Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0506100 | OGI:04080300 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:25253913-25254615 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGCAAAAGGGCATTGCCCTGACTAGAACATATATAAATACATCATAAGTTATCCTTCTTTGAAGAATGATCAGAAGCAGGCGAGGATGAAGAGCTCATCCTGGCCCTATCTCTAGACTCACTTAACATAACTACAACATTCCGCATCGGTGGTCTGTCATATGGAGACATACTAGTACATAGCAATGCAATTTTCAAGACCTCAATCATATGATCGACAGACGTTTTGTCTTCCAAATTCAGATTCTTATCAAGAATCCCTGGACCCAAAGAATTGTCCCTGATGTAATTCTTTACCCATGTTACCAGATCACCTCCCAGTTCTAATGGTTGTACAGGGGCACGTCCGGTTAGCAGCTCCAGCAGTACGACGCCGTAACTGTATATGTCACTTTTTTCAGTAACCTTCATGGTGTATGCATATTCTGATCAAAGGAGAACTAGGTTAGTACTTTGTAGGAAACAATCACATGTACTTTCTGCTAGTATAAAGCAATCAAGTGGTATAGTAGCCTAGGATTTTACAAGCAATTTCAAGTAAAAGAGATAAGAGCTATAACAGGAATAAGTATGCAAAGTAACAGTAGAAGACTCACCAGGTGCTATATATCCATATGAACCAGCAATTGCAGACATTGATTTTGAGTATGGCATGTCTATCACCTTTGCCAATCCAAAGTCACCAACATGAGCTTCAAAGTTC
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| CDS seq | AACTTTGAAGCTCATGTTGGTGACTTTGGATTGGCAAAGGTGATAGACATGCCATACTCAAAATCAATGTCTGCAATTGCTGGTTCATATGGATATATAGCACCTGAATATGCATACACCATGAAGGTTACTGAAAAAAGTGACATATACAGTTACGGCGTCGTACTGCTGGAGCTGCTAACCGGACGTGCCCCTGTACAACCATTAGAACTGGGAGGTGATCTGGTAACATGGGTAAAGAATTACATCAGGGACAATTCTTTGGGTCCAGGGATTCTTGATAAGAATCTGAATTTGGAAGACAAAACGTCTGTCGATCATATGATTGAGGTCTTGAAAATTGCATTGCTATGTACTAGTATGTCTCCATATGACAGACCACCGATGCGGAATGTTGTAGTTATGTTAAGTGAGTCTAGAGATAGGGCCAGGATGAGCTCTTCATCCTCGCCTGCTTCTGATCATTCTTCAAAGAAGGATAACTTATGA
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| Protein seq | NFEAHVGDFGLAKVIDMPYSKSMSAIAGSYGYIAPEYAYTMKVTEKSDIYSYGVVLLELLTGRAPVQPLELGGDLVTWVKNYIRDNSLGPGILDKNLNLEDKTSVDHMIEVLKIALLCTSMSPYDRPPMRNVVVMLSESRDRARMSSSSSPASDHSSKKDNL |
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| Function | Probable leucine-rich repeat receptor-like protein kinase At5g63930 [UniProtKB/Swiss-Prot:Q9LVP0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0506100 | OsNip_04t0506100-01 | Chr04 | 25253913 | 25254615 | - | RAP2018-11-26 | ||
| CDS seq | AACTTTGAAGCTCATGTTGGTGACTTTGGATTGGCAAAGGTGATAGACATGCCATACTCAAAATCAATGTCTGCAATTGCTGGTTCATATGGATATATAGCACCTGAATATGCATACACCATGAAGGTTACTGAAAAAAGTGACATATACAGTTACGGCGTCGTACTGCTGGAGCTGCTAACCGGACGTGCCCCTGTACAACCATTAGAACTGGGAGGTGATCTGGTAACATGGGTAAAGAATTACATCAGGGACAATTCTTTGGGTCCAGGGATTCTTGATAAGAATCTGAATTTGGAAGACAAAACGTCTGTCGATCATATGATTGAGGTCTTGAAAATTGCATTGCTATGTACTAGTATGTCTCCATATGACAGACCACCGATGCGGAATGTTGTAGTTATGTTAAGTGAGTCTAGAGATAGGGCCAGGATGAGCTCTTCATCCTCGCCTGCTTCTGATCATTCTTCAAAGAAGGATAACTTATGA
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| Protein seq | NFEAHVGDFGLAKVIDMPYSKSMSAIAGSYGYIAPEYAYTMKVTEKSDIYSYGVVLLELLTGRAPVQPLELGGDLVTWVKNYIRDNSLGPGILDKNLNLEDKTSVDHMIEVLKIALLCTSMSPYDRPPMRNVVVMLSESRDRARMSSSSSPASDHSSKKDNL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 5.938793 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0623932 | SBH | 3.445422 | 2.975020 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42700 | RBH | 0.082613 | 0.168246 | 0.931966 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0506100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019210 | SBH | 0.250173 | 18.465075 | 7.961412 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019990 | SBH | 0.000000 | 2.878314 | 4.202378 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019710 | SBH | 0.197623 | 7.386014 | 13.799141 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019430 | SBH | 0.087951 | 0.232958 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019630 | RBH | 0.744550 | 15.529775 | 22.004465 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0394600 | SBH | 6.139429 | 32.1948635 | 9.6629515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018440 | RBH | 0.0 | 0.998325 | 1.742027 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0396400 | RBH | 4.3406925 | 25.181985 | 14.2297315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018920 | SBH | 0.003662 | 0.270175 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018770 | SBH | 0.197257 | 27.203178 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018890 | RBH | 0.0 | 9.825073 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019260 | RBH | 0.0 | 2.148421 | 1.735696 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019430 | RBH | 0.0 | 2.872143 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018720 | SBH | 0.283235 | 4.341980 | 3.325762 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018660 | RBH | 0.0 | 24.958294 | 9.204535 |
