNLVRLLGCCIHGDEKLLIYEYLPNKSLDKFLFNHTTEATLDWLTRFNIIKGVARGLLYLHQDSRMKIIHRDLKASNILLDGEMNPKISDFGMARIFGGNEQQESTRRVAWNLWKDGRQRDFVDKSILESCSLSEVFKCIHIGLMCVQDSPNARPLMSFVVSMLENEDMPHPIPTQPIYFVQRHYESEEPREYSDKSVNNVSLTILEGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.188416 | 0.343982 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0633300 | SBH | 0.505879 | 0.092444 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g54110 | RBH | 0.122601 | 0.372555 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0633600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027890 | RBH | 0.000000 | 0.0 | 0.836688 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028660 | RBH | 0.059146 | 0.0 | 0.893469 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028230 | SBH | 0.369437 | 0.739790 | 2.057186 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0028030 | SBH | 0.031282 | 0.013722 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028290 | RBH | 28.615248 | 3.884939 | 5.803555 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0508000 | RBH | 0.2074425 | 0.4359805 | 0.457304 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026980 | SBH | 0.129210 | 0.011754 | 0.285752 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0510900 | SBH | 3.4301045 | 2.6218555 | 4.6655365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027440 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027330 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027940 | RBH | 0.265236 | 0.0 | 0.213751 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027880 | SBH | 0.0 | 0.604004 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027290 | RBH | 0.343259 | 0.0 | 0.378354 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027190 | RBH | 0.000000 | 0.0 | 0.181934 |
