Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0030910 | OGI:04063510 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:33173851-33177415 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagtccatggtggttgaaactcagacataagataagaacaaacttatcttccttgacaaaaaaaagggagaaaacaccatggtttaccaaaaaaaaaagaaagataaaaggaagtagcatgccaaatgtaatgtatctaacataaattaagtcttggaaaataaaaacagtgatgactgttattgggaaatgcttggctactaaatctaataaatgtgttagttcataagtgatggcccaatcatacattattttagtcattttacttgttgcctctttccattgtgtatgttcagaattcagagaaatgtctgattaactggcacacatttctcaacttacaaaccaaccattgttctgtcaatatcaaaataatagcaaacagaaggtaggaaaatgtgagctgtcggtcaatacctgagcttaaaaacgacaaggacaataaaaagaaaatacttactgtaggtggaaaacagcaaagctactcaatgaggaaatagcagtaagtttgtgcttccacaaaaccagtcaacacaaaaaaagtgaatgcctcttccagctcaatcagatgctaccaaactcgagttccataggatgagcttgcaactgctagcaaatatacagtaaataagctgaggaaactaagttctgaaccatggtctgaatatcatgatatgttttctttagttcaacggacaaggcacccattaaaatttttgtaacactcaaaagcaccttccttgattattggagtgcacacttgagattaaaaaaagctgccgctatacaaaataactaccaaaggctaaaaccatattcaagtcccactttacaggtacacaagcaacatatgtaagagagagaagtacacaacacaagaaaggagtctatttaataaagcacaatcaaacacatgctaaaatattactacctatgttcttttttacttgtcgttttggacattgacacaatctccaatgtatatgtctcatactctcatcattactttttctagttatatatgtataaaacttattaaaaatataaccatgtgaatgtgtttttcatgacaaatctatcaatgtcattttcacatcttaacctttttttttaatttttaatgattatcatatcgagatttgaatgtgttctctaggatgtcatccttttgataacagaggtagtacctctccaatgggcacctctttcactctttgtcactaacttcagaagaagaatgtacgcagaccgtaaaatgtaaatggatttcaaaagatattgaaaaagggtacataaaccacagattgagttatttctcttagcatatcagtactgattgagaggaaagttgtgattaatgatatcgacaatttaagcatttgtgaggttaatgcatgaaacgtatgcttaccttgcatggcatctgtttgttaggaacccaaagggatgaaatgatgaacatgtcagcaaggtagttaattacatccaataacagaaggaaatgttttgatttttgacatgtagaagtgtggagcattgccatccactgaaatttctactcaagccatcaagccctgtcattttcccattagttgttagctttcaaacgagttcatctagaactctggaatacacagacgaaaagaaagaggtagatatgtaatatgttcaacaacttttccaaaaaaaaaaaaatcctccatagaatatttagctaactaaattacctcattgttgaaattgtgatatgcagttagcatcttcaaaagaaataagatggtaggatctccctgaatcctgatacaaatatccgcttcactcaggctcagtttcaactgacaaacgttacggtgaaacagaaccatcaatccataaagtctttggttgactgcagcaaccgtcattctgtgacctatcatgcaaatgaattggtcatgatagtgtaaagtaacagaaacgttgaacactggggcgaaagttccccacataggctcgtgtcgctccagccccaggggcgatgcgagcgcccccacacgcgccggccgccgccgcgccttccccctccccttcgcctcgccgccgcccgagtggcccaccggaaagccggccgggcgcaaggacggcggcggcggggcatcccggcgcccgtggcggcggaggcggccagatccggggctggggaggcgacggcggcggggcagagaaggtggcggcgacggggcggacgaggcggcggcggcgacggggcggacgaggcggcgctggcggcggccgacggggcggaggaggcgctggcgacggtggcgacaggacgggggtggagctggcagcagggacagggcgggtccggcggcgcgcgacgtcaccgaatctggcaacctcctcgctggatccggcgccccccagtccggatctgtcctctccggcgtgggaggccggatcccctccgtcgaggcggcgaccggccagcataccgacgacagtgtgcagccgggtgtggaggcggggaagaaagagaccggcggctgtgtgggcgcagcgttggcagcgggacccgcgtgagagacgcggcttgaggccggcacggcgcgaagacagcggcattggtccctgtgcggcgacggcgcggtgctcggcggcgatgacggcggtgcctccccagatccgcgcctctcgaccggatctagagggtggtcggctgtggtggtcggcgacggcggtcgacttgcgacagctggtgacggcagttggcaacggcggcgacgggtggttgcggcagttggcggcggcgacgtcggccgacgacgccggcggaggacttggcggcggcgtggcggagggcaacagtgaagtggccgctagcagtggcggtggctcgcggagacggtggctggtggtcgcgacagcggtcaccagaggcatggcggccttggacggctagccgagggcgtggcagacggctgcatttggccggcgcagcatcgtctggtggaaaggtcggagaccggcttggcgcaaagaggcgcagccgatggcagtggaggccggctagtgcgagaggcgcgggcggcggagttagaggccggcttggcgcgagaggcgcggccggcggtgaaggaggcgacttaggtgtgaggaggagctgctggtgggtgtagcgcggtcttcggcgcacgaaggctggccggcgagggacgccggtgcaggggtcccacatgtcggtagagcttgtgtggtggtggagcatcggtgtgtcagctgtggatcttacccctcaagggtgattgccggacgaaagctcagtcttggctcctttgagtttcgacggacggcggtggcagtttttctgtcgcttctcttcttgaagacgtcgttttggcatcccctagggggcaatctcggttgtccctttgttggtctagtggcagccggtcacgcttagcggcggccggtccgatgctagccttctcctgggcttgtgtgttggcgatgtcggtgtgtgggtggtggtattttttcctttttcctgtttacgaccctctagggttgtaatcttgtaatt
More
|
||||||||||
| CDS seq | atggagtccatgtgtaaagtaacagaaacgttgaacactggggcgaaagttccccacataggctcgtgtcgctccagccccaggggcgatgcgagcgcccccacacgcgccggccgccgccgcgccttccccctccccttcgcctcgccgccgcccgagtggcccaccggaaagccggccgggcgcaaggacggcggcggcggggcatcccggcgcccgtggcggcggaggcggccagatccggggctggggaggcgacggcggcggggcagagaaggtggcggcgacggggcggacgaggcggcggcggcgacggggcggacgaggcggcgctggcggcggccgacggggcggaggaggcgctggcgacggtggcgacaggacgggggtggagctggcagcagggacagggcgggtccggcggcgcgcgacgtcaccgaatctggcaacctcctcgctggatccggcgccccccagtccggatctgtcctctccggcgtgggaggccggatcccctccgtcgaggcggcgaccggccagcataccgacgacagtgtgcagccgggtgtggaggcggggaagaaagagaccggcggctgtcgttggcagcgggacccgcgtgagagacgcggcttgaggccggcacggcgcgaagacagcggcattggtccctgtgcggcgacggcgcggtgctcggcggcgatgacggcggtgcctccccagatccgcgcctctcgaccggatctagagggtggtcggctgtggtggtcggcgacggcggtcgacttgcgacagctggtgacggcagttggcaacggcggcgacgggtggttgcggcagttggcggcggcgactttttctgtcgcttctcttcttgaagacgtcgttttggcatcccctagggggcaatctcggttgtccctttgttggtctagtggcagccggtcacgcttagcggcggccggtccgatgctagccttctcctgggcttgtgtgttggcgatgtcggtgtgtgggtggtggtattttttcctttttcctgtttacgaccctctagggttgtaa
More
|
||||||||||
| Protein seq | MESMCKVTETLNTGAKVPHIGSCRSSPRGDASAPTRAGRRRAFPLPFASPPPEWPTGKPAGRKDGGGGASRRPWRRRRPDPGLGRRRRRGREGGGDGADEAAAATGRTRRRWRRPTGRRRRWRRWRQDGGGAGSRDRAGPAARDVTESGNLLAGSGAPQSGSVLSGVGGRIPSVEAATGQHTDDSVQPGVEAGKKETGGCRWQRDPRERRGLRPARREDSGIGPCAATARCSAAMTAVPPQIRASRPDLEGGRLWWSATAVDLRQLVTAVGNGGDGWLRQLAAATFSVASLLEDVVLASPRGQSRLSLCWSSGSRSRLAAAGPMLAFSWACVLAMSVCGWWYFFLFPVYDPLGL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0030910 | OsARC_04g0030910.01 | Chr04 | 33173851 | 33177415 | + | NAM | ||
