Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0429450 | OGI:04063510 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:21279804-21281662 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCGTCGTCGTTGTTGGAGTTATAGACATGTTACTTGAATAATATAGTGTTGTTTCTTGATACATTTTTTTTTGAACGACTCGCACGAGACGGTACGAAGTTCTATTGATAGAGCAGGAAAAAATTACAAGATCACAACCCTAAAGGGTCGTAACCAGGAAAAAGGAAAAATATACCACCACCCACACACCGACAGCTCCAACACACAAGACCGGGAGAAGGCTAACACCGGACCGGCCGCCGCTAAGCTTGACCGACTGCCGCTAGACCAACAAAGAAACATAGATGAGATCGCCCAAAAGAACACCCTCACAACCAATACAAAGCCAACTCCTAGAGTGTGCTTGCACCAATCGATCGAGAGGCTTCGGCTAGGGGATACCAAAACGACGTATTCAAGAAGAGAAGCGATGGTAAACCACCGCCGCCATCCGTCGGGGCTCAAAGGAGCCAGGACTGGGCTTTCGCCCGGCAACCACCCTTGAGGGATGAGACAGCACGACAACACCCTCAAGAGGGGGAATTCCATCGTTGTCGGTCCGGCCATGGCCAGGCTGGGTTTTCACCCGCTGCTCACCACCGGCGAATCCACGGCTGACGCACCAATGCTCCCACCACCCCTCAACCTCTGCCGACATGTGGGACCCCTGCACCGGCGCCCCCTACTGGCTAGCCTTCGAGCGCCGAAGACCGCGTCACATCCATCAGCAGCTCCTCGAACCGAGGTCGCCTCCACTGCCGGCCGCGCCTCTCGCGTCAAGCCGGCCTCCTCCACCGGATGCGCCTCTCGCGCCAATCCGGCCTCCCTCCATCGGCCGCGCCTCTCGCGCCAAGCCGGCCTCCATCTCCTCCGCCCGCGCCTCTCGCGCCGAGCCGGCCTCCGCTGCCATCGGTTGCGCCTCTCTGCGCCAAGCCGGTCTCCAACCCCTCCTCCAAACGCTGCCGCGCCGGCTAGATGCAATCGTCTCCTACACCCTCGGCTAGCCGTCCAAGGCCGCCATACATCCTCCCACCTCAGCCACGGTGATCACCACCATGCCTCCTTCCACCGCAGCCACGTTCGCCACCGTGCCTCCACATTCACAGCCGCTGCAAGCCGGCCGCTGTCGCCGCTGCTGTCACCAACCGCCAACACCAGCCGCCGCCACCGCCAACGCGGCTACTGCCTCGTCGCCCTCCGTCACCACCGCCTCTGCAGTCCTCCGCTGCCGCCATCGCGGCCGTGGACCGCCGTCGCCATCGCCGCCACCGGGGCTGTGGACCTCCGCCGCCTGCCGTCGCCCCGGGAGGACCGGAACCGGCCTCACCCCTAGGCCTTCGCCTTCGCCACATCCGTCCACAGCAGCGCGCATCCATCGCCTCCTTCCGGCCGCCGTCGCCGCGAGGCTCGCCGTCGCTTGGCCCCTGGATGCGGGGAGGCCGGATCCGCCGCCAGGGGAGGCGGATCCACCTCCGGCGTGGCCGGATTCGCCGCGACGACCCCTCGGCGCCGCCTCCCGCGCCGCTGACCGCCGCTCGCTGTTGCTCGGCCCTGGACACGGAGGGGCCAGATCCGCTGCCGGGGGAGACGGATCCGCCTCCGGCGTGGCCGGATCCGCCACGCCAACCCCCCGGCGCCGCCTCCCGCGCCGCGGACCGCCGCTCCCGAGCAGCCCCGGTGTCCCCGCCGCTGGCTTCCTCGAGGAGGGGAGAGGGCCCCGCCACCGCCGTCCTTGTGGCCGGTCGGCTTTGCCGACGCGCCGCTCGGGCGGTGGCGAGGCAAAGGGGAGGAGAAGGGAGGAGGCGGCGGAGGAGGATGAGGCGCCGTCCGTGCCGCCCCTGGGACGGGAGCGACGCGGATGGGAGCGATGGAAAATGAT
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| CDS seq | ATGGCCGGACCGACAACGATGGAATTCCCCCTCTTGAGGGTGTTGTCGTGCTGTCTCATCCCTCAAGGGTGGTTGCCGGGCGAAAGCCCAGTCCTGGCTCCTTTGAGCCCCGACGGATGGCGGCGGTGGTTTACCATCGCTTCTCTTCTTGAATACGTCGTTTTGGTATCCCCTAGCCGAAGCCTCTCGATCGATTGGTGCAAGCACACTCTAGGAGTTGGCTTTGTATTGGTTGTGAGGGTGTTCTTTTGGGCGATCTCATCTATGTTTCTTTGTTGGTCTAGCGGCAGTCGGTCAAGCTTAGCGGCGGCCGGTCCGGTGTTAGCCTTCTCCCGGTCTTGTGTGTTGGAGCTGTCGGTGTGTGGGTGGTGGTATATTTTTCCTTTTTCCTGGTTACGACCCTTTAGGGTTGTGATCTTGTAA
