Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0166700 | OGI:12009090 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:3383995-3385735 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACGACTCGCACGAGACGGGGCGAAGTTTTATTGATAGAACAGGAAAAAATTACAAGATTACAACCCTGGAGGGTCGTAACCAGGAAAAAGGAAAAATATACCACCATCCACACACCGACAGCTCCAACACACAAGACCGGAAGAAGGCTAACACCGGACCGGCCGCCGCTAAGCGTGAGCGACCGCCGCTAGACCAACAAAGGAACACATATGAGATCGCCCAAAAGAACACCCTCACAACCAATACAAAGCCAACTCCTAGAGTGTGCTTGCACCAATCGATCGAGAGGCTTCGGCTAGGGGATACCAAAACGATGTCTTCAAGAAGAGAAGCGACGGTAAACCGCCGCCGCCATCTGTCGGGGCTCAAAGGAGTCAGGACTGGGCTTTCGCCAGGCAACCACCCTTGAGGGATGAGACAGCACGACAACGCCCTCAGGAAGGGGAATTAACCATCGTTGTCGGTCCGGCCATGGCCGGGCTGGGTTTTCACCCGCTGTTCACCACCTGCGAATCTACGACTAACGCACCAATGCTCCCACCACCCCTCAACCTCTGCTGACATGTGGGACCCCTGCACCGGCGCCCCTCGCCGGCCAGCCTTCGAGCGCCGAAGACCGCGCCACATCCACCAGCAGCTCCTCCTCGTACCGAGATCGCCTTCTCCACCGTCGGCCGCACCTCTCGCGCCAAGCCGGCCTCCTCCACCGGATGCGTCTCTCGCGCCAATCCGGCCTCCCTCCATCGGCCGTGCCTCTTGCGCCAAGCCGGCCTCCATCTCCGCCGCCTGCGCCTCTCGCGCCGAGCCAGCCTCCGCTGCCATCGGCTGCGTCTCTCTGCGCCAAGCCGGTCTCCGACCCCTCCTCCAAACGCTGCCGCGCCGGCAAGATACAGTCGTCTCCTACGCCCTCGGCTAGCCGTCCAAGGCCGCCATGCATCCTCCCACCTCAGCCACGGTGGTCACCGCCGTGCCTCCTCCCACCGCAGCCACGGTCACCACCCTGCCTCCACATTCACAGCCGCCGCAAGCCTGCCGCTGTCGCCGCTGCTGTCATCAGCCGCTGTCGCCAGCCGCCGCCACCGCCAACGTGGCTGCTGCCTCATCGCCCTCCGCCACCACCGCATCTGCAGTCCTCCGCTGCCGCCATCGCGGCCGTGGACCGCCGCTGCCGCCGTCGCCGTCGCCGCCACCGGGGCTGTGGACCTCCGCCACCGCCGTCGCCCTGGGAGGACCGGAACCAGCCTCACCCTCGAGCCTTCGCCTTCGCCACATCCGTCCACAGCGGCGCGCATCTGTCGCCTCCTTCCGGCCGCCGTCGCCGCGAGGCTCGCCGTCACTCGGCCCCTGGATGCGGGGAGACCGGATCCGCCGCCGGGGGAGGCGGATCCACCTCCGGTGTGGCCGGATTCGCCGCGACGACCCCCCGGCGCCGCCTCCCGCGCCGCTGACCTCCGCTCGCCGTTGCTCGGCCCCTGGACACGGAGAGGCCAGATCCGCCGCCGAGGAGACGGATCCGCCACGCCAACCCCCCGGTGCCGCCTCCCGCGCCGCGGACCGCCGCTCCCGAGCAGCCCCGGTGTCCCCGCTGCTGGCTTCCTCGAGGAGGGGAGAGGGCCCCACCGCCGCCGTCCTTGTGGCCGGCCGGCTTTGCCGACGCGCCGCTCAGGCGGCGGCGAGGCGAAGGGGAGGAGGCGGCGGAGGAGGATGAGGCGCCGTCCGTGCCGCCCCTCGGACGGGAGC
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| CDS seq | TTCCCCTTCCTGAGGGCGTTGTCGTGCTGTCTCATCCCTCAAGGGTGGTTGCCTGGCGAAAGCCCAGTCCTGACTCCTTTGAGCCCCGACAGATGGCGGCGGCGGTTTACCGTCGCTTCTCTTCTTGAAGACATCGTTTTGGTATCCCCTAGCCGAAGCCTCTCGATCGATTGGTGCAAGCACACTCTAGGAGTTGGCTTTGTATTGGTTGTGAGGGTGTTCTTTTGGGCGATCTCATATGTGTTCCTTTGTTGGTCTAGCGGCGGTCGCTCACGCTTAGCGGCGGCCGGTCCGGTGTTAGCCTTCTTCCGGTCTTGTGTGTTGGAGCTGTCGGTGTGTGGATGGTGGTATATTTTTCCTTTTTCCTGGTTACGACCCTCCAGGGTTGTAATCTTGTAA |
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| Protein seq | FPFLRALSCCLIPQGWLPGESPVLTPLSPDRWRRRFTVASLLEDIVLVSPSRSLSIDWCKHTLGVGFVLVVRVFFWAISYVFLCWSSGGRSRLAAAGPVLAFFRSCVLELSVCGWWYIFPFSWLRPSRVVIL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0166700 | OsNip_12t0166700-01 | Chr12 | 3383995 | 3385735 | - | RAP2018-11-26 | ||
| CDS seq | TTCCCCTTCCTGAGGGCGTTGTCGTGCTGTCTCATCCCTCAAGGGTGGTTGCCTGGCGAAAGCCCAGTCCTGACTCCTTTGAGCCCCGACAGATGGCGGCGGCGGTTTACCGTCGCTTCTCTTCTTGAAGACATCGTTTTGGTATCCCCTAGCCGAAGCCTCTCGATCGATTGGTGCAAGCACACTCTAGGAGTTGGCTTTGTATTGGTTGTGAGGGTGTTCTTTTGGGCGATCTCATATGTGTTCCTTTGTTGGTCTAGCGGCGGTCGCTCACGCTTAGCGGCGGCCGGTCCGGTGTTAGCCTTCTTCCGGTCTTGTGTGTTGGAGCTGTCGGTGTGTGGATGGTGGTATATTTTTCCTTTTTCCTGGTTACGACCCTCCAGGGTTGTAATCTTGTAA
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| Protein seq | FPFLRALSCCLIPQGWLPGESPVLTPLSPDRWRRRFTVASLLEDIVLVSPSRSLSIDWCKHTLGVGFVLVVRVFFWAISYVFLCWSSGGRSRLAAAGPVLAFFRSCVLELSVCGWWYIFPFSWLRPSRVVIL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.560463 | 0.170478 | 1.376043 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0429450 | RBH | 6.622632 | 4.705873 | 21.339329 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0166700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0330600 | SBH | 0.03473 | 0.03474 | 0.004774 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