| CDS seq | atggagtccatgtgtaaagtaacagaaacgttgaacactggggcgaaagttccccacataggctcgtgtcgctccagccccaggggcgatgcgagcgcccccacacgcgccggccgccgccgcgccttccccctccccttcgcctcgccgccgcccgagtggcccaccggaaagccggccgggcgcaaggacggcggcggcggggcatcccggcgcccgtggcggcggaggcggccagatccggggctggggaggcgacggcggcggggcagagaaggtggcggcgacggggcggacgaggcggcggcggcgacggggcggacgaggcggcgctggcggcggccgacggggcggaggaggcgctggcgacggtggcgacaggacgggggtggagctggcagcagggacagggcgggtccggcggcgcgcgacgtcaccgaatctggcaacctcctcgctggatccggcgccccccagtccggatctgtcctctccggcgtgggaggccggatcccctccgtcgaggcggcgaccggccagcataccgacgacagtgtgcagccgggtgtggaggcggggaagaaagagaccggcggctgtcgttggcagcgggacccgcgtgagagacgcggcttgaggccggcacggcgcgaagacagcggcattggtccctgtgcggcgacggcgcggtgctcggcggcgatgacggcggtgcctccccagatccgcgcctctcgaccggatctagagggtggtcggctgtggtggtcggcgacggcggtcgacttgcgacagctggtgacggcagttggcaacggcggcgacgggtggttgcggcagttggcggcggcgactttttctgtcgcttctcttcttgaagacgtcgttttggcatcccctagggggcaatctcggttgtccctttgttggtctagtggcagccggtcacgcttagcggcggccggtccgatgctagccttctcctgggcttgtgtgttggcgatgtcggtgtgtgggtggtggtattttttcctttttcctgtttacgaccctctagggttgtaa
More
|
|||||||
| Protein seq | MESMCKVTETLNTGAKVPHIGSCRSSPRGDASAPTRAGRRRAFPLPFASPPPEWPTGKPAGRKDGGGGASRRPWRRRRPDPGLGRRRRRGREGGGDGADEAAAATGRTRRRWRRPTGRRRRWRRWRQDGGGAGSRDRAGPAARDVTESGNLLAGSGAPQSGSVLSGVGGRIPSVEAATGQHTDDSVQPGVEAGKKETGGCRWQRDPRERRGLRPARREDSGIGPCAATARCSAAMTAVPPQIRASRPDLEGGRLWWSATAVDLRQLVTAVGNGGDGWLRQLAAATFSVASLLEDVVLASPRGQSRLSLCWSSGSRSRLAAAGPMLAFSWACVLAMSVCGWWYFFLFPVYDPLGL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.186018 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0429450 | RBH | 6.622632 | 4.705873 | 21.339329 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g33580 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0429450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0030730 | RBH | 0.348645 | 18.958942 | 9.783644 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031510 | RBH | 0.0 | 3.399494 | 4.819122 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0031080 | RBH | 0.391763 | 3.793259 | 4.018885 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030841 | RBH | 0.0 | 0.223648 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031150 | RBH | 1.338664 | 18.189276 | 25.627722 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0321100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029800 | RBH | 0.000000 | 0.000000 | 0.405911 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0317600 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0012490 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0030080 | RBH | 0.0 | 3.495911 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0030200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030750 | RBH | 0.324517 | 0.797446 | 2.792115 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0030761 | RBH | 0.0 | 11.162854 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030260 | RBH | 0.0 | 0.000000 | 3.552912 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029950 | RBH | 0.000000 | 0.000000 | 4.405804 |