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| Protein seq | MAGPTTMEFPLLRVLSCCLIPQGWLPGESPVLAPLSPDGWRRWFTIASLLEYVVLVSPSRSLSIDWCKHTLGVGFVLVVRVFFWAISSMFLCWSSGSRSSLAAAGPVLAFSRSCVLELSVCGWWYIFPFSWLRPFRVVIL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0429450 | OsNip_04t0429450-01 | Chr04 | 21279804 | 21281662 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCGGACCGACAACGATGGAATTCCCCCTCTTGAGGGTGTTGTCGTGCTGTCTCATCCCTCAAGGGTGGTTGCCGGGCGAAAGCCCAGTCCTGGCTCCTTTGAGCCCCGACGGATGGCGGCGGTGGTTTACCATCGCTTCTCTTCTTGAATACGTCGTTTTGGTATCCCCTAGCCGAAGCCTCTCGATCGATTGGTGCAAGCACACTCTAGGAGTTGGCTTTGTATTGGTTGTGAGGGTGTTCTTTTGGGCGATCTCATCTATGTTTCTTTGTTGGTCTAGCGGCAGTCGGTCAAGCTTAGCGGCGGCCGGTCCGGTGTTAGCCTTCTCCCGGTCTTGTGTGTTGGAGCTGTCGGTGTGTGGGTGGTGGTATATTTTTCCTTTTTCCTGGTTACGACCCTTTAGGGTTGTGATCTTGTAA
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| Protein seq | MAGPTTMEFPLLRVLSCCLIPQGWLPGESPVLAPLSPDGWRRWFTIASLLEYVVLVSPSRSLSIDWCKHTLGVGFVLVVRVFFWAISSMFLCWSSGSRSSLAAAGPVLAFSRSCVLELSVCGWWYIFPFSWLRPFRVVIL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.622632 | 4.705873 | 21.339329 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0166700 | RBH | 0.560463 | 0.170478 | 1.376043 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0429450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013520 | RBH | 2.797601 | 76.154160 | 49.867390 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031510 | RBH | 0.0 | 3.399494 | 4.819122 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0031080 | RBH | 0.391763 | 3.793259 | 4.018885 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030910 | RBH | 0.000000 | 0.186018 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031150 | RBH | 1.338664 | 18.189276 | 25.627722 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029800 | RBH | 0.000000 | 0.000000 | 0.405911 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0330600 | RBH | 0.03473 | 0.03474 | 0.004774 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030750 | RBH | 0.324517 | 0.797446 | 2.792115 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0012430 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030260 | RBH | 0.0 | 0.000000 | 3.552912 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029950 | RBH | 0.000000 | 0.000000 | 4.405804 |
